FFCP PHASE1:Hg19::chr4:157892921..157892990,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56034 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8801 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NRA1 | |||
|association_with_transcript=-375bp_to_ENST00000502773,ENST00000543489,NM_016205,NR_036641,uc003iph.1,uc003ipi.1,uc011cis.1_5end | |||
|cluster_id=chr4:157892921..157892990,- | |||
|description=CAGE_peak_1_at_PDGFC_5end | |||
|id=chr4:157892921..157892990,- | |||
|ontology_enrichment_celltype=CL:0000055!1.72e-17!180;CL:0000057!2.14e-11!75;CL:0002371!1.18e-08!591;CL:0000680!6.00e-08!57;CL:0000056!6.00e-08!57;CL:0000355!6.00e-08!57;CL:0000144!8.87e-08!625;CL:0000187!5.66e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.34e-08;55!CL:0000048;5.02e-08;58!CL:0000723;5.91e-08;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.68e-12,76;CL:0000680,2.56e-08,58;CL:0000056,2.56e-08,58;CL:0000355,2.56e-08,58;CL:0000187,2.51e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!4.86e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.56e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.63e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0005256!4.66e-15!143;UBERON:0000468!9.78e-13!659;UBERON:0000467!1.84e-12!625;UBERON:0000480!3.85e-12!626;UBERON:0000926!6.97e-11!448;UBERON:0004120!6.97e-11!448;UBERON:0006603!6.97e-11!448;UBERON:0002100!1.11e-10!216;UBERON:0000475!1.50e-10!365;UBERON:0000062!5.50e-10!511;UBERON:0000914!1.06e-09!83;UBERON:0002329!1.06e-09!83;UBERON:0003077!1.06e-09!83;UBERON:0003059!1.06e-09!83;UBERON:0007282!1.06e-09!83;UBERON:0009618!1.06e-09!83;UBERON:0007285!1.06e-09!83;UBERON:0004290!1.14e-08!70;UBERON:0002050!1.21e-08!605;UBERON:0005423!1.21e-08!605;UBERON:0000479!1.69e-08!787;UBERON:0000923!2.09e-08!604;UBERON:0005291!2.09e-08!604;UBERON:0006598!2.09e-08!604;UBERON:0002532!2.09e-08!604;UBERON:0002204!2.61e-08!167;UBERON:0003104!3.27e-08!238;UBERON:0009142!3.27e-08!238;UBERON:0002385!4.23e-08!63;UBERON:0001015!4.23e-08!63;UBERON:0000383!4.23e-08!63;UBERON:0000922!5.86e-08!612;UBERON:0001134!6.06e-08!61;UBERON:0002036!6.06e-08!61;UBERON:0003082!6.06e-08!61;UBERON:0000486!1.20e-07!82;UBERON:0000481!1.29e-07!347;UBERON:0003102!1.53e-07!95;UBERON:0001444!8.39e-07!48;UBERON:0007625!8.91e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;8.16e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,5.73e-14,160;UBERON:0009142,5.73e-14,160;UBERON:0005256,1.59e-11,122;UBERON:0002204,8.24e-10,167;UBERON:0002100,8.59e-10,199;UBERON:0000479,1.90e-09,773;UBERON:0002329,4.91e-09,71;UBERON:0003059,4.91e-09,71;UBERON:0007282,4.91e-09,71;UBERON:0004290,4.91e-09,71;UBERON:0009618,4.91e-09,71;UBERON:0003077,7.95e-09,72;UBERON:0007285,7.95e-09,72;UBERON:0007503,9.86e-09,78;UBERON:0007524,9.87e-09,73;UBERON:0002385,1.84e-08,64;UBERON:0001015,1.84e-08,64;UBERON:0000383,1.84e-08,64;UBERON:0001134,2.63e-08,62;UBERON:0002036,2.63e-08,62;UBERON:0003082,2.63e-08,62;UBERON:0000486,5.37e-08,83;UBERON:0000926,6.19e-08,315;UBERON:0004120,6.19e-08,315;UBERON:0006603,6.19e-08,315;UBERON:0005423,2.49e-07,581;UBERON:0003102,5.56e-07,99;UBERON:0007625,8.61e-07,11 | |||
