FF:693-20I5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005816 | ||
|accession_numbers=CAGE;DRX009080;DRR009954;DRZ001379;DRZ002762 | |accession_numbers=CAGE;DRX009080;DRR009954;DRZ001379;DRZ002762;DRZ012729;DRZ014112 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0007029,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0007029,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:94981424..94981439,+!p1@Dlx3!2.39!273.96!Dlx3;;chr15:102751603..102751630,+!p1@Hoxc13!2.13!134.29!Hoxc13;;chr13:53568104..53568156,-!p1@Msx2!2.11!185.98!Msx2;;chr11:121380640..121380655,-!p1@Zfp750!2.09!195.05!Zfp750;;chr16:25801993..25802014,+!p1@Trp63!2.03!107.32!Trp63;;chr2:9800207..9800234,-!p1@Gata3!1.85!204.48!Gata3;;chr9:31720843..31720888,-!p1@Barx2!1.81!70.07!Barx2;;chr11:121380594..121380609,-!p2@Zfp750!1.80!104.09!Zfp750;;chr19:5560600..5560617,-!p1@Ovol1!1.79!73.41!Ovol1;;chr5:77543897..77543911,-!p2@Hopx!1.78!109.23!Hopx;;chr11:96880072..96880079,+!p1@Sp6!1.74!53.48!Sp6;;chr4:46356509..46356527,+!p1@Foxe1!1.70!48.82!Foxe1;;chr14:118636214..118636235,-!p1@Sox21!1.69!57.78!Sox21;;chr13:72766250..72766273,+!p1@Irx2!1.66!68.28!Irx2;;chr11:121380611..121380625,-!p3@Zfp750!1.64!51.57!Zfp750;;chr19:5560570..5560582,-!p2@Ovol1!1.64!42.62!Ovol1;;chr4:135129538..135129558,-!p1@Grhl3!1.60!57.42!Grhl3;;chr13:40829137..40829205,-!p1@Tfap2a!1.58!41.78!Tfap2a;;chr12:25257141..25257173,+!p1@Grhl1!1.51!63.39!Grhl1;;chr9:43013917..43013968,-!p1@Pou2f3!1.48!29.13!Pou2f3;;chr13:72766279..72766296,+!p2@Irx2!1.46!41.18!Irx2;;chr11:78200071..78200100,-!p1@Foxn1!1.46!27.93!Foxn1;;chr2:172375081..172375105,+!p1@Tfap2c!1.45!26.98!Tfap2c;;chr15:102751578..102751600,+!p2@Hoxc13!1.40!23.87!Hoxc13;;chr2:38206580..38206600,+!p2@Lhx2!1.38!28.53!Lhx2;;chr12:25257265..25257294,+!p2@Grhl1!1.37!22.68!Grhl1;;chr5:77543935..77543947,-!p4@Hopx!1.36!22.08!Hopx;;chr13:53568191..53568219,-!p2@Msx2!1.35!21.25!Msx2;;chr10:44178521..44178557,-!p1@Prdm1!1.34!36.89!Prdm1;;chr13:40825465..40825469,-!p2@Tfap2a!1.34!20.77!Tfap2a;;chr15:97738692..97738747,-!p1@Vdr!1.33!109.94!Vdr;;chr2:71384802..71384815,-!p1@Dlx2!1.31!23.87!Dlx2;;chr3:99057269..99057306,+!p1@Tbx15!1.31!23.40!Tbx15;;chr16:18587076..18587106,-!p1@Tbx1!1.30!27.10!Tbx1;;chr7:19946556..19946611,+!p1@Ppp1r13l!1.28!70.43!Ppp1r13l;;chr13:40826961..40827001,-!p4@Tfap2a!1.28!17.91!Tfap2a;;chr12:34642510..34642530,+!p1@Twist1!1.27!55.63!Twist1;;chr12:25257176..25257190,+!p3@Grhl1!1.27!19.82!Grhl1;;chr17:14011485..14011507,+!p2@Mllt4!1.26!17.07!Mllt4;;chr4:148178559..148178603,+!p1@Casz1!1.22!44.41!Casz1;;chr6:51382677..51382783,+!p1@Nfe2l3!1.21!38.44!Nfe2l3;;chr17:14011569..14011589,+!p8@Mllt4!1.21!15.16!Mllt4;;chr2:38206744..38206766,+!p1@Lhx2!1.20!17.79!Lhx2;;chr13:53568081..53568094,-!p3@Msx2!1.19!14.56!Msx2;;chr10:67000609..67000625,+!p1@Egr2!1.17!31.99!Egr2;;chr2:103251839..103251853,+!p5@Elf5!1.15!13.13!Elf5;;chr5:38215819..38215823,-!p1@Msx1!1.14!33.54!Msx1;;chr4:124334894..124334899,+!p1@Pou3f1!1.12!16.00!Pou3f1;;chr17:14011545..14011564,+!p6@Mllt4!1.12!12.30!Mllt4;;chr4:55545337..55545357,-!p1@Klf4!1.11!172.97!Klf4;;chr15:102087880..102087927,-!p2@Rarg!1.11!27.58!Rarg;;chr1:19199236..19199258,+!p1@Tfap2b!1.11!11.94!Tfap2b;;chr3:130813200..130813252,+!p1@Lef1!1.09!50.97!Lef1;;chr13:73397958..73397994,+!p1@Irx4!1.09!11.34!Irx4;;chr2:103143336..103143367,-!p1@Ehf!1.07!17.67!Ehf;;chr13:31650185..31650201,+!p1@Foxq1!1.04!35.57!Foxq1;;chr12:25257114..25257131,+!p4@Grhl1!1.04!13.13!Grhl1;;chr11:76485958..76485963,+!p1@Bhlha9!1.03!9.67!Bhlha9;;chr17:14011529..14011544,+!p7@Mllt4!1.03!9.67!Mllt4;;chr13:53568169..53568179,-!p4@Msx2!1.02!9.55!Msx2;;chr9:69137716..69137744,+!p1@Rora!1.01!59.69!Rora;;chr12:25257298..25257323,+!p5@Grhl1!1.01!9.31!Grhl1;;chr15:102828658..102828678,+!p1@Hoxc6!1.01!9.19!Hoxc6;;chr9:31721051..31721068,-!p3@Barx2!1.01!9.19!Barx2;;chr1:194979315..194979359,+!p1@Irf6!1.00!56.11!Irf6;;chr1:194979361..194979373,+!p2@Irf6!1.00!12.18!Irf6;;chr14:70477113..70477173,+!p1@Egr3!1.00!8.95!Egr3;;chr13:40829337..40829360,-!p5@Tfap2a!0.99!8.71!Tfap2a;;chr13:31898729..31898761,+!p1@Foxc1!0.97!20.89!Foxc1;;chr13:72101178..72101203,-!p1@Irx1!0.97!13.13!Irx1;;chr10:44178493..44178520,-!p3@Prdm1!0.97!11.70!Prdm1;;chr6:52176164..52176195,-!p1@Hoxa9!0.97!10.50!Hoxa9;;chr11:106128936..106128955,-!p4@Smarcd2!0.96!9.55!Smarcd2;;chr14:118636238..118636257,-!p2@Sox21!0.96!8.12!Sox21;;chr15:103170533..103170556,-!p1@Zfp385a!0.94!29.37!Zfp385a;;chr6:97941770..97941784,+!p4@Mitf!0.94!7.64!Mitf;;chr12:109242266..109242295,-!p1@Bcl11b!0.93!66.01!Bcl11b;;chr7:6649134..6649167,-!p1@Zim1!0.93!42.14!Zim1;;chr15:35225845..35225867,+!p1@Osr2!0.93!19.58!Osr2;;chr10:126778916..126778974,-!p1@Gli1!0.93!17.31!Gli1;;chr10:44178375..44178390,-!p2@Prdm1!0.93!10.39!Prdm1;;chr4:126413480..126413489,-!p1@Tfap2e!0.93!7.52!Tfap2e;;chr4:148178529..148178548,+!p3@Casz1!0.92!17.79!Casz1;;chr3:130813736..130813752,+!p3@Lef1!0.92!10.50!Lef1;;chr13:40824310..40824314,-!p6@Tfap2