FFCP PHASE1:Mm9::chr3:5400650..5400662,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:5400650..5400662,+|id=chr3:5400650..5400662,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000120,2.18e-11,3;CL:0002613,2.57e-11,3;CL:0000117,4.48e-11,23;CL:0000337,4.48e-11,23;CL:0000540,2.69e-07,33;CL:0000047,2.69e-07,33;CL:0000031,2.69e-07,33;CL:0000404,2.69e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002102,4.72e-13,7;UBERON:0004710,4.72e-13,7;UBERON:0005419,4.72e-13,7;UBERON:0005417,4.72e-13,7;UBERON:0005729,4.72e-13,7;UBERON:0010708,2.16e-11,8;UBERON:0000026,2.07e-10,12;UBERON:0004708,2.07e-10,12;UBERON:0002101,2.07e-10,12;UBERON:0004357,2.07e-10,12;UBERON:0004347,2.07e-10,12;UBERON:0005732,2.07e-10,12;UBERON:0005733,2.07e-10,12;UBERON:0010707,1.44e-09,13;UBERON:0002420,2.80e-07,8;UBERON:0007245,2.80e-07,8;UBERON:0010009,2.80e-07,8;UBERON:0010011,2.80e-07,8;UBERON:0000454,2.80e-07,8;UBERON:0000369,5.74e-07,5;UBERON:0002435,5.74e-07,5;UBERON:0000204,5.74e-07,5;UBERON:0010082,5.74e-07,5|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,2.64495489636016,1.26766280701236,0,0,0,0,0,0,0,0.414758449233911,0,0,0,0.220868540951614,0.244981598429908,0.287536413054709,0,0,0.893811366596314,1.0752457327937,1.05509030184155,1.64677758484337,2.08365348222704,0,0.56276261003168,1.37518422999129,1.47314292736834,0.996601765593721,0.745597783301202,0.151452386666368,0.226714680320357,0.579728977403356,0,0.679971333707751,1.61910957491345,0,0,0.140444420131752,0.340860645156116,0.779358013808606,0.70667914902068,0.14084341977668,0,0,0,0.216491041011214,0,0,0.11418387971906,0,0.148442139064825,0.520455980298408,0.608930956624282,0,0.150722640552623,0.470354828542819,0,0.247194967734374,0.289198713839823,0,1.13236794963186,0.883366073841574,0.484875253135222,0,0.585561594023094,0,0,0,0,0,0,0.457500602818626,0.125654352112864,0,0,0.41557608911912,0.324482526135515,0.407357455401265,0,0,0,1.43132487258974,0.459804208866946,0.360124259610698,0.90422890701429,0.476255494059295,0.384341160854549,0.187403449119458,1.81092359517311,1.07783996466421,2.64748512234947,0.879755620819744,1.97276159184817,2.50242524303038,1.39300866608867,0.61734640922383,0,0,0,0,0,0.234526059981096,0.180062061461015,0,0.196764231747404,0.154267112887378,0,0.268273401399619,0,0,0.32833492815819,0,0,0,0,0.210289948564127,0,0,0,1.70630600428187,2.32236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0,0.474529061544512,0,0.251335208800269,0,0,0,0,0,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0.224862112384854,0.202860121388503,0,0.25462585178142,0.287696137450811,0,0,2.87536413054709,0.372140947668503,0.624075346229121,0,0,0,0,0,0,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0.221464689648775,0.159454768657487,0.163863314715738,0,0,0,0,0,0,0.321101179975584,0.117211686592203,0.163934945376675,0,0,0.390438744296638,0,0.238968797952552,0.222798674082394,0,0,0,0,0,0.141940085208269,0.35613120733451,0,0,0,0.971122544619926,0.906970670894253,0.377210159511796,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0.720244376125241,0.258717367565509,0,0.354680467284547,0.891844088010353,1.15184314421485,0,0.23467170806371,0,0,0,0.322928853391811,0.180938774784468,0.358117032009409,0.164140899745061,0,0.370850604021019,0,0,0.185194527369712,0,0,0,0,0,0,0,0.632671987162271,0.406638934253697,0.324016