FFCP PHASE1:Hg19::chr4:8201091..8201103,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54436 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26009 | |||
|TSSclassifier=strong | |||
|UniProt=Q8TE82,Q6NVH2,E7EQR1,D6REB6,F5GXD3 | |||
|association_with_transcript=0bp_to_ENST00000245105,ENST00000382521,ENST00000457650,ENST00000515682,ENST00000539824_5end | |||
|cluster_id=chr4:8201091..8201103,+ | |||
|description=CAGE_peak_2_at_SH3TC1_5end | |||
|id=chr4:8201091..8201103,+ | |||
|ontology_enrichment_celltype=CL:0000115!1.94e-19!35;CL:0002139!3.46e-18!24;CL:0002078!2.03e-15!44;CL:0000071!1.32e-14!18;CL:0002546!1.32e-14!18;CL:0000213!6.99e-14!57;CL:0000215!6.99e-14!57;CL:0002087!1.08e-13!119;CL:0000738!2.39e-13!140;CL:0002057!2.91e-12!42;CL:0002031!8.27e-12!124;CL:0002194!1.13e-11!63;CL:0000576!1.13e-11!63;CL:0000040!1.13e-11!63;CL:0000559!1.13e-11!63;CL:0002009!2.62e-11!65;CL:0000557!6.78e-11!71;CL:0000839!8.41e-11!70;CL:0000766!1.17e-10!76;CL:0000860!1.67e-10!45;CL:0000988!8.98e-10!182;CL:0000037!5.81e-09!172;CL:0000566!5.81e-09!172;CL:1000413!3.34e-08!9;CL:0002393!2.01e-07!9;CL:0002397!2.01e-07!9;CL:0002032!4.35e-07!165;CL:0000837!4.35e-07!165;CL:0000076!7.14e-07!62;CL:0000945!7.96e-07!24;CL:0000826!7.96e-07!24;CL:0000236!9.06e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.65e-37;24!CL:0000071;1.17e-33;18!CL:0000115;5.91e-29;36!CL:1000413;6.79e-20;9!CL:0002078;4.32e-17;45!CL:0000236;2.56e-15;13!CL:0002544;4.83e-14;6!CL:0000213;1.03e-13;58!CL:0000215;1.03e-13;58!CL:0002543;4.36e-13;6!CL:0002393;6.09e-13;6!CL:0002397;6.09e-13;6!CL:0000945;5.98e-09;24!CL:0000784;1.55e-07;3!CL:0002618;4.59e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.93e-38,24;CL:0000115,7.92e-35,36;CL:0000071,3.11e-34,18;CL:0002546,3.11e-34,18;CL:0002078,2.78e-26,45;CL:0000213,6.58e-24,58;CL:0000215,6.58e-24,58;CL:1000413,6.29e-20,9;CL:0002393,1.64e-14,9;CL:0002397,1.64e-14,9;CL:0000236,4.22e-14,14;CL:0002544,5.89e-14,6;CL:0002543,1.17e-13,6;CL:0000738,1.76e-10,136;CL:0002087,3.08e-10,115;CL:0000076,2.51e-09,63;CL:0000945,6.04e-09,24;CL:0000826,6.04e-09,24;CL:0002031,1.01e-08,120;CL:0000222,3.66e-08,121;CL:0000037,1.96e-07,168;CL:0000784,2.28e-07,3;CL:0002618,2.43e-07,3;CL:0000988,3.60e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002546;1.17e-33;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.32e-14!18;UBERON:0004638!1.32e-14!18;UBERON:0004852!1.32e-14!18;UBERON:0002193!4.02e-12!112;UBERON:0002405!2.38e-11!115;UBERON:0000487!3.71e-11!22;UBERON:0002390!1.10e-09!102;UBERON:0003061!1.10e-09!102;UBERON:0006914!9.85e-09!25;UBERON:0002371!3.28e-08!80;UBERON:0003915!3.34e-08!9;UBERON:0004700!3.34e-08!9;UBERON:0001917!3.34e-08!9;UBERON:0003081!3.75e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.17e-33;18!UBERON:0001986;1.17e-33;18!UBERON:0004852;1.17e-33;18!UBERON:0000487;1.32e-26;22!UBERON:0006914;8.36e-23;25!UBERON:0003915;6.79e-20;9!UBERON:0004700;6.79e-20;9!UBERON:0001917;6.79e-20;9!UBERON:0000490;5.24e-17;33!UBERON:0001638;3.25e-11;9!UBERON:0003920;3.25e-11;9!UBERON:0004582;3.25e-11;9!UBERON:0000055;4.98e-08;65!UBERON:0007500;2.60e-07;56!UBERON:0001981;2.60e-07;56!UBERON:0004537;2.60e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,3.11e-34,18;UBERON:0001986,3.11e-34,18;UBERON:0004852,3.11e-34,18;UBERON:0000487,4.58e-27,22;UBERON:0006914,3.33e-23,25;UBERON:0003915,6.29e-20,9;UBERON:0004700,6.29e-20,9;UBERON:0001917,6.29e-20,9;UBERON:0000055,3.19e-13,68;UBERON:0001638,9.90e-12,9;UBERON:0003920,9.90e-12,9;UBERON:0004582,9.90e-12,9;UBERON:0002049,1.11e-10,78;UBERON:0007798,1.11e-10,78;UBERON:0007500,1.65e-10,59;UBERON:0001981,1.65e-10,59;UBERON:0004537,1.65e-10,59;UBERON:0006965,1.65e-10,59;UBERON:0003081,1.39e-08,203;UBERON:0004535,3.17e-07,109;UBERON:0001009,7.27e-07,112;UBERON:0004872,8.86e-07,83 