a!0.92!7.28!Tfap2a;;chr11:94981134..94981147,+!p2@Dlx3!0.92!7.28!Dlx3;;chr14:99697871..99697934,+!p1@Klf5!0.91!146.59!Klf5;;chr15:103170516..103170531,-!p2@Zfp385a!0.91!17.55!Zfp385a;;chr13:31898496..31898519,+!p3@Foxc1!0.91!11.70!Foxc1;;chr4:122673187..122673201,+!p2@Mycl1!0.90!12.53!Mycl1;;chr1:19202352..19202354,+!p2@Tfap2b!0.89!6.80!Tfap2b;;chr18:80909801..80909819,-!p1@Nfatc1!0.88!41.30!Nfatc1;;chr13:72766234..72766243,+!p3@Irx2!0.88!6.57!Irx2;;chr1:19199021..19199048,+!p8@Tfap2b!0.88!6.57!Tfap2b;;chr7:89137163..89137200,-!p1@Bnc1!0.86!7.64!Bnc1;;chr6:53523358..53523388,+!p1@Creb5!0.85!77.23!Creb5;;chr4:148275237..148275311,+!p2@Casz1!0.85!26.50!Casz1;;chr1:93698030..93698064,+!p1@Twist2!0.85!12.65!Twist2;;chr10:66998241..66998263,+!p2@Egr2!0.84!5.85!Egr2;;chr2:160192793..160192809,-!p1@Mafb!0.83!92.51!Mafb;;chr6:86619104..86619119,-!p1@Mxd1!0.82!48.70!Mxd1;;chr1:165243792..165243808,-!p1@Prrx1!0.82!21.13!Prrx1;;chr12:37835141..37835194,+!p1@Meox2!0.82!18.62!Meox2;;chr4:135129447..135129467,-!p2@Grhl3!0.82!6.80!Grhl3;;chr11:101646127..101646147,-!p5@Etv4!0.82!6.57!Etv4;;chr11:101646566..101646603,-!p1@Etv4!0.81!18.62!Etv4;;chr10:44178474..44178487,-!p4@Prdm1!0.81!8.12!Prdm1;;chr9:31720903..31720918,-!p2@Barx2!0.81!5.49!Barx2;;chr13:83643159..83643226,+!p3@Mef2c!0.80!5.25!Mef2c;;chr7:20162663..20162678,+!p1@Zfp296!0.79!7.04!Zfp296;;chr6:52167459..52167492,-!p1@Hoxa7!0.79!6.33!Hoxa7;;chr2:103143315..103143328,-!p2@Ehf!0.78!5.01!Ehf;;chr7:35904304..35904320,+!p1@Cebpa!0.77!110.54!Cebpa;;chr6:52167434..52167450,-!p3@Hoxa7!0.77!4.89!Hoxa7;;chr13:31898637..31898653,+!p2@Foxc1!0.76!8.83!Foxc1;;chr15:37163124..37163153,+!p3@Grhl2!0.76!4.77!Grhl2;;chr1:19199221..19199234,+!p6@Tfap2b!0.76!4.77!Tfap2b;;chr9:31720817..31720829,-!p5@Barx2!0.76!4.77!Barx2;;chr15:37162796..37162828,+!p1@Grhl2!0.75!8.12!Grhl2;;chr5:32438831..32438878,+!p1@Fosl2!0.74!51.57!Fosl2;;chr2:74542918..74542971,+!p1@Hoxd8!0.74!7.04!Hoxd8;;chr12:37835120..37835133,+!p2@Meox2!0.74!6.68!Meox2;;chr4:84321300..84321315,-!p2@Bnc2!0.74!5.61!Bnc2;;chr13:73398004..73398017,+!p2@Irx4!0.74!4.54!Irx4;;chr9:31720746..31720762,-!p4@Barx2!0.74!4.54!Barx2;;chr8:94881733..94881790,+!p1@Irx5!0.73!9.07!Irx5;;chr10:5636374..5636421,-!p1@Esr1!0.73!5.73!Esr1;;chr4:148178459..148178482,+!p4@Casz1!0.73!4.42!Casz1;;chr11:96143666..96143725,+!p1@Hoxb8!0.72!5.01!Hoxb8;;chr3:99044284..99044308,+!p4@Tbx15!0.72!4.30!Tbx15;;chr14:64562503..64562524,+!p1@Sox7!0.71!27.46!Sox7;;chr1:165243591..165243625,-!p2@Prrx1!0.71!6.57!Prrx1;;chr11:101646155..101646170,-!p3@Etv4!0.71!5.25!Etv4;;chr1:93698068..93698085,+!p2@Twist2!0.71!5.01!Twist2;;chr2:103252231..103252256,+!p4@Elf5!0.71!4.18!Elf5;;chr13:40826150..40826167,-!p3@Tfap2a!0.70!4.54!Tfap2a;;chr15:102751552..102751563,+!p3@Hoxc13!0.70!4.06!Hoxc13;;chr11:78200195..78200211,-!p2@Foxn1!0.70!4.06!Foxn1;;chr2:9800094..9800108,-!p3@Gata3!0.70!4.06!Gata3;;chr1:194979383..194979393,+!p3@Irf6!0.70!4.06!Irf6;;chr5:137042338..137042372,-!p5@Cux1!0.70!4.06!Cux1;;chr8:87502608..87502623,-!p1@Junb!0.69!72.34!Junb;;chr12:12948633..12948651,-!p1@Mycn!0.69!42.62!Mycn;;chr7:89137554..89137565,-!p2@Bnc1!0.69!3.94!Bnc1;;chr2:172375136..172375149,+!p2@Tfap2c!0.69!3.94!Tfap2c;;chr13:72101161..72101177,-!p2@Irx1!0.68!5.49!Irx1;;chr6:115372058..115372085,+!p3@Pparg!0.68!3.82!Pparg;;chr6:70906450..70906454,+!p1@Foxi3!0.68!3.82!Foxi3;;chr6:131338435..131338482,-!p1@Csda!0.67!406.70!Csda;;chr11:23980664..23980706,+!p2@Bcl11a!0.67!18.14!Bcl11a;;chr5:32438894..32438908,+!p2@Fosl2!0.67!8.59!Fosl2;;chr11:96153767..96153822,+!p1@Hoxb6!0.67!6.09!Hoxb6;;chr17:14011908..14011919,+!p13@Mllt4!0.67!3.70!Mllt4;;chr17:32506357..32506377,-!p3@Wiz!0.66!8.12!Wiz;;chr2:71367871..71367898,+!p1@Dlx1!0.66!3.58!Dlx1;;chr2:133377954..133377973,+!p1@Bmp2!0.65!12.53!Bmp2;;chr4:122673278..122673336,+!p1@Mycl1!0.65!12.41!Mycl1;;chr15:78994907..78994926,-!p1@Sox10!0.65!10.03!Sox10;;chr2:27532479..27532509,+!p3@Rxra!0.65!7.76!Rxra;;chr11:96147952..96147967,+!p1@Hoxb7!0.65!4.54!Hoxb7;;chr6:128250380..128250442,-!p2@Tead4!0.65!4.54!Tead4;;chr1:19199095..19199114,+!p5@Tfap2b!0.65!3.46!Tfap2b;;chr1:19199119..19199134,+!p4@Tfap2b!0.65!3.46!Tfap2b;;chr10:80599248..80599261,+!p3@Zbtb7a!0.64!6.45!Zbtb7a;;chr15:37162834..37162849,+!p2@Grhl2!0.64!4.18!Grhl2;;chr6:6832076..6832092,-!p1@Dlx5!0.64!4.06!Dlx5;;chr2:103251917..103251927,+!p9@Elf5!0.64!3.34!Elf5;;chr11:69468531..69468557,+!p1@Sox15!0.64!3.34!Sox15;;chr3:99057256..99057268,+!p3@Tbx15!0.64!3.34!Tbx15;;chr16:92697560..92697592,-!p2@Runx1!0.63!23.87!Runx1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.63!6.33!Zbtb7c;;chr15:102087737..102087801,-!p3@Rarg!0.63!5.85!Rarg;;chr10:44178575..44178590,-!p5@Prdm1!0.63!4.18!Prdm1;;chr15:50721942..50721987,-!p13@Trps1!0.63!3.94!Trps1;;chr15:102751568..102751573,+!p4@Hoxc13!0.63!3.22!Hoxc13;;chr15:102820964..102821006,+!p1@Hoxc8!0.63!3.22!Hoxc8;;chr6:52161666..52161711,-!p1@Hoxa6!0.63!3.22!Hoxa6;;chr2:74543397..74543435,+!p2@Hoxd8!0.63!3.22!Hoxd8;;chr3:99057677..99057730,+!p2@Tbx15!0.63!3.22!Tbx15;;chr2:103264245..103264268,+!p2@Elf5!0.63!3.22!Elf5;;chr10:67375368..67375433,-!p1@Zfp365!0.62!6.09!Zfp365;;chr4:122911086..122911112,+!p1@Heyl!0.61!43.45!Heyl;;chr6:52190467..52190500,-!p1@Hoxa10!0.61!3.10!Hoxa10;;chr11:78317000..78317005,+!p1@Sebox!0.61!3.10!Sebox;;chr11:106128919..106128933,-!p8@Smarcd2!0.61!3.10!Smarcd2;;chr13:48356475..48356492,+!p1@Id4!0.60!79.62!Id4;;chr1:120950098..120950132,-!p2@Gli2!0.60!7.