|phase1_expression=17.622802789244,23.7651581518991,13.1087595809253,10.007329835313,10.2801051718276,11.3404008133048,15.1979926900986,5.68547886084148,10.7086107561934,15.7269719360966,12.5604210235037,18.1306338868043,22.1564261711901,17.8223548262467,20.5466372951308,18.1527789541979,19.8889194247912,24.1002329827833,22.9328415431538,24.0086063249736,29.7841009216609,31.3454721478088,22.8988789704845,15.7405588833817,16.3205431473244,0,0,0,6.68719270643137,4.22212337906934,6.50227717927519,3.67768489791571,9.33738348212575,13.6808983761711,0,0,10.8632162553893,11.6339035791694,13.0353890855592,5.20826089718044,89.5661896959697,57.3291788853594,67.4847987201569,8.72389432677388,9.44689859222024,6.54976965207104,6.97287110717054,9.04569353648017,8.981484755958,17.261543539329,14.3449995656296,16.7902383220896,6.89491361473237,4.51839278508678,4.06279459783025,5.27078550719293,3.82068610080984,5.16864014223695,8.87643287875617,7.06043859567406,6.39337125799041,24.7388475140037,19.9463657621632,25.9997097824943,19.4440189881151,16.4541715160431,11.8336227309159,15.5774172459181,14.0800387973454,12.1625753034865,7.87019353423379,16.2042159834528,14.2408074348398,13.3090830376523,16.5831353972734,6.28975936525128,7.63834691796167,9.31096735617339,7.39337698806569,13.3955989558387,19.2949176883117,5.66258876670365,0,0,0,0,0,0,0,0,0,0,0,15.8605594294831,11.2101712596307,8.69167479757754,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.301150238155546,0.255973222308837,0,0.236777252044017,0.821127996921047,0,0,0,43.8852359365131,8.71911117614727,23.398848817366,36.5053543908412,22.0588680679791,25.6378338560658,25.4491503056352,62.2892633987374,68.1596031752929,53.6585141859405,71.4096807685115,18.0751124186843,12.0217445136539,13.3482399402395,22.7183175558278,25.0746821710945,16.6197450648581,7.3932093534656,9.15191857248205,8.91498003190956,2.38514888840046,3.4409383804245,5.9013885273291,3.95715559346807,4.61449379830897,5.22724279686128,2.71693456497854,3.87625138753993,3.91342888955381,8.70273593188143,9.26507429351038,3.80136052859256,21.7215231217871,1.47065232138347,12.1521292182264,1.96459402224975,0.673588117878509,1.46394924628319,0,3.79706263827252,1.28241220751285,1.31780417436063,3.87780264148325,13.082821564276,17.8909902610315,15.3222919114142,27.4087004283363,30.6915184201231,18.0880874921162,15.1382952038423,9.60740961567345,46.1268315540089,13.0708634867902,11.5851177979932,7.5192475432191,11.3518070733699,19.58998143232,16.6368216601996,31.8403278366927,7.41613368007784,30.786428193671,14.4444433331831,9.38863077335163,7.30344194851692,22.865267180548,13.0204376350474,23.8682554516018,10.6920257155385,27.1993622206413,17.2930658768225,16.5282172617735,24.0720642954315,25.6492965737527,36.5724632439121,53.5552697474622,41.6823402286667,31.7002304292919,10.549193033882,45.2061881935932,22.6370832147681,12.2920502672546,68.7208610033281,42.3545895169984,55.9079971899015,46.1569803702343,60.9282559390971,22.7028222025593,47.2051157836494,31.7572150315933,7.59736467048416,79.5221487237216,30.1248773700644,12.2083626463551,9.08326009867495,7.36414525595254,10.3249654340041,2.5614478287215,1.06023814657188,1.62671520017326,5.80501908086074,1.51392510525377,1.09493207722749,32.8544017892614,27.6593603422941,20.7202382028721,17.6459812652152,12.9938306700525,0,0.337169380156203,0,0,0,0.237270619111097,0,0.392442930250692,0.38474715694639,0,4.20725321410337,32.925920906512,35.2820907325301,20.2808055