FFCP PHASE1:Hg19::chr5:125759280..125759291,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65983 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24911 | |||
|TSSclassifier=strong | |||
|UniProt=D6RFH3,D6R9P9 | |||
|association_with_transcript=116bp_to_ENST00000505720,ENST00000513978,ENST00000514099_5end | |||
|cluster_id=chr5:125759280..125759291,+ | |||
|coexpression_cluster_id=C1274 | |||
|description=CAGE_peak_12_at_GRAMD3_5end | |||
|id=chr5:125759280..125759291,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.52e-17;12!CL:0002580;3.86e-14;3!CL:0002579;7.96e-14;3!CL:0002615;5.87e-13;3!CL:0000136;6.12e-11;13!CL:0002617;1.09e-09;2!CL:0000197;7.65e-07;6!CL:0000098;7.65e-07;6!CL:0002167;7.65e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,5.24e-17,12;CL:0002580,3.97e-14,3;CL:0002579,6.91e-14,3;CL:0002615,9.82e-13,3;CL:0002617,1.24e-09,2;CL:0000136,2.34e-09,15;CL:0000197,6.09e-07,6;CL:0000098,6.09e-07,6;CL:0002167,6.09e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.11e-16!115;UBERON:0001049!1.75e-14!57;UBERON:0005068!1.75e-14!57;UBERON:0006241!1.75e-14!57;UBERON:0007135!1.75e-14!57;UBERON:0002616!3.43e-13!59;UBERON:0003075!2.05e-11!86;UBERON:0007284!2.05e-11!86;UBERON:0000033!4.91e-11!123;UBERON:0004121!7.08e-11!169;UBERON:0000153!1.18e-10!129;UBERON:0007811!1.18e-10!129;UBERON:0000955!4.14e-10!69;UBERON:0006238!4.14e-10!69;UBERON:0002346!4.38e-10!90;UBERON:0003080!5.16e-10!42;UBERON:0000924!5.29e-10!173;UBERON:0006601!5.29e-10!173;UBERON:0001017!1.23e-09!82;UBERON:0002780!1.55e-09!41;UBERON:0001890!1.55e-09!41;UBERON:0006240!1.55e-09!41;UBERON:0005743!6.27e-09!86;UBERON:0000475!7.15e-09!365;UBERON:0000073!1.40e-07!94;UBERON:0001016!1.40e-07!94;UBERON:0000064!1.51e-07!219;UBERON:0001893!1.86e-07!34;UBERON:0002020!1.94e-07!34;UBERON:0003528!1.94e-07!34;UBERON:0003056!3.52e-07!61;UBERON:0002791!5.08e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;5.13e-25;6!UBERON:0002358;5.13e-25;6!UBERON:0003684;5.13e-25;6!UBERON:0001178;5.13e-25;6!UBERON:0004457;1.83e-16;9!UBERON:0000042;1.83e-16;9!UBERON:0000310;7.16e-11;10!UBERON:0001443;7.54e-10;11!UBERON:0005162;2.42e-09;2!UBERON:0000122;2.42e-09;2!UBERON:0005406;7.92e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,7.54e-25,6;UBERON:0002358,7.54e-25,6;UBERON:0003684,7.54e-25,6;UBERON:0001178,7.54e-25,6;UBERON:0004457,4.23e-12,12;UBERON:0000042,4.23e-12,12;UBERON:0000310,7.73e-11,10;UBERON:0001443,8.07e-10,11;UBERON:0005162,1.97e-09,2;UBERON:0000122,1.97e-09,2;UBERON:0005406,3.99e-09,2;UBERON:0001049,1.78e-07,56;UBERON:0005068,1.78e-07,56;UBERON:0006241,1.78e-07,56;UBERON:0007135,1.78e-07,56;UBERON:0003075,2.18e-07,82;UBERON:0007284,2.18e-07,82;UBERON:0002346,6.58e-07,86 | |||
|phase1_expression=4.1786027232228,2.35510576280081,6.62485699251064,1.0007329835313,1.34088328328186,1.74467704820074,0,0,0,0.245733936501509,0,1.09220686065086,0.527533956456907,0.123766352960047,0,0,0,0.730310090387373,0,0,0,0,0,0,0.125542639594803,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.616804496998528,0.83593247695339,0,0.473447805734733,0,0.668462741311041,0.294605907474837,0,0.812411591295047,0.128091319725675,0.650296737799391,0,0,0,0.444859689486181,0,0,0.113309342697566,0,0,0,0,0,0,0,0,1.24930726552346,0.473554504088034,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.756278537312543,0,0.175669571386252,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,2.48485975847659,1.2663051166458,1.32409180813219,0.860509862246441,0.354668382198357,0,0,0,0,0.269421344139376,0,0.454072282934794,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0.125118519871964,0.554128230968366,0,0.30648779579902,0,0.113432183160021,0.717558542755448,0.213557388818567,0,0.900273288253207,0.206105058476878,0.515281080091258,0.558350568994769,2.36286865137773,2.63079913935236,0.504867548488229,0.644349290496095,0.80823028409406,0,0.403008392910561,0.508681776931463,0.773043412653187,0,0.860413786167011,0,0,0,0.10366105501537,0,0,0,0.643240938192885,0,2.78620756819187,0,0,0.337169380156203,0,0.330881918197182,0.653638332277218,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0.441463099414651,0,0.343135620597051,0.878002283269004,0,0.100528972411631,0.370353780634118,0,1.03993478527958,0,0,0.117408694235822,0,0,0,0.790204397959275,0,0,0.234004265139238,0,0,0.839910640994298,0.708875486211932,0.716468181622786,0.581267877027924,0,0,0.088048434013226,0,0,0,0.317