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0,-!p1@C130039O16Rik!0.16!16.83!C130039O16Rik;;chr2:167363692..167363710,+!p1@Snai1!0.16!15.40!Snai1;;chrX:98449492..98449510,+!p1@Foxo4!0.16!13.01!Foxo4;;chr7:28645585..28645659,+!p1@Zfp607!0.16!11.82!Zfp607;;chr7:56136362..56136400,-!p1@E2f8!0.16!7.76!E2f8;;chr17:21587325..21587361,+!p1@Zfp51!0.16!7.16!Zfp51;;chr18:24178808..24178865,-!p2@Zfp191!0.16!6.33!Zfp191;;chr2:83499707..83499708,+!p6@Zc3h15!0.16!3.82!Zc3h15;;chr19:8876976..8877011,+!p1@Zbtb3!0.16!3.58!Zbtb3;;chr7:119822828..119822839,+!p4@Tead1!0.16!2.98!Tead1;;chr8:72520225..72520248,-!p9@Gatad2a!0.16!2.75!Gatad2a;;chr1:95651346..95651383,-!p3@Thap4!0.16!2.27!Thap4;;chr12:86940300..86940312,+!p2@Jdp2!0.16!2.27!Jdp2;;chr12:85658041..85658051,+!p3@Zfp410!0.16!2.27!Zfp410;;chr12:78063057..78063070,-!p3@Max!0.16!1.91!Max;;chr2:165818178..165818187,+!p3@Ncoa3!0.16!1.91!Ncoa3;;chr11:98636657..98636668,-!p6@Nr1d1!0.16!1.43!Nr1d1;;chr11:60036258..60036276,-!p3@Srebf1!0.16!1.43!Srebf1;;chr2:153067138..153067147,-!p3@Plagl2!0.16!1.31!Plagl2;;chr11:102177921..102177960,-!p9@Ubtf!0.16!1.07!Ubtf;;chr5:92391466..92391471,+!p2@Thap6!0.16!1.07!Thap6;;chr17:87153519..87153533,+!p5@Epas1!0.16!1.07!Epas1;;chr4:114581524..114581551,-!p1@Foxd2!0.16!1.07!Foxd2;;chr2:162880418..162880429,+!p4@Mybl2!0.16!0.84!Mybl2;;chr2:32219200..32219213,+!p5@Ciz1!0.16!0.84!Ciz1;;chr1:4486530..4486557,-!p4@Sox17!0.16!0.84!Sox17;;chrX:48559029..48559051,-!p7@Mbnl3!0.16!0.84!Mbnl3;;chr10:79390120..79390129,+!p4@Arid3a!0.16!0.60!Arid3a;;chr14:22806778..22806795,-!p5@Zfp503!0.16!0.60!Zfp503;;chr18:75527009..75527027,+!p1@Smad7!0.15!26.38!Smad7;;chr1:162836503..162836591,+!p1@Rc3h1!0.15!22.08!Rc3h1;;chr2:155299524..155299571,-!p1@Ncoa6!0.15!21.85!Ncoa6;;chr16:91044718..91044765,-!p2@Gcfc1!0.15!21.85!Gcfc1;;chr2:160698721..160698745,-!p1@Zhx3!0.15!17.43!Zhx3;;chr10:114821444..114821491,-!p1@Thap2!0.15!9.55!Thap2;;chr3:52072315..52072327,+!p2@Foxo1!0.15!7.28!Foxo1;;chr4:124805092..124805135,-!p2@Zc3h12a!0.15!4.66!Zc3h12a;;chr17:28369739..28369774,+!p2@Ppard!0.15!3.22!Ppard;;chr17:56970339..56970428,-!p1@Rfx2!0.15!3.22!Rfx2;;chr2:27532734..27532749,+!p2@Rxra!0.15!2.86!Rxra;;chr1:74634691..74634719,-!p2@Zfp142!0.15!2.39!Zfp142;;chr2:48805065..48805076,+!p4@Mbd5!0.15!2.39!Mbd5;;chr5:77524231..77524245,-!p3@Hopx!0.15!2.39!Hopx;;chr18:76401789..76401814,+!p4@Smad2!0.15!2.03!Smad2;;chr4:62626682..62626705,+!p2@Zfp618!0.15!2.03!Zfp618;;chr5:76733981..76734018,-!p3@Clock!0.15!1.91!Clock;;chr2:31428187..31428198,+!p3@Fubp3!0.15!1.79!Fubp3;;chr2:91035197..91035237,-!p1@Nr1h3!0.15!1.79!Nr1h3;;chr5:65194810..65194819,+!p9@Klf3!0.15!1.67!Klf3;;chr18:79306577..79306592,-!p3@Setbp1!0.15!1.67!Setbp1;;chr9:63869834..63869849,-!p5@Smad6!0.15!1.31!Smad6;;chr6:146744595..146744613,+!p2@Arntl2!0.15!1.31!Arntl2;;chr7:134376558..134376587,+!p2@Zfp553!0.15!1.31!Zfp553;;chr18:14131045..14131062,-!p3@Zfp521!0.15!1.19!Zfp521;;chr2:168032516..168032525,-!p5@Adnp!0.15!1.19!Adnp;;chr5:38611621..38611635,-!p2@Zbtb49!0.15!1.07!Zbtb49;;chr6:52114821..52114828,-!p1@Hoxa2!0.15!1.07!Hoxa2;;chr10:107769719..107769745,+!p4@Pawr!0.15!1.07!Pawr;;chr1:87546583..87546595,+!p1@Sp100!0.15!0.95!Sp100;;chr1:64168228..64168250,-!p7@Klf7!0.15!0.84!Klf7;;chr15:50720589..50720600,-!p12@Trps1!0.15!0.84!Trps1;;chr8:87237692..87237703,-!p12@Nfix!0.15!0.84!Nfix;;chr8:107033774..107033794,-!p1@Ccdc79!0.15!0.72!Ccdc79;;chr11:98636508..98636524,-!p3@Nr1d1!0.15!0.72!Nr1d1;;chr4:128483422..128483430,-!p6@Zfp362!0.15!0.72!Zfp362;; | |expression_enrichment_score=chr11:94981424..94981439,+!p1@Dlx3!2.39!273.96!Dlx3;;chr15:102751603..102751630,+!p1@Hoxc13!2.13!134.29!Hoxc13;;chr13:53568104..53568156,-!p1@Msx2!2.11!185.98!Msx2;;chr11:121380640..121380655,-!p1@Zfp750!2.09!195.05!Zfp750;;chr16:25801993..25802014,+!p1@Trp63!2.03!107.32!Trp63;;chr2:9800207..9800234,-!p1@Gata3!1.85!204.48!Gata3;;chr9:31720843..31720888,-!p1@Barx2!1.81!70.07!Barx2;;chr11:121380594..121380609,-!p2@Zfp750!1.80!104.09!Zfp750;;chr19:5560600..5560617,-!p1@Ovol1!1.79!73.41!Ovol1;;chr5:77543897..77543911,-!p2@Hopx!1.78!109.23!Hopx;;chr11:96880072..96880079,+!p1@Sp6!1.74!53.48!Sp6;;chr4:46356509..46356527,+!p1@Foxe1!1.70!48.82!Foxe1;;chr14:118636214..118636235,-!p1@Sox21!1.69!57.78!Sox21;;chr13:72766250..72766273,+!p1@Irx2!1.66!68.28!Irx2;;chr11:121380611..121380625,-!p3@Zfp750!1.64!51.57!Zfp750;;chr19:5560570..5560582,-!p2@Ovol1!1.64!42.62!Ovol1;;chr4:135129538..135129558,-!p1@Grhl3!1.60!57.42!Grhl3;;chr13:40829137..40829