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0.263766978228454,0.247532705920093,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0.236132343941038,0.393364276848904,0.767658796194425,1.39334510984468,0.919421224478927,1.50602959389125,0.369754010166788,2.01414721508784,0.568676929949686,0.293600439334847,3.32397245119126,1.80490002723128,1.08505435357926,0.447830948479849,0.32389366601898,0.257575567634187,0.581592955118259,1.51150377475524,0.727752183563449,0.697287110717054,0.822335776043652,0.619412741790207,0,0.256160706529101,0.236482229888585,0.689491361473237,1.29096936716765,0,0.752969358170419,1.63743690034707,1.57306439111559,0.612167784741805,0.320929027076094,0.639337125799041,0.329851300186716,0.598390972864896,0.852449501065388,0.290209238628584,0.56738522469114,0,0,0,0.868755378820466,0.605399502633369,0.736555271975129,0,2.32380814943136,2.12604299965044,1.04829322754188,0.673971786878971,0.450530678524519,0.32145117339416,0.855038231223746,1.9891667719909,1.82664153764634,0,1.63841583378639,1.77901850772711,0.853460445133014,1.20118796110804,1.14950487990897,4.62731410949403,2.86216126360609,2.84606484554724,1.17447437874188,2.6759125968766,0,0.560508562981536,2.10707267820062,0,0,0.616804496998528,0,0,0,0,0,1.17842362989935,0.664601683750863,0,0,0.130059347559878,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.802320587350522,0,0,0,0.12786256184353,0,0,0,0,1.45990461090791,0,0,0.087834785693126,0.654895377488563,0.364295288292542,0.370784442784429,0.324547393654683,0.522389211897802,0.398873881556595,2.38490624305342,1.14398982156026,3.34311751196608,2.98143611050058,2.58070378531837,5.55424802572151,3.95715559346807,1.67799774483962,3.30141650328081,2.29894463190492,3.6178346283706,0.71153252537342,5.69025041699939,8.86224497640123,0.760272105718513,8.7862340717341,1.10298924103761,4.0507097394088,1.51809538082936,2.46982309888787,1.80178368773316,10.7321646226118,2.84779697870439,1.83201743930407,0,0,0.436094052142534,0,0,0,0,0,0,0,0.24666754841716,0,0.808264032418128,0.326923806226917,0.302714855289863,0.576175924479999,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0.567160915800105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.545492241181669,0.573609190778008,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0.241011029883482,0.441175890929576,0,0.237270619111097,0,0.392442930250692,0,6.64339909162183,0,0,0,0,0.982827216677626,1.18157981336281,1.7658523976586,0.368965315629341,0,0.219500570817251,0,0.301586917234893,0.0925884451585296,0,0,0,0,0,1.87676382089396,0.462985512576611,1.71228737011138,0,0,0.984868024349589,0,0.297262324577456,0,0.503946384596579,0.283550194484773,0.447792613514241,0.290633938513962,1.15014803749563,0,0,0.621984346622316,0.576479813667846,0.37872730027914,0.063497894292169,0.381988425558278,0,0,0,0.300343057843917,0,0.224262168690721,0,0.07333828582095,0.387815147273333,0,0,0,0,0,0,0,0.285955987316295,0,0,0.977208552881205,0,0,0,0,0,1.2162378064119,1.00451418286425,4.21667878966063,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,1.24060815673732,0.862856803274467,0.640365346820666,0,0,0.30239029332968,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0.601519410909855,0.368323955743585,0,0,0,0.902399225814824,0.231046011313244,0,0,0,4.54933536283586,1.87103075804167,0.647747748306418,4.62681758070868,0.270946437543853,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0,0,0.656029291399411,0,0.309123034943167,0,0,0,0,0,0.096670718292122,0.308097234229289,0,0,0