489471460845,0,0,0,0.102827492703324,0.600686115687835,0,0,0,0.22001485746285,0.387815147273333,3.57656445851882,0,0.26593811658487,0,0.257207374262142,0,0,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0.399891964728228,0,0,0,0,0,0,0.579125226670317,0.205476322550383,0.358121926479791,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,3.56857977594324,3.15404830067869,1.7571212248907,0,2.27407504055985,0,0.664225598535437,0.184369168541703,0.521301686808497,0,0.343143423810856,0.206768026122887,0,0,0,0,0.604780586659361,11.164851351845,9.36118037057181,4.2099014164961,4.86928767171664,6.14048698880044,2.73451665944133,1.48418066444991,0.154209693802656,0,0.0821271560138091,0,0,0,0.601519410909855,0.276242966807689,0.459257792658427,0,0.393373244878272,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.764628819135115,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0.650060246036521,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0.107420244868274,0,0,0.267096106940212,0.826424576804891,0,0.765676274967505,0,0,0.31481234683064,0,0.308033580176089,0,0,0.37064843820784,0.286249773483982,0.372158369359667,0,0.38126038784765,0,0,0.318203247925937,0,0.359744915166629,0.274537029736055,0.117812402345686,0,0,0,0,0.243713489631284,0,0.272999822815972,0,0,0,0,0.438450885253763,0,0.655894752046633,0,0,0,0,0,0.35667105148125,0.354761064070598,0.633322905892992,0,0,0,0.48111056362756,0,1.08890984861323,0.282431402330337,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0.307160702099232,0,0.562677665642051,0,0,0,0.398495976502139,0.552567831062295,0,0,0,0.933118762985422,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.834912883456661,0,0,0.174919999992391,0.724999575434793,0,0.508507300585533,0,0,0,0,0.885741385813839,0.361789315876224,1.52581736317083,0.774054819518572,0.591095237907095,0.438770794307945,0.10893846351899,0.278847488557207,0.615602068030377,0.455768223388005,0,0,0,0.31900115973192,0.366390373607449,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,1.41542379259422,0,1.40558667435203,0,0,0.242780379534093,0,0,0,0.947798694427319,0,0,0,0,0,0,0,0,0.173559738335131,0.489961987071888,0.0870592065804026,0.17472666824203,0.859930162358083,0.19351266257817,0.0730893170861856,0.246346371159628,0.0969890164884194,0.794305140223502,0.225980740780532,0,0,0.949661939338181,0.195551382734803,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,1.20084057741958,0.273810757783986,0,0.429765441419957,0,0.279282401272254,1.60412296808179,0,0.199679000498991,0.429226048136571,0.669514372325618,0.134366944973453,0.360299883542404,0,0,0,0,0,0.0846733320657845,0,1.49823746722733,0,0.137539436597234,0,1.799791132412,0,0.91124334987037,0,0.236417121897595,0.209818352539992,0,0,0.383830394638891,0,1.32418394073086,0,0.542999601753713,0.864221491201268,0,0,0.082092520749339,0.340776043570843,0.113312091520126,0,0,1.292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| |||
|short_description=p12@GRAMD3 | |||
}} |
Latest revision as of 01:15, 20 September 2015
Short description: | p12@GRAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_GRAMD3_5end |
Coexpression cluster: | C1274_Preadipocyte_Olfactory_Adipocyte_amniotic_serous_spindle_mesodermal |
Association with transcript: | 116bp_to_ENST00000505720, ENST00000513978, ENST00000514099_5end |
EntrezGene: | GRAMD3 |
HGNC: | 24911 |
UniProt: | D6RFH3D6R9P9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 5.24e-17 | 12 |
preadipocyte of the breast | 3.97e-14 | 3 |
omentum preadipocyte | 6.91e-14 | 3 |
adipocyte of omentum tissue | 9.82e-13 | 3 |
adipocyte of breast | 1.24e-09 | 2 |
fat cell | 2.34e-09 | 15 |
receptor cell | 6.09e-07 | 6 |
sensory epithelial cell | 6.09e-07 | 6 |
olfactory epithelial cell | 6.09e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
omentum | 7.54e-25 | 6 |
peritoneum | 7.54e-25 | 6 |
abdominal cavity | 7.54e-25 | 6 |
visceral peritoneum | 7.54e-25 | 6 |
cavity lining | 4.23e-12 | 12 |
serous membrane | 4.23e-12 | 12 |
breast | 7.73e-11 | 10 |
chest | 8.07e-10 | 11 |
multi cell component structure | 1.97e-09 | 2 |
neuron projection bundle | 1.97e-09 | 2 |
perirenal fat | 3.99e-09 | 2 |
neural tube | 1.78e-07 | 56 |
neural rod | 1.78e-07 | 56 |
future spinal cord | 1.78e-07 | 56 |
neural keel | 1.78e-07 | 56 |
neural plate | 2.18e-07 | 82 |
presumptive neural plate | 2.18e-07 | 82 |
neurectoderm | 6.58e-07 | 86 |