205,-!p1@Tfap2a!1.58!41.78!Tfap2a;;chr12:25257141..25257173,+!p1@Grhl1!1.51!63.39!Grhl1;;chr9:43013917..43013968,-!p1@Pou2f3!1.48!29.13!Pou2f3;;chr13:72766279..72766296,+!p2@Irx2!1.46!41.18!Irx2;;chr11:78200071..78200100,-!p1@Foxn1!1.46!27.93!Foxn1;;chr2:172375081..172375105,+!p1@Tfap2c!1.45!26.98!Tfap2c;;chr15:102751578..102751600,+!p2@Hoxc13!1.40!23.87!Hoxc13;;chr2:38206580..38206600,+!p2@Lhx2!1.38!28.53!Lhx2;;chr12:25257265..25257294,+!p2@Grhl1!1.37!22.68!Grhl1;;chr5:77543935..77543947,-!p4@Hopx!1.36!22.08!Hopx;;chr13:53568191..53568219,-!p2@Msx2!1.35!21.25!Msx2;;chr10:44178521..44178557,-!p1@Prdm1!1.34!36.89!Prdm1;;chr13:40825465..40825469,-!p2@Tfap2a!1.34!20.77!Tfap2a;;chr15:97738692..97738747,-!p1@Vdr!1.33!109.94!Vdr;;chr2:71384802..71384815,-!p1@Dlx2!1.31!23.87!Dlx2;;chr3:99057269..99057306,+!p1@Tbx15!1.31!23.40!Tbx15;;chr16:18587076..18587106,-!p1@Tbx1!1.30!27.10!Tbx1;;chr7:19946556..19946611,+!p1@Ppp1r13l!1.28!70.43!Ppp1r13l;;chr13:40826961..40827001,-!p4@Tfap2a!1.28!17.91!Tfap2a;;chr12:34642510..34642530,+!p1@Twist1!1.27!55.63!Twist1;;chr12:25257176..25257190,+!p3@Grhl1!1.27!19.82!Grhl1;;chr17:14011485..14011507,+!p2@Mllt4!1.26!17.07!Mllt4;;chr4:148178559..148178603,+!p1@Casz1!1.22!44.41!Casz1;;chr6:51382677..51382783,+!p1@Nfe2l3!1.21!38.44!Nfe2l3;;chr17:14011569..14011589,+!p8@Mllt4!1.21!15.16!Mllt4;;chr2:38206744..38206766,+!p1@Lhx2!1.20!17.79!Lhx2;;chr13:53568081..53568094,-!p3@Msx2!1.19!14.56!Msx2;;chr10:67000609..67000625,+!p1@Egr2!1.17!31.99!Egr2;;chr2:103251839..103251853,+!p5@Elf5!1.15!13.13!Elf5;;chr5:38215819..38215823,-!p1@Msx1!1.14!33.54!Msx1;;chr4:124334894..124334899,+!p1@Pou3f1!1.12!16.00!Pou3f1;;chr17:14011545..14011564,+!p6@Mllt4!1.12!12.30!Mllt4;;chr4:55545337..55545357,-!p1@Klf4!1.11!172.97!Klf4;;chr15:102087880..102087927,-!p2@Rarg!1.11!27.58!Rarg;;chr1:19199236..19199258,+!p1@Tfap2b!1.11!11.94!Tfap2b;;chr3:130813200..130813252,+!p1@Lef1!1.09!50.97!Lef1;;chr13:73397958..73397994,+!p1@Irx4!1.09!11.34!Irx4;;chr2:103143336..103143367,-!p1@Ehf!1.07!17.67!Ehf;;chr13:31650185..31650201,+!p1@Foxq1!1.04!35.57!Foxq1;;chr12:25257114..25257131,+!p4@Grhl1!1.04!13.13!Grhl1;;chr11:76485958..76485963,+!p1@Bhlha9!1.03!9.67!Bhlha9;;chr17:14011529..14011544,+!p7@Mllt4!1.03!9.67!Mllt4;;chr13:53568169..53568179,-!p4@Msx2!1.02!9.55!Msx2;;chr9:69137716..69137744,+!p1@Rora!1.01!59.69!Rora;;chr12:25257298..25257323,+!p5@Grhl1!1.01!9.31!Grhl1;;chr15:102828658..102828678,+!p1@Hoxc6!1.01!9.19!Hoxc6;;chr9:31721051..31721068,-!p3@Barx2!1.01!9.19!Barx2;;chr1:194979315..194979359,+!p1@Irf6!1.00!56.11!Irf6;;chr1:194979361..194979373,+!p2@Irf6!1.00!12.18!Irf6;;chr14:70477113..70477173,+!p1@Egr3!1.00!8.95!Egr3;;chr13:40829337..40829360,-!p5@Tfap2a!0.99!8.71!Tfap2a;;chr13:31898729..31898761,+!p1@Foxc1!0.97!20.89!Foxc1;;chr13:72101178..72101203,-!p1@Irx1!0.97!13.13!Irx1;;chr10:44178493..44178520,-!p3@Prdm1!0.97!11.70!Prdm1;;chr6:52176164..52176195,-!p1@Hoxa9!0.97!10.50!Hoxa9;;chr11:106128936..106128955,-!p4@Smarcd2!0.96!9.55!Smarcd2;;chr14:118636238..118636257,-!p2@Sox21!0.96!8.12!Sox21;;chr15:103170533..103170556,-!p1@Zfp385a!0.94!29.37!Zfp385a;;chr6:97941770..97941784,+!p4@Mitf!0.94!7.64!Mitf;;chr12:109242266..109242295,-!p1@Bcl11b!0.93!66.01!Bcl11b;;chr7:6649134..6649167,-!p1@Zim1!0.93!42.14!Zim1;;chr15:35225845..35225867,+!p1@Osr2!0.93!19.58!Osr2;;chr10:126778916..126778974,-!p1@Gli1!0.93!17.31!Gli1;;chr10:44178375..44178390,-!p2@Prdm1!0.93!10.39!Prdm1;;chr4:126413480..126413489,-!p1@Tfap2e!0.93!7.52!Tfap2e;;chr4:148178529..148178548,+!p3@Casz1!0.92!17.79!Casz1;;chr3:130813736..130813752,+!p3@Lef1!0.92!10.50!Lef1;;chr13:40824310..40824314,-!p6@Tfap2a!0.92!7.28!Tfap2a;;chr11:94981134..94981147,+!p2@Dlx3!0.92!7.28!Dlx3;;chr14:99697871..99697934,+!p1@Klf5!0.91!146.59!Klf5;;chr15:103170516..103170531,-!p2@Zfp385a!0.91!17.55!Zfp385a;;chr13:31898496..31898519,+!p3@Foxc1!0.91!11.70!Foxc1;;chr4:122673187..122673201,+!p2@Mycl1!0.90!12.53!Mycl1;;chr1:19202352..19202354,+!p2@Tfap2b!0.89!6.80!Tfap2b;;chr18:80909801..80909819,-!p1@Nfatc1!0.88!41.30!Nfatc1;;chr13:72766234..72766243,+!p3@Irx2!0.88!6.57!Irx2;;chr1:19199021..19199048,+!p8@Tfap2b!0.88!6.57!Tfap2b;;chr7:89137163..89137200,-!p1@Bnc1!0.86!7.64!Bnc1;;chr6:53523358..53523388,+!p1@Creb5!0.85!77.23!Creb5;;chr4:148275237..148275311,+!p2@Casz1!0.85!26.50!Casz1;;chr1:93698030..93698064,+!p1@Twist2!0.85!12.65!Twist2;;chr10:66998241..66998263,+!p2@Egr2!0.84!5.85!Egr2;;chr2:160192793..160192809,-!p1@Mafb!0.83!92.51!Mafb;;chr6:86619104..86619119,-!p1@Mxd1!0.82!48.70!Mxd1;;chr1:165243792..165243808,-!p1@Prrx1!0.82!21.13!Prrx1;;chr12:37835141..37835194,+!p1@Meox2!0.82!18.62!Meox2;;chr4:135129447..135129467,-!p2@Grhl3!0.82!6.80!Grhl3;;chr11:101646127..101646147,-!p5@Etv4!0.82!6.57!Etv4;;chr11:101646566..101646603,-!p1@Etv4!0.81!18.62!Etv4;;chr10:44178474..44178487,-!p4@Prdm1!0.81!8.12!Prdm1;;chr9:31720903..31720918,-!p2@Barx2!0.81!5.49!Barx2;;chr13:83643159..83643226,+!p3@Mef2c!0.80!5.25!Mef2c;;chr7:20162663..20162678,+!p1@Zfp296!