714929,12.7767538168091,20.6776467338491,0,3.56666471775029,35.8576723523918,13.3895348198523,11.240175325762,11.6613607997492,15.2770934511574,15.3129903495853,8.31947828223663,44.7427160278347,22.4904985651649,79.1334599149438,6.20775725372617,8.33373922637899,11.6055032863105,0.790204397959275,0,31.2695597730995,5.85010662848094,11.4445994962321,5.62403003920662,7.39121364074982,6.238104278665,15.5831829502956,6.68458058582112,11.5014803749563,0,0.088048434013226,17.0009054743433,25.5092317548022,15.275334444592,0.190493682876507,0,1.17217447210047,5.13217338068116,2.87916979569306,0,0,16.483269398768,17.8743628221645,17.0878205962814,52.4843165976578,21.4593867511129,28.740293586904,60.3679524647656,45.7632722410011,24.4347005549035,18.4403871630262,30.9049727658675,41.6065961545209,11.9376753186117,14.8183260620538,22.8015329005615,37.6715465667099,19.7987968233357,19.8949988859327,22.6598699236076,23.7935719013296,24.3247561282381,14.5654556515317,12.6500363689819,4.0736225433569,8.04033550838797,99.8458335285029,31.8518874668674,32.8762116080613,45.1233627364537,0,0.591092280605782,0,0.256686072559497,24.9012731738014,16.9181810014908,3.09315525111078,5.19300422536481,3.18969375826582,1.49801404789436,0,0,18.6491067413093,26.5090376161629,23.0575270144775,3.11956292296211,6.0665856191035,9.61984731707001,32.4481719529816,28.5898794741333,36.3852006489576,22.7640756843511,61.7729806637956,58.8137647648033,25.6306662680844,4.30762546418029,10.2943027143257,3.721824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| |||
|short_description=p1@PDGFC | |||
}} |
Latest revision as of 09:19, 16 September 2015
Short description: | p1@PDGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDGFC_5end |
Coexpression cluster: | NA |
Association with transcript: | -375bp_to_ENST00000502773, ENST00000543489, NM_016205, NR_036641, uc003iph.1, uc003ipi.1, uc011cis.1_5end |
EntrezGene: | PDGFC |
HGNC: | 8801 |
UniProt: | Q9NRA1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.68e-12 | 76 |
muscle precursor cell | 2.56e-08 | 58 |
myoblast | 2.56e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.56e-08 | 58 |
muscle cell | 2.51e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 5.73e-14 | 160 |
entire embryonic mesenchyme | 5.73e-14 | 160 |
trunk mesenchyme | 1.59e-11 | 122 |
musculoskeletal system | 8.24e-10 | 167 |
trunk | 8.59e-10 | 199 |
tissue | 1.90e-09 | 773 |
somite | 4.91e-09 | 71 |
presomitic mesoderm | 4.91e-09 | 71 |
presumptive segmental plate | 4.91e-09 | 71 |
dermomyotome | 4.91e-09 | 71 |
trunk paraxial mesoderm | 4.91e-09 | 71 |
paraxial mesoderm | 7.95e-09 | 72 |
presumptive paraxial mesoderm | 7.95e-09 | 72 |
epithelial vesicle | 9.86e-09 | 78 |
dense mesenchyme tissue | 9.87e-09 | 73 |
muscle tissue | 1.84e-08 | 64 |
musculature | 1.84e-08 | 64 |
musculature of body | 1.84e-08 | 64 |
skeletal muscle tissue | 2.63e-08 | 62 |
striated muscle tissue | 2.63e-08 | 62 |
myotome | 2.63e-08 | 62 |
multilaminar epithelium | 5.37e-08 | 83 |
mesoderm | 6.19e-08 | 315 |
mesoderm-derived structure | 6.19e-08 | 315 |
presumptive mesoderm | 6.19e-08 | 315 |
developing anatomical structure | 2.49e-07 | 581 |
surface structure | 5.56e-07 | 99 |
pigment epithelium of eye | 8.61e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.63e-09 | 14 |