,0,0,0,0.991709492165869,0.384380134730212,2.29702882490251,0.50578890427775,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0.255897791311334,0,0,0,0,0,0.235624804691373,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0.379473173765715,0,0.384888450902048,1.34060455107157,5.44454924306613,0.659006605437454,0.43050537267123,1.68471475667626,1.33029046061003,0.459446800413919,0.507447609232169,0,0,0.952927101831156,0.411362273086194,0,0,0,0,0,0,0.185803175125719,0,2.13425530045242,0,0.399158742865633,0.383010740264733,1.05836791361941,0,0,0.684704037099577,0,0,0.677167111206413,0,0,0.425846237690326,0,0.307240764308458,0,0,0.19538809540204,0,0,0,0,0,0,1.46508179271894,0,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0.211125408127993,0,0.552567831062295,0.503865495708552,0.102268682502155,0.861593638227486,0,0.0898683511473268,0,0,0.591860433821602,0,0,0,0.371072392647405,0,0,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0.885741385813839,0.60298219312704,0,0.110579259931225,0.295547618953547,0,0.10893846351899,0,0.0769502585037971,0,0.46112780877612,0.179515288819544,0.325942115766024,0,0,1.06606955203727,1.02193298195737,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0.611030144933625,0.296521128680622,0.617819694732514,1.04421949505455,1.21322039365219,3.21031058919516,0,5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| |||
|short_description=p2@SH3TC1 | |||
}} |
Latest revision as of 22:45, 18 September 2015
Short description: | p2@SH3TC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SH3TC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000245105, ENST00000382521, ENST00000457650, ENST00000515682, ENST00000539824_5end |
EntrezGene: | SH3TC1 |
HGNC: | 26009 |
UniProt: | Q8TE82Q6NVH2E7EQR1D6REB6F5GXD3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.93e-38 | 24 |
endothelial cell | 7.92e-35 | 36 |
blood vessel endothelial cell | 3.11e-34 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.11e-34 | 18 |
meso-epithelial cell | 2.78e-26 | 45 |
lining cell | 6.58e-24 | 58 |
barrier cell | 6.58e-24 | 58 |
endothelial cell of artery | 6.29e-20 | 9 |
intermediate monocyte | 1.64e-14 | 9 |
CD14-positive, CD16-positive monocyte | 1.64e-14 | 9 |
B cell | 4.22e-14 | 14 |
aortic endothelial cell | 5.89e-14 | 6 |
vein endothelial cell | 1.17e-13 | 6 |
leukocyte | 1.76e-10 | 136 |
nongranular leukocyte | 3.08e-10 | 115 |
squamous epithelial cell | 2.51e-09 | 63 |
lymphocyte of B lineage | 6.04e-09 | 24 |
pro-B cell | 6.04e-09 | 24 |
hematopoietic lineage restricted progenitor cell | 1.01e-08 | 120 |
mesodermal cell | 3.66e-08 | 121 |
hematopoietic stem cell | 1.96e-07 | 168 |
plasmacytoid dendritic cell | 2.28e-07 | 3 |
endothelial cell of umbilical vein | 2.43e-07 | 3 |
hematopoietic cell | 3.60e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 3.11e-34 | 18 |
endothelium | 3.11e-34 | 18 |
cardiovascular system endothelium | 3.11e-34 | 18 |
simple squamous epithelium | 4.58e-27 | 22 |
squamous epithelium | 3.33e-23 | 25 |
endothelial tube | 6.29e-20 | 9 |
arterial system endothelium | 6.29e-20 | 9 |
endothelium of artery | 6.29e-20 | 9 |
vessel | 3.19e-13 | 68 |
vein | 9.90e-12 | 9 |
venous blood vessel | 9.90e-12 | 9 |
venous system | 9.90e-12 | 9 |
vasculature | 1.11e-10 | 78 |
vascular system | 1.11e-10 | 78 |
epithelial tube open at both ends | 1.65e-10 | 59 |
blood vessel | 1.65e-10 | 59 |
blood vasculature | 1.65e-10 | 59 |
vascular cord | 1.65e-10 | 59 |
lateral plate mesoderm | 1.39e-08 | 203 |
cardiovascular system | 3.17e-07 | 109 |
circulatory system | 7.27e-07 | 112 |
splanchnic layer of lateral plate mesoderm | 8.86e-07 | 83 |