0.79!7.04!Zfp296;;chr6:52167459..52167492,-!p1@Hoxa7!0.79!6.33!Hoxa7;;chr2:103143315..103143328,-!p2@Ehf!0.78!5.01!Ehf;;chr7:35904304..35904320,+!p1@Cebpa!0.77!110.54!Cebpa;;chr6:52167434..52167450,-!p3@Hoxa7!0.77!4.89!Hoxa7;;chr13:31898637..31898653,+!p2@Foxc1!0.76!8.83!Foxc1;;chr15:37163124..37163153,+!p3@Grhl2!0.76!4.77!Grhl2;;chr1:19199221..19199234,+!p6@Tfap2b!0.76!4.77!Tfap2b;;chr9:31720817..31720829,-!p5@Barx2!0.76!4.77!Barx2;;chr15:37162796..37162828,+!p1@Grhl2!0.75!8.12!Grhl2;;chr5:32438831..32438878,+!p1@Fosl2!0.74!51.57!Fosl2;;chr2:74542918..74542971,+!p1@Hoxd8!0.74!7.04!Hoxd8;;chr12:37835120..37835133,+!p2@Meox2!0.74!6.68!Meox2;;chr4:84321300..84321315,-!p2@Bnc2!0.74!5.61!Bnc2;;chr13:73398004..73398017,+!p2@Irx4!0.74!4.54!Irx4;;chr9:31720746..31720762,-!p4@Barx2!0.74!4.54!Barx2;;chr8:94881733..94881790,+!p1@Irx5!0.73!9.07!Irx5;;chr10:5636374..5636421,-!p1@Esr1!0.73!5.73!Esr1;;chr4:148178459..148178482,+!p4@Casz1!0.73!4.42!Casz1;;chr11:96143666..96143725,+!p1@Hoxb8!0.72!5.01!Hoxb8;;chr3:99044284..99044308,+!p4@Tbx15!0.72!4.30!Tbx15;;chr14:64562503..64562524,+!p1@Sox7!0.71!27.46!Sox7;;chr1:165243591..165243625,-!p2@Prrx1!0.71!6.57!Prrx1;;chr11:101646155..101646170,-!p3@Etv4!0.71!5.25!Etv4;;chr1:93698068..93698085,+!p2@Twist2!0.71!5.01!Twist2;;chr2:103252231..103252256,+!p4@Elf5!0.71!4.18!Elf5;;chr13:40826150..40826167,-!p3@Tfap2a!0.70!4.54!Tfap2a;;chr15:102751552..102751563,+!p3@Hoxc13!0.70!4.06!Hoxc13;;chr11:78200195..78200211,-!p2@Foxn1!0.70!4.06!Foxn1;;chr2:9800094..9800108,-!p3@Gata3!0.70!4.06!Gata3;;chr1:194979383..194979393,+!p3@Irf6!0.70!4.06!Irf6;;chr5:137042338..137042372,-!p5@Cux1!0.70!4.06!Cux1;;chr8:87502608..87502623,-!p1@Junb!0.69!72.34!Junb;;chr12:12948633..12948651,-!p1@Mycn!0.69!42.62!Mycn;;chr7:89137554..89137565,-!p2@Bnc1!0.69!3.94!Bnc1;;chr2:172375136..172375149,+!p2@Tfap2c!0.69!3.94!Tfap2c;;chr13:72101161..72101177,-!p2@Irx1!0.68!5.49!Irx1;;chr6:115372058..115372085,+!p3@Pparg!0.68!3.82!Pparg;;chr6:70906450..70906454,+!p1@Foxi3!0.68!3.82!Foxi3;;chr6:131338435..131338482,-!p1@Csda!0.67!406.70!Csda;;chr11:23980664..23980706,+!p2@Bcl11a!0.67!18.14!Bcl11a;;chr5:32438894..32438908,+!p2@Fosl2!0.67!8.59!Fosl2;;chr11:96153767..96153822,+!p1@Hoxb6!0.67!6.09!Hoxb6;;chr17:14011908..14011919,+!p13@Mllt4!0.67!3.70!Mllt4;;chr17:32506357..32506377,-!p3@Wiz!0.66!8.12!Wiz;;chr2:71367871..71367898,+!p1@Dlx1!0.66!3.58!Dlx1;;chr2:133377954..133377973,+!p1@Bmp2!0.65!12.53!Bmp2;;chr4:122673278..122673336,+!p1@Mycl1!0.65!12.41!Mycl1;;chr15:78994907..78994926,-!p1@Sox10!0.65!10.03!Sox10;;chr2:27532479..27532509,+!p3@Rxra!0.65!7.76!Rxra;;chr11:96147952..96147967,+!p1@Hoxb7!0.65!4.54!Hoxb7;;chr6:128250380..128250442,-!p2@Tead4!0.65!4.54!Tead4;;chr1:19199095..19199114,+!p5@Tfap2b!0.65!3.46!Tfap2b;;chr1:19199119..19199134,+!p4@Tfap2b!0.65!3.46!Tfap2b;;chr10:80599248..80599261,+!p3@Zbtb7a!0.64!6.45!Zbtb7a;;chr15:37162834..37162849,+!p2@Grhl2!0.64!4.18!Grhl2;;chr6:6832076..6832092,-!p1@Dlx5!0.64!4.06!Dlx5;;chr2:103251917..103251927,+!p9@Elf5!0.64!3.34!Elf5;;chr11:69468531..69468557,+!p1@Sox15!0.64!3.34!Sox15;;chr3:99057256..99057268,+!p3@Tbx15!0.64!3.34!Tbx15;;chr16:92697560..92697592,-!p2@Runx1!0.63!23.87!Runx1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.63!6.33!Zbtb7c;;chr15:102087737..102087801,-!p3@Rarg!0.63!5.85!Rarg;;chr10:44178575..44178590,-!p5@Prdm1!0.63!4.18!Prdm1;;chr15:50721942..50721987,-!p13@Trps1!0.63!3.94!Trps1;;chr15:102751568..102751573,+!p4@Hoxc13!0.63!3.22!Hoxc13;;chr15:102820964..102821006,+!p1@Hoxc8!0.63!3.22!Hoxc8;;chr6:52161666..52161711,-!p1@Hoxa6!0.63!3.22!Hoxa6;;chr2:74543397..74543435,+!p2@Hoxd8!0.63!3.22!Hoxd8;;chr3:99057677..99057730,+!p2@Tbx15!0.63!3.22!Tbx15;;chr2:103264245..103264268,+!p2@Elf5!0.63!3.22!Elf5;;chr10:67375368..67375433,-!p1@Zfp365!0.62!6.09!Zfp365;;chr4:122911086..122911112,+!p1@Heyl!0.61!43.45!Heyl;;chr6:52190467..52190500,-!p1@Hoxa10!0.61!3.10!Hoxa10;;chr11:78317000..78317005,+!p1@Sebox!0.61!3.10!Sebox;;chr11:106128919..106128933,-!p8@Smarcd2!0.61!3.10!Smarcd2;;chr13:48356475..48356492,+!p1@Id4!0.60!79.62!Id4;;chr1:120950098..120950132,-!p2@Gli2!0.60!7.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| ||
Line 44: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11097 | |library_id=CNhs11097 | ||
| | |library_id_phase_based=2:CNhs11097 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;693 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;693 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N06.CNhs11097.693-20I5.mm9.nobarcode.rdna.fa.gz | |||