022465404,0.418176592028937,0,0.269728692769641,0.165306911450672,0,0,0,0,0,0,0.388902376688095,0.129159823477731,0.506868376472335,0.234714477291508,0.2604087696879,0.209718688851422,0.483168241652012,0,0,0,0,0,0,0,0,0.147689527174577,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0.453142408984205,0.51776031175182,3.32119512269365,1.99512436700516,0.170733605754134,0.972426868273176,0,0.551530525350042,0.222246727801615,0,0,0,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0.287177344778066,0.476293691283074,0.463537303779422,0.77163688185482,0.412085900803307,0.441596760403192,1.02860775715625,0.70990322463735,0.715308569841963,0.581385666529314,0.0941093804153306,0.169229215783353,0.548783918618318,0.263069711437843,0.543216455383447,0,0,0.197008964751127,0.409231043169689,0.154936841185966,0.385813221962283,0.749431733813838,0.467863216890817,0,0.956441660344217,0.220591419119515,0|short_description=p@chr3:5400650..5400662,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:5400650..5400662,+ | |||
|description=CAGE_peak_at_chr3:5400650..5400662,+ | |||
|id=chr3:5400650..5400662,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000120,2.18e-11,3;CL:0002613,2.57e-11,3;CL:0000117,4.48e-11,23;CL:0000337,4.48e-11,23;CL:0000540,2.69e-07,33;CL:0000047,2.69e-07,33;CL:0000031,2.69e-07,33;CL:0000404,2.69e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002102,4.72e-13,7;UBERON:0004710,4.72e-13,7;UBERON:0005419,4.72e-13,7;UBERON:0005417,4.72e-13,7;UBERON:0005729,4.72e-13,7;UBERON:0010708,2.16e-11,8;UBERON:0000026,2.07e-10,12;UBERON:0004708,2.07e-10,12;UBERON:0002101,2.07e-10,12;UBERON:0004357,2.07e-10,12;UBERON:0004347,2.07e-10,12;UBERON:0005732,2.07e-10,12;UBERON:0005733,2.07e-10,12;UBERON:0010707,1.44e-09,13;UBERON:0002420,2.80e-07,8;UBERON:0007245,2.80e-07,8;UBERON:0010009,2.80e-07,8;UBERON:0010011,2.80e-07,8;UBERON:0000454,2.80e-07,8;UBERON:0000369,5.74e-07,5;UBERON:0002435,5.74e-07,5;UBERON:0000204,5.74e-07,5;UBERON:0010082,5.74e-07,5 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,2.64495489636016,1.26766280701236,0,0,0,0,0,0,0,0.414758449233911,0,0,0,0.220868540951614,0.244981598429908,0.287536413054709,0,0,0.893811366596314,1.0752457327937,1.05509030184155,1.64677758484337,2.08365348222704,0,0.56276261003168,1.37518422999129,1.47314292736834,0.996601765593721,0.745597783301202,0.151452386666368,0.226714680320357,0.579728977403356,0,0.679971333707751,1.61910957491345,0,0,0.140444420131752,0.340860645156116,0.779358013808606,0.70667914902068,0.14084341977668,0,0,0,0.216491041011214,0,0,0.11418387971906,0,0.148442139064825,0.520455980298408,0.608930956624282,0,0.150722640552623,0.470354828542819,0,0.247194967734374,0.289198713839823,0,1.13236794963186,0.883366073841574,0.484875253135222,0,0.585561594023094,0,0,0,0,0,0,0.457500602818626,0.125654352112864,0,0,0.41557608911912,0.324482526135515,0.407357455401265,0,0,0,1.43132487258974,0.459804208866946,0.360124259610698,0.90422890701429,0.476255494059295,0.384341160854549,0.187403449119458,1.81092359517311,1.07783996466421,2.64748512234947,0.879755620819744,1.97276159184817,2.50242524303038,1.39300866608867,0.61734640922383,0,0,0,0,0,0.234526059981096,0.180062061461015,0,0.196764231747404,0.154267112887378,0,0.268273401399619,0,0,0.32833492815819,0,0,0,0,0.210289948564127,0,0,0,1.70630600428187,2.32