FF:762-6C4: Difference between revisions

Latest revision as of 19:20, 4 June 2020

Name:	skin, neonate N10
Species:	Mouse (Mus musculus)
Library ID:	CNhs11108
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	skin
dev stage	10 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004754

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11108		CAGE		DRX009081		DRR009955

Accession ID Mm9

Library id		BAM		CTSS
CNhs11108		DRZ001380		DRZ002763

Accession ID Mm10

Library id		BAM		CTSS
CNhs11108		DRZ012730		DRZ014113

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11108

0	0
1	0
10	0
100	0
1000	0.0262
1001	-0.00258
1002	0.0544
1003	0.0635
1004	0
1005	-0.0389
1006	0
1007	0.11
1008	0
1009	0.108
101	0.0963
1010	0
1011	0.0383
1012	0
1013	0.0402
1014	0
1015	-0.0319
1016	-0.0547
1017	0
1018	0.818
1019	0
102	0
1020	0
1021	0
1022	0.066
1023	0
1024	0.189
1025	0
1026	0
1027	0
1028	0
1029	0.121
103	0.458
1030	0
1031	-0.0483
1032	-0.0097
1033	-0.00922
1034	0
1035	0
1036	-0.145
1037	0
1038	-0.0116
1039	-0.0661
104	0
1040	0.0446
1041	0.422

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11108

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.718
MA0003.1	MA0003.1	0.445
MA0004.1	MA0004.1	0.988
MA0006.1	MA0006.1	0.0417
MA0007.1	MA0007.1	0.503
MA0009.1	MA0009.1	0.0296
MA0014.1	MA0014.1	0.224
MA0017.1	MA0017.1	2.59372e-5
MA0018.2	MA0018.2	0.127
MA0019.1	MA0019.1	0.437
MA0024.1	MA0024.1	0.216
MA0025.1	MA0025.1	0.767
MA0027.1	MA0027.1	0.506
MA0028.1	MA0028.1	0.00141
MA0029.1	MA0029.1	0.288
MA0030.1	MA0030.1	0.155
MA0031.1	MA0031.1	0.304
MA0035.2	MA0035.2	0.00927
MA0038.1	MA0038.1	0.342
MA0039.2	MA0039.2	0.00108
MA0040.1	MA0040.1	0.0058
MA0041.1	MA0041.1	0.261
MA0042.1	MA0042.1	0.748
MA0043.1	MA0043.1	0.595
MA0046.1	MA0046.1	1.49317e-11
MA0047.2	MA0047.2	0.436
MA0048.1	MA0048.1	0.0425
MA0050.1	MA0050.1	2.77308e-4
MA0051.1	MA0051.1	0.0386
MA0052.1	MA0052.1	0.00414
MA0055.1	MA0055.1	8.19366e-5
MA0057.1	MA0057.1	0.122
MA0058.1	MA0058.1	0.694
MA0059.1	MA0059.1	0.332
MA0060.1	MA0060.1	0.873
MA0061.1	MA0061.1	0.0908
MA0062.2	MA0062.2	2.64447e-5
MA0065.2	MA0065.2	0.13
MA0066.1	MA0066.1	0.438
MA0067.1	MA0067.1	0.97
MA0068.1	MA0068.1	0.484
MA0069.1	MA0069.1	0.872
MA0070.1	MA0070.1	0.986
MA0071.1	MA0071.1	0.0879
MA0072.1	MA0072.1	0.607
MA0073.1	MA0073.1	0.339
MA0074.1	MA0074.1	0.28
MA0076.1	MA0076.1	0.00208
MA0077.1	MA0077.1	0.49
MA0078.1	MA0078.1	0.131
MA0079.2	MA0079.2	0.0271
MA0080.2	MA0080.2	2.57479e-4
MA0081.1	MA0081.1	0.00687
MA0083.1	MA0083.1	0.216
MA0084.1	MA0084.1	0.486
MA0087.1	MA0087.1	0.76
MA0088.1	MA0088.1	0.389
MA0090.1	MA0090.1	0.00843
MA0091.1	MA0091.1	0.623
MA0092.1	MA0092.1	0.302
MA0093.1	MA0093.1	0.903
MA0099.2	MA0099.2	6.4689e-19
MA0100.1	MA0100.1	0.105
MA0101.1	MA0101.1	0.253
MA0102.2	MA0102.2	0.36
MA0103.1	MA0103.1	3.03949e-4
MA0104.2	MA0104.2	0.111
MA0105.1	MA0105.1	0.0496
MA0106.1	MA0106.1	0.0123
MA0107.1	MA0107.1	0.284
MA0108.2	MA0108.2	3.84437e-65
MA0111.1	MA0111.1	0.932
MA0112.2	MA0112.2	0.99
MA0113.1	MA0113.1	0.0111
MA0114.1	MA0114.1	1.1671e-4
MA0115.1	MA0115.1	0.00117
MA0116.1	MA0116.1	0.243
MA0117.1	MA0117.1	0.801
MA0119.1	MA0119.1	0.828
MA0122.1	MA0122.1	0.533
MA0124.1	MA0124.1	0.655
MA0125.1	MA0125.1	3.40407e-5
MA0131.1	MA0131.1	0.311
MA0135.1	MA0135.1	0.0347
MA0136.1	MA0136.1	2.4286e-5
MA0137.2	MA0137.2	0.208
MA0138.2	MA0138.2	0.941
MA0139.1	MA0139.1	0.32
MA0140.1	MA0140.1	0.0176
MA0141.1	MA0141.1	3.80858e-4
MA0142.1	MA0142.1	0.88
MA0143.1	MA0143.1	0.238
MA0144.1	MA0144.1	0.808
MA0145.1	MA0145.1	0.0926
MA0146.1	MA0146.1	0.226
MA0147.1	MA0147.1	0.067
MA0148.1	MA0148.1	0.357
MA0149.1	MA0149.1	0.41
MA0150.1	MA0150.1	0.635
MA0152.1	MA0152.1	0.479
MA0153.1	MA0153.1	2.73757e-8
MA0154.1	MA0154.1	0.814
MA0155.1	MA0155.1	0.543
MA0156.1	MA0156.1	1.06888e-4
MA0157.1	MA0157.1	0.0555
MA0159.1	MA0159.1	0.15
MA0160.1	MA0160.1	0.0141
MA0162.1	MA0162.1	0.383
MA0163.1	MA0163.1	0.245
MA0164.1	MA0164.1	0.219
MA0258.1	MA0258.1	0.272
MA0259.1	MA0259.1	0.327