|name=skin, neonate N06 | |name=skin, neonate N06 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11097,LSID733,release008,COMPLETED | |profile_hcage=CNhs11097,LSID733,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.0513269984940885,0,0,0,0.0489745727197172,0,0.17133017171633,0,0.0244872863598586,0,0,0.150237277253472,0,0,0,0,0,0,0.0992486906813309,0,0.084762183370313,0,0,0.0489745727197172,0.0489745727197172,0,0,0,0,0,0,0,0.203121206661678,0,0,0,0,0,0.0338805904494466,0,0.0631031338413672,0.15481216129821,-0.176886832857694,0,0,0,0,0,0,0.954143433068511,0,0,0,0,0,-0.0170309748437232,0.0489745727197172,0,0,0,0.0501348500697829,0,0.0256805034732585,0,0,0.0469719253530377,0.111511644561026,0.116057832386098,0.287604237611136,-0.00246131921756153,0,0.0986687398092135,0,0,0.0929818051526577,0,0.0310934612837701,-0.103593867772873,-0.0510015020886671,0.124435715265848,0,0,0,0,0,0,-0.050351473411983,0.0604650127506758,-0.0508810883535145,0,0,0,0,0 | |repeat_enrich_byfamily=-0.0513269984940885,0,0,0,0.0489745727197172,0,0.17133017171633,0,0.0244872863598586,0,0,0.150237277253472,0,0,0,0,0,0,0.0992486906813309,0,0.084762183370313,0,0,0.0489745727197172,0.0489745727197172,0,0,0,0,0,0,0,0.203121206661678,0,0,0,0,0,0.0338805904494466,0,0.0631031338413672,0.15481216129821,-0.176886832857694,0,0,0,0,0,0,0.954143433068511,0,0,0,0,0,-0.0170309748437232,0.0489745727197172,0,0,0,0.0501348500697829,0,0.0256805034732585,0,0,0.0469719253530377,0.111511644561026,0.116057832386098,0.287604237611136,-0.00246131921756153,0,0.0986687398092135,0,0,0.0929818051526577,0,0.0310934612837701,-0.103593867772873,-0.0510015020886671,0.124435715265848,0,0,0,0,0,0,-0.050351473411983,0.0604650127506758,-0.0508810883535145,0,0,0,0,0 | ||
Line 87: | Line 97: | ||
|top_motifs=TBP:3.52305756076;NANOG:3.48095676534;VSX1,2:3.44479265247;FOS_FOS{B,L1}_JUN{B,D}:3.08110848642;LEF1_TCF7_TCF7L1,2:3.07025773292;HOX{A4,D4}:2.91926902701;FOSL2:2.42407306884;BACH2:2.38755720262;GLI1..3:2.24782917819;T:2.21858942635;FOX{I1,J2}:2.20554407767;PDX1:2.1066960869;TP53:2.09956256433;SPZ1:2.07174778066;TFCP2:1.97631858023;TEF:1.9431061091;FOXQ1:1.74466306552;EN1,2:1.57529365604;ZNF148:1.53865621292;GCM1,2:1.464001456;TOPORS:1.45949788623;FOXO1,3,4:1.38550808278;MYOD1:1.37899114547;TEAD1:1.37331796723;ALX1:1.35371204264;HMX1:1.32985031571;SP1:1.28477776096;NKX2-3_NKX2-5:1.26235940221;AIRE:1.25317169748;HSF1,2:1.25237156746;SNAI1..3:1.24289846319;TFAP2{A,C}:1.18137809306;SMAD1..7,9:1.17887547611;HLF:1.14023773865;XCPE1{core}:1.11661357486;TFAP4:1.10455156399;GFI1B:1.09813342608;GATA4:1.0862851477;NKX6-1,2:1.07411277907;NKX2-1,4:1.05668226209;MYFfamily:1.04572990371;TBX4,5:1.04075600118;CRX:1.01122105773;POU3F1..4:0.99523767145;NFE2L2:0.960462622051;CEBPA,B_DDIT3:0.936838528416;FOXP1:0.885914893044;ESR1:0.852298182458;NKX3-2:0.851007759384;ZEB1:0.831902484728;LHX3,4:0.825709831239;NFE2:0.813001143992;ZNF238:0.800685275025;TAL1_TCF{3,4,12}:0.783550509055;PAX5:0.7826462772;IKZF1:0.781808621802;SREBF1,2:0.743626485831;GFI1:0.72103744805;CDC5L:0.6922639568;NFATC1..3:0.65560994494;FOXL1:0.654337078113;GTF2A1,2:0.6327242036;SOX5:0.624979729171;POU2F1..3:0.598556963209;EP300:0.57915429897;ATF2:0.569964681148;ALX4:0.564581185828;HAND1,2:0.559414735769;PITX1..3:0.54827964044;NKX3-1:0.545211323796;GTF2I:0.535595472142;EBF1:0.514067618748;ATF4:0.511503492433;DBP:0.447182554709;NFE2L1:0.393594310286;bHLH_family:0.384250589973;MYBL2:0.350302455213;STAT5{A,B}:0.346842646263;ZNF384:0.341467403916;TLX1..3_NFIC{dimer}:0.316994055222;POU6F1:0.297924654604;PAX2:0.290501595102;FOXN1:0.279425823537;MAZ:0.270257733125;IKZF2:0.26653476771;ATF6:0.26204797894;TLX2:0.24943763651;PRRX1,2:0.240179808473;SRF:0.238848031525;HMGA1,2:0.220593318191;HOXA9_MEIS1:0.196144918461;RORA:0.18912693629;E2F1..5:0.161818489482;KLF4:0.157590487523;MEF2{A,B,C,D}:0.0887177990577;NKX2-2,8:0.0854131876424;PAX8:0.0660578987532;FOXP3:0.0566513343732;FOXM1:0.0528733955949;TGIF1:0.0511219429153;MAFB:0.0478504057146;EGR1..3:0.0181883090702;HIC1:0.00582818672824;SOX2:-0.00123912148971;FOX{D1,D2}:-0.010332878844;STAT1,3:-0.0255386827309;HES1:-0.0288113508514;GZF1:-0.0495519453678;SOX{8,9,10}:-0.0500374192706;PATZ1:-0.0631597979789;MTF1:-0.0840404607089;FOX{F1,F2,J1}:-0.0907025510537;BPTF:-0.105715725221;MTE{core}:-0.115562040235;NHLH1,2:-0.119214244758;NFKB1_REL_RELA:-0.126969581437;DMAP1_NCOR{1,2}_SMARC:-0.12827732772;POU1F1:-0.129361622968;TFDP1:-0.144469078192;BREu{core}:-0.14786806892;MED-1{core}:-0.148179254009;SPIB:-0.1699538019;POU5F1:-0.186226895394;RFX2..5_RFXANK_RFXAP:-0.197026829803;SOX17:-0.199845707546;RUNX1..3:-0.216425110321;TFAP2B:-0.221146070275;HIF1A:-0.234004285968;SPI1:-0.237904843657;PPARG:-0.249377679938;STAT2,4,6:-0.251815527008;NR3C1:-0.268382217165;ETS1,2:-0.295906539105;ZIC1..3:-0.298988640336;NFIX:-0.300955798752;RBPJ:-0.301847160227;ELK1,4_GABP{A,B1}:-0.304074191641;HOX{A5,B5}:-0.313746660864;RREB1:-0.324361117438;IRF1,2:-0.334746368554;RXRA_VDR{dimer}:-0.34120536818;MYB:-0.344267078259;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.347125783211;REST:-0.350433138761;ZBTB6:-0.36339673073;MZF1:-0.401929366912;PAX4:-0.405372770664;NFY{A,B,C}:-0.405573391657;LMO2:-0.417745319409;PAX1,9:-0.427914097616;ZNF143:-0.436647797716;PRDM1:-0.437064746568;ZFP161:-0.44199352675;ELF1,2,4:-0.460592229698;ZNF423:-0.499568328753;HBP1_HMGB_SSRP1_UBTF:-0.501173507147;