236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0,0.474529061544512,0,0.251335208800269,0,0,0,0,0,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0.224862112384854,0.202860121388503,0,0.25462585178142,0.287696137450811,0,0,2.87536413054709,0.372140947668503,0.624075346229121,0,0,0,0,0,0,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0.221464689648775,0.159454768657487,0.163863314715738,0,0,0,0,0,0,0.321101179975584,0.117211686592203,0.163934945376675,0,0,0.390438744296638,0,0.238968797952552,0.222798674082394,0,0,0,0,0,0.141940085208269,0.35613120733451,0,0,0,0.971122544619926,0.906970670894253,0.377210159511796,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0.720244376125241,0.258717367565509,0,0.354680467284547,0.891844088010353,1.15184314421485,0,0.23467170806371,0,0,0,0.322928853391811,0.180938774784468,0.358117032009409,0.164140899745061,0,0.370850604021019,0,0,0.185194527369712,0,0,0,0,0,0,0,0.632671987162271,0.406638934253697,0.324016022465404,0.418176592028937,0,0.269728692769641,0.165306911450672,0,0,0,0,0,0,0.388902376688095,0.129159823477731,0.506868376472335,0.234714477291508,0.2604087696879,0.209718688851422,0.483168241652012,0,0,0,0,0,0,0,0,0.147689527174577,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0.453142408984205,0.51776031175182,3.32119512269365,1.99512436700516,0.170733605754134,0.972426868273176,0,0.551530525350042,0.222246727801615,0,0,0,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0.287177344778066,0.476293691283074,0.463537303779422,0.77163688185482,0.412085900803307,0.441596760403192,1.02860775715625,0.70990322463735,0.715308569841963,0.581385666529314,0.0941093804153306,0.169229215783353,0.548783918618318,0.263069711437843,0.543216455383447,0,0,0.197008964751127,0.409231043169689,0.154936841185966,0.385813221962283,0.749431733813838,0.467863216890817,0,0.956441660344217,0.220591419119515,0 | |||
|short_description=p@chr3:5400650..5400662,+ | |||
}} |
Latest revision as of 20:56, 3 August 2015
Short description: | p@chr3:5400650..5400662, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:5400650..5400662, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granule cell | 2.18e-11 | 3 |
striatum neuron | 2.57e-11 | 3 |
CNS neuron (sensu Vertebrata) | 4.48e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.48e-11 | 23 |
neuron | 2.69e-07 | 33 |
neuronal stem cell | 2.69e-07 | 33 |
neuroblast | 2.69e-07 | 33 |
electrically signaling cell | 2.69e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
forelimb | 4.72e-13 | 7 |
pectoral appendage | 4.72e-13 | 7 |
pectoral appendage bud | 4.72e-13 | 7 |
forelimb bud | 4.72e-13 | 7 |
forelimb/pectoral fin field | 4.72e-13 | 7 |
pectoral complex | 2.16e-11 | 8 |
appendage | 2.07e-10 | 12 |
paired limb/fin | 2.07e-10 | 12 |
limb | 2.07e-10 | 12 |
paired limb/fin bud | 2.07e-10 | 12 |
limb bud | 2.07e-10 | 12 |
limb/fin field | 2.07e-10 | 12 |
limb field | 2.07e-10 | 12 |
appendage girdle complex | 1.44e-09 | 13 |
basal ganglion | 2.80e-07 | 8 |
nuclear complex of neuraxis | 2.80e-07 | 8 |
aggregate regional part of brain | 2.80e-07 | 8 |
collection of basal ganglia | 2.80e-07 | 8 |
cerebral subcortex | 2.80e-07 | 8 |
corpus striatum | 5.74e-07 | 5 |
striatum | 5.74e-07 | 5 |
ventral part of telencephalon | 5.74e-07 | 5 |
future corpus striatum | 5.74e-07 | 5 |