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11108

Novel motif	Logo	P-value
1	1	0.873
10	10	0.874
100	100	0.891
101	101	0.465
102	102	0.154
103	103	0.562
104	104	0.0674
105	105	0.754
106	106	0.0274
107	107	0.0152
108	108	0.355
109	109	0.535
11	11	0.783
110	110	0.732
111	111	0.748
112	112	0.746
113	113	0.759
114	114	0.585
115	115	0.206
116	116	0.773
117	117	0.647
118	118	0.111
119	119	0.624
12	12	0.921
120	120	0.837
121	121	0.956
122	122	0.966
123	123	0.949
124	124	0.399
125	125	0.557
126	126	0.559
127	127	0.498
128	128	0.159
129	129	0.717
13	13	0.107
130	130	0.877
131	131	0.229
132	132	0.868
133	133	0.559
134	134	0.764
135	135	0.0834
136	136	0.15
137	137	0.34
138	138	0.2
139	139	0.394
14	14	0.469
140	140	0.307
141	141	0.569
142	142	0.895
143	143	0.346
144	144	0.424
145	145	0.469
146	146	0.443
147	147	0.0604
148	148	0.153
149	149	0.591
15	15	0.174
150	150	0.12
151	151	0.908
152	152	0.00824
153	153	0.735
154	154	0.722
155	155	0.944
156	156	0.133
157	157	0.12
158	158	0.575
159	159	0.249
160	160	0.507
161	161	0.375
162	162	0.857
163	163	0.942
164	164	0.513
165	165	0.216
166	166	0.483
167	167	0.0194
168	168	0.601
169	169	0.104
17	17	0.0597
18	18	0.338
19	19	0.655
2	2	0.0322
20	20	0.0942
21	21	0.346
22	22	0.613
23	23	0.0787
24	24	0.748
25	25	0.267
26	26	0.00809
27	27	0.824
28	28	0.868
29	29	0.297
3	3	0.717
30	30	0.0338
31	31	0.301
32	32	0.641
33	33	0.808
34	34	0.958
35	35	0.0233
36	36	0.0248
37	37	0.679
38	38	0.921
39	39	0.168
4	4	0.728
40	40	0.564
41	41	0.794
42	42	0.619
43	43	0.741
44	44	0.497
45	45	0.381
46	46	0.505
47	47	0.841
48	48	0.975
49	49	0.389
5	5	0.416
50	50	0.815
51	51	0.871
52	52	0.0806
53	53	0.228
54	54	0.527
55	55	0.401
56	56	0.743
57	57	0.642
58	58	0.982
59	59	0.717
6	6	0.798
60	60	0.0737
61	61	0.502
62	62	0.826
63	63	0.68
64	64	0.359
65	65	0.946
66	66	0.821
67	67	0.487
68	68	0.146
69	69	0.236
7	7	0.747
70	70	0.184
71	71	0.552
72	72	0.733
73	73	0.145
74	74	0.925
75	75	0.395
76	76	0.0063
77	77	0.0606
78	78	0.0108
79	79	0.421
8	8	0.541
80	80	0.344
81	81	0.257
82	82	0.653
83	83	0.273
84	84	0.393
85	85	0.0902
86	86	0.18
87	87	0.0672
88	88	0.715
89	89	0.37
9	9	0.477
90	90	0.99
91	91	0.758
92	92	0.982
93	93	0.746
94	94	0.556
95	95	0.744
96	96	0.984
97	97	0.0576
98	98	0.804
99	99	0.166