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.503295382943;HNF4A_NR2F1,2:-0.508767982864;NR6A1:-0.519280321892;ATF5_CREB3:-0.524928007576;IRF7:-0.542099305324;FOXA2:-0.556904497729;NANOG{mouse}:-0.617298186137;CDX1,2,4:-0.62369171462;ADNP_IRX_SIX_ZHX:-0.649292648754;NFIL3:-0.649939350273;PAX6:-0.650589153175;AHR_ARNT_ARNT2:-0.665205454989;ZBTB16:-0.667907197651;HNF1A:-0.669778662747;GATA6:-0.680983289833;ONECUT1,2:-0.696693048936;NRF1:-0.703173774299;CREB1:-0.704027796425;UFEwm:-0.711847013621;RFX1:-0.737307584115;ARID5B:-0.800814518508;OCT4_SOX2{dimer}:-0.871480688143;ESRRA:-0.951067189693;JUN:-0.961600029681;NR5A1,2:-0.974683675391;EVI1:-0.990182424262;RXR{A,B,G}:-1.03981178366;CUX2:-1.04102253818;FOXD3:-1.33573063919;YY1:-1.35397547495;AR:-1.40293271218;PBX1:-1.79772649273;NR1H4:-1.94198412722 | |top_motifs=TBP:3.52305756076;NANOG:3.48095676534;VSX1,2:3.44479265247;FOS_FOS{B,L1}_JUN{B,D}:3.08110848642;LEF1_TCF7_TCF7L1,2:3.07025773292;HOX{A4,D4}:2.91926902701;FOSL2:2.42407306884;BACH2:2.38755720262;GLI1..3:2.24782917819;T:2.21858942635;FOX{I1,J2}:2.20554407767;PDX1:2.1066960869;TP53:2.09956256433;SPZ1:2.07174778066;TFCP2:1.97631858023;TEF:1.9431061091;FOXQ1:1.74466306552;EN1,2:1.57529365604;ZNF148:1.53865621292;GCM1,2:1.464001456;TOPORS:1.45949788623;FOXO1,3,4:1.38550808278;MYOD1:1.37899114547;TEAD1:1.37331796723;ALX1:1.35371204264;HMX1:1.32985031571;SP1:1.28477776096;NKX2-3_NKX2-5:1.26235940221;AIRE:1.25317169748;HSF1,2:1.25237156746;SNAI1..3:1.24289846319;TFAP2{A,C}:1.18137809306;SMAD1..7,9:1.17887547611;HLF:1.14023773865;XCPE1{core}:1.11661357486;TFAP4:1.10455156399;GFI1B:1.09813342608;GATA4:1.0862851477;NKX6-1,2:1.07411277907;NKX2-1,4:1.05668226209;MYFfamily:1.04572990371;TBX4,5:1.04075600118;CRX:1.01122105773;POU3F1..4:0.99523767145;NFE2L2:0.960462622051;CEBPA,B_DDIT3:0.936838528416;FOXP1:0.885914893044;ESR1:0.852298182458;NKX3-2:0.851007759384;ZEB1:0.831902484728;LHX3,4:0.825709831239;NFE2:0.813001143992;ZNF238:0.800685275025;TAL1_TCF{3,4,12}:0.783550509055;PAX5:0.7826462772;IKZF1:0.781808621802;SREBF1,2:0.743626485831;GFI1:0.72103744805;CDC5L:0.6922639568;NFATC1..3:0.65560994494;FOXL1:0.654337078113;GTF2A1,2:0.6327242036;SOX5:0.624979729171;POU2F1..3:0.598556963209;EP300:0.57915429897;ATF2:0.569964681148;ALX4:0.564581185828;HAND1,2:0.559414735769;PITX1..3:0.54827964044;NKX3-1:0.545211323796;GTF2I:0.535595472142;EBF1:0.514067618748;ATF4:0.511503492433;DBP:0.447182554709;NFE2L1:0.393594310286;bHLH_family:0.384250589973;MYBL2:0.350302455213;STAT5{A,B}:0.346842646263;ZNF384:0.341467403916;TLX1..3_NFIC{dimer}:0.316994055222;POU6F1:0.297924654604;PAX2:0.290501595102;FOXN1:0.279425823537;MAZ:0.270257733125;IKZF2:0.26653476771;ATF6:0.26204797894;TLX2:0.24943763651;PRRX1,2:0.240179808473;SRF:0.238848031525;HMGA1,2:0.220593318191;HOXA9_MEIS1:0.196144918461;RORA:0.18912693629;E2F1..5:0.161818489482;KLF4:0.157590487523;MEF2{A,B,C,D}:0.0887177990577;NKX2-2,8:0.0854131876424;PAX8:0.0660578987532;FOXP3:0.0566513343732;FOXM1:0.0528733955949;TGIF1:0.0511219429153;MAFB:0.0478504057146;EGR1..3:0.0181883090702;HIC1:0.00582818672824;SOX2:-0.00123912148971;FOX{D1,D2}:-0.010332878844;STAT1,3:-0.0255386827309;HES1:-0.0288113508514;GZF1:-0.0495519453678;SOX{8,9,10}:-0.0500374192706;PATZ1:-0.0631597979789;MTF1:-0.0840404607089;FOX{F1,F2,J1}:-0.0907025510537;BPTF:-0.105715725221;MTE{core}:-0.115562040235;NHLH1,2:-0.119214244758;NFKB1_REL_RELA:-0.126969581437;DMAP1_NCOR{1,2}_SMARC:-0.12827732772;POU1F1:-0.129361622968;TFDP1:-0.144469078192;BREu{core}:-0.14786806892;MED-1{core}:-0.148179254009;SPIB:-0.1699538019;POU5F1:-0.186226895394;RFX2..5_RFXANK_RFXAP:-0.197026829803;SOX17:-0.199845707546;RUNX1..3:-0.216425110321;TFAP2B:-0.221146070275;HIF1A:-0.234004285968;SPI1:-0.237904843657;PPARG:-0.249377679938;STAT2,4,6:-0.251815527008;NR3C1:-0.268382217165;ETS1,2:-0.295906539105;ZIC1..3:-0.298988640336;NFIX:-0.300955798752;RBPJ:-0.301847160227;ELK1,4_GABP{A,B1}:-0.304074191641;HOX{A5,B5}:-0.313746660864;RREB1:-0.324361117438;IRF1,2:-0.334746368554;RXRA_VDR{dimer}:-0.34120536818;MYB:-0.344267078259;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.347125783211;REST:-0.350433138761;ZBTB6:-0.36339673073;MZF1:-0.401929366912;PAX4:-0.405372770664;NFY{A,B,C}:-0.405573391657;LMO2:-0.417745319409;PAX1,9:-0.427914097616;ZNF143:-0.436647797716;PRDM1:-0.437064746568;ZFP161:-0.44199352675;ELF1,2,4:-0.460592229698;ZNF423:-0.499568328753;HBP1_HMGB_SSRP1_UBTF:-0.501173507147;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.503295382943;HNF4A_NR2F1,2:-0.508767982864;NR6A1:-0.519280321892;ATF5_CREB3:-0.524928007576;IRF7:-0.542099305324;FOXA2:-0.556904497729;NANOG{mouse}:-0.617298186137;CDX1,2,4:-0.62369171462;ADNP_IRX_SIX_ZHX:-0.649292648754;NFIL3:-0.649939350273;PAX6:-0.650589153175;AHR_ARNT_ARNT2:-0.665205454989;ZBTB16:-0.667907197651;HNF1A:-0.669778662747;GATA6:-0.680983289833;ONECUT1,2:-0.696693048936;NRF1:-0.703173774299;CREB1:-0.704027796425;UFEwm:-0.711847013621;RFX1:-0.737307584115;ARID5B:-0.800814518508;OCT4_SOX2{dimer}:-0.871480688143;ESRRA:-0.951067189693;JUN:-0.961600029681;NR5A1,2:-0.974683675391;EVI1:-0.990182424262;RXR{A,B,G}:-1.03981178366;CUX2:-1.04102253818;FOXD3:-1.33573063919;YY1:-1.35397547495;AR:-1.40293271218;PBX1:-1.79772649273;NR1H4:-1.94198412722 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:693-20I5;search_select_hide=table117:693-20I5 | |||
}} | }} |
Latest revision as of 19:19, 4 June 2020
Name: | skin, neonate N06 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11097 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11097
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.0922 |
1001 | 0 |
1002 | 0.049 |
1003 | 0.148 |
1004 | 0 |
1005 | 0 |
1006 | -0.033 |
1007 | 0.0725 |
1008 | 0 |
1009 | 0.219 |
101 | 0.0515 |
1010 | 0 |
1011 | -0.0324 |
1012 | 0 |
1013 | -0.0663 |
1014 | 0.00563 |
1015 | -0.0612 |
1016 | -0.0346 |
1017 | 0 |
1018 | 0.626 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.0728 |
1023 | 0 |
1024 | 0.133 |
1025 | -0.0122 |
1026 | 0 |
1027 | 0 |
1028 | 0 |
1029 | 0.0586 |
103 | 0.507 |
1030 | 0 |
1031 | 0.128 |
1032 | -0.0533 |
1033 | -0.0262 |
1034 | 0.049 |
1035 | 0 |
1036 | -0.00147 |
1037 | 0 |
1038 | -0.00712 |
1039 | -0.131 |
104 | 0 |
1040 | 0.126 |
1041 | 0.498 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11097
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11097
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.846 |
10 | 10 | 0.964 |
100 | 100 | 0.681 |
101 | 101 | 0.653 |
102 | 102 | 0.286 |
103 | 103 | 0.443 |
104 | 104 | 0.0494 |
105 | 105 | 0.539 |
106 | 106 | 0.0181 |
107 | 107 | 0.0222 |
108 | 108 | 0.511 |
109 | 109 | 0.97 |
11 | 11 | 0.97 |
110 | 110 | 0.919 |
111 | 111 | 0.485 |
112 | 112 | 0.659 |
113 | 113 | 0.916 |
114 | 114 | 0.641 |
115 | 115 | 0.268 |
116 | 116 | 0.719 |
117 | 117 | 0.55 |
118 | 118 | 0.102 |
119 | 119 | 0.835 |
12 | 12 | 0.792 |
120 | 120 | 0.924 |
121 | 121 | 0.733 |
122 | 122 | 0.864 |
123 | 123 | 0.991 |
124 | 124 | 0.357 |
125 | 125 | 0.872 |
126 | 126 | 0.688 |
127 | 127 | 0.969 |
128 | 128 | 0.0716 |
129 | 129 | 0.89 |
13 | 13 | 0.0285 |
130 | 130 | 0.578 |
131 | 131 | 0.21 |
132 | 132 | 0.963 |
133 | 133 | 0.432 |
134 | 134 | 0.673 |
135 | 135 | 0.108 |
136 | 136 | 0.137 |
137 | 137 | 0.473 |
138 | 138 | 0.156 |
139 | 139 | 0.322 |
14 | 14 | 0.43 |
140 | 140 | 0.125 |
141 | 141 | 0.846 |
142 | 142 | 0.452 |
143 | 143 | 0.574 |
144 | 144 | 0.615 |
145 | 145 | 0.205 |
146 | 146 | 0.649 |
147 | 147 | 0.133 |
148 | 148 | 0.243 |
149 | 149 | 0.476 |
15 | 15 | 0.101 |
150 | 150 | 0.237 |
151 | 151 | 0.711 |
152 | 152 | 0.0114 |
153 | 153 | 0.733 |
154 | 154 | 0.478 |
155 | 155 | 0.968 |
156 | 156 | 3.76453e-4 |
157 | 157 | 0.0391 |
158 | 158 | 0.223 |
159 | 159 | 0.0327 |
160 | 160 | 0.236 |
161 | 161 | 0.356 |
162 | 162 | 0.846 |
163 | 163 | 0.737 |
164 | 164 | 0.574 |
165 | 165 | 0.347 |
166 | 166 | 0.369 |
167 | 167 | 0.0159 |
168 | 168 | 0.533 |
169 | 169 | 0.0549 |
17 | 17 | 0.0404 |
18 | 18 | 0.306 |
19 | 19 | 0.333 |
2 | 2 | 0.0419 |
20 | 20 | 0.117 |
21 | 21 | 0.412 |
22 | 22 | 0.463 |
23 | 23 | 0.0627 |
24 | 24 | 0.723 |
25 | 25 | 0.253 |
26 | 26 | 0.00238 |
27 | 27 | 0.842 |
28 | 28 | 0.948 |
29 | 29 | 0.353 |
3 | 3 | 0.793 |
30 | 30 | 0.0273 |
31 | 31 | 0.279 |
32 | 32 | 0.701 |
33 | 33 | 0.896 |
34 | 34 | 0.769 |
35 | 35 | 0.0186 |
36 | 36 | 0.0437 |
37 | 37 | 0.576 |
38 | 38 | 0.997 |
39 | 39 | 0.0347 |
4 | 4 | 0.916 |
40 | 40 | 0.596 |
41 | 41 | 0.71 |
42 | 42 | 0.653 |
43 | 43 | 0.935 |
44 | 44 | 0.444 |
45 | 45 | 0.357 |
46 | 46 | 0.521 |
47 | 47 | 0.858 |
48 | 48 | 0.95 |
49 | 49 | 0.409 |
5 | 5 | 0.341 |
50 | 50 | 0.603 |
51 | 51 | 0.861 |
52 | 52 | 0.0661 |
53 | 53 | 0.214 |
54 | 54 | 0.536 |
55 | 55 | 0.279 |
56 | 56 | 0.889 |
57 | 57 | 0.47 |
58 | 58 | 0.888 |
59 | 59 | 0.378 |
6 | 6 | 0.478 |
60 | 60 | 0.0602 |
61 | 61 | 0.513 |
62 | 62 | 0.776 |
63 | 63 | 0.591 |
64 | 64 | 0.501 |
65 | 65 | 0.782 |
66 | 66 | 0.671 |
67 | 67 | 0.6 |
68 | 68 | 0.045 |
69 | 69 | 0.0618 |
7 | 7 | 0.507 |
70 | 70 | 0.435 |
71 | 71 | 0.513 |
72 | 72 | 0.775 |
73 | 73 | 0.101 |
74 | 74 | 0.823 |
75 | 75 | 0.509 |
76 | 76 | 0.00315 |
77 | 77 | 0.0594 |
78 | 78 | 0.0152 |
79 | 79 | 0.826 |
8 | 8 | 0.46 |
80 | 80 | 0.17 |
81 | 81 | 0.432 |
82 | 82 | 0.837 |
83 | 83 | 0.379 |
84 | 84 | 0.674 |
85 | 85 | 0.0797 |
86 | 86 | 0.127 |
87 | 87 | 0.0333 |
88 | 88 | 0.735 |
89 | 89 | 0.368 |
9 | 9 | 0.403 |
90 | 90 | 0.857 |
91 | 91 | 0.799 |
92 | 92 | 0.781 |
93 | 93 | 0.548 |
94 | 94 | 0.369 |
95 | 95 | 0.351 |
96 | 96 | 0.819 |
97 | 97 | 0.0655 |
98 | 98 | 0.881 |
99 | 99 | 0.107 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11097
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000014 (zone of skin)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0007029 (surface)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000312 (mouse neonate N6 sample)
0011406 (mouse skin- neonate N06 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)