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11108

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011421 mouse skin- neonate N10 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000014 (zone of skin)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0007029 (surface)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000305 (mouse neonate N10 sample)
0011421 (mouse skin- neonate N10 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008944
+|DRA_sample_Accession=CAGE@SAMD00004754
-|accession_numbers=CAGE;DRX009081;DRR009955;DRZ001380;DRZ002763
+|accession_numbers=CAGE;DRX009081;DRR009955;DRZ001380;DRZ002763;DRZ012730;DRZ014113
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0007029,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:94981424..94981439,+!p1@Dlx3!2.51!364.23!Dlx3;;chr15:102751603..102751630,+!p1@Hoxc13!2.28!191.72!Hoxc13;;chr13:53568104..53568156,-!p1@Msx2!2.23!242.60!Msx2;;chr11:121380640..121380655,-!p1@Zfp750!2.19!247.20!Zfp750;;chr16:25801993..25802014,+!p1@Trp63!2.13!132.46!Trp63;;chr2:9800207..9800234,-!p1@Gata3!1.99!280.52!Gata3;;chr11:121380594..121380609,-!p2@Zfp750!1.97!154.78!Zfp750;;chr9:31720843..31720888,-!p1@Barx2!1.89!85.35!Barx2;;chr19:5560600..5560617,-!p1@Ovol1!1.85!84.20!Ovol1;;chr11:121380611..121380625,-!p3@Zfp750!1.80!74.19!Zfp750;;chr5:77543897..77543911,-!p2@Hopx!1.79!112.11!Hopx;;chr4:46356509..46356527,+!p1@Foxe1!1.75!54.66!Foxe1;;chr19:5560570..5560582,-!p2@Ovol1!1.73!53.18!Ovol1;;chr11:96880072..96880079,+!p1@Sp6!1.73!52.69!Sp6;;chr13:72766250..72766273,+!p1@Irx2!1.70!74.36!Irx2;;chr14:118636214..118636235,-!p1@Sox21!1.67!55.15!Sox21;;chr11:78200071..78200100,-!p1@Foxn1!1.64!42.35!Foxn1;;chr13:40829137..40829205,-!p1@Tfap2a!1.59!42.18!Tfap2a;;chr12:25257141..25257173,+!p1@Grhl1!1.57!71.89!Grhl1;;chr12:25257265..25257294,+!p2@Grhl1!1.53!32.66!Grhl1;;chr10:44178521..44178557,-!p1@Prdm1!1.52!55.81!Prdm1;;chr13:53568191..53568219,-!p2@Msx2!1.52!32.01!Msx2;;chr4:135129538..135129558,-!p1@Grhl3!1.51!46.45!Grhl3;;chr15:97738692..97738747,-!p1@Vdr!1.49!155.93!Vdr;;chr2:172375081..172375105,+!p1@Tfap2c!1.49!29.71!Tfap2c;;chr2:71384802..71384815,-!p1@Dlx2!1.44!32.99!Dlx2;;chr10:67000609..67000625,+!p1@Egr2!1.42!57.94!Egr2;;chr15:102751578..102751600,+!p2@Hoxc13!1.42!25.44!Hoxc13;;chr2:38206580..38206600,+!p2@Lhx2!1.41!30.53!Lhx2;;chr17:14011569..14011589,+!p8@Mllt4!1.40!24.13!Mllt4;;chr13:40826961..40827001,-!p4@Tfap2a!1.40!24.13!Tfap2a;;chr13:31650185..31650201,+!p1@Foxq1!1.39!80.26!Foxq1;;chr12:25257176..25257190,+!p3@Grhl1!1.39!26.43!Grhl1;;chr13:72766279..72766296,+!p2@Irx2!1.38!34.14!Irx2;;chr5:77543935..77543947,-!p4@Hopx!1.36!21.67!Hopx;;chr17:14011485..14011507,+!p2@Mllt4!1.35!21.34!Mllt4;;chr9:43013917..43013968,-!p1@Pou2f3!1.35!21.17!Pou2f3;;chr7:19946556..19946611,+!p1@Ppp1r13l!1.34!80.43!Ppp1r13l;;chr6:51382677..51382783,+!p1@Nfe2l3!1.32!50.39!Nfe2l3;;chr13:53568081..53568094,-!p3@Msx2!1.32!19.86!Msx2;;chr17:14011545..14011564,+!p6@Mllt4!1.30!19.04!Mllt4;;chr17:14011529..14011544,+!p7@Mllt4!1.30!18.88!Mllt4;;chr4:148178559..148178603,+!p1@Casz1!1.25!47.27!Casz1;;chr2:103143336..103143367,-!p1@Ehf!1.25!27.25!Ehf;;chr3:130813200..130813252,+!p1@Lef1!1.23!70.25!Lef1;;chr11:76485958..76485963,+!p1@Bhlha9!1.23!15.92!Bhlha9;;chr12:25257114..25257131,+!p4@Grhl1!1.22!20.03!Grhl1;;chr16:18587076..18587106,-!p1@Tbx1!1.21!21.83!Tbx1;;chr1:19199236..19199258,+!p1@Tfap2b!1.21!15.10!Tfap2b;;chr10:44178375..44178390,-!p2@Prdm1!1.20!20.03!Prdm1;;chr2:103251839..103251853,+!p5@Elf5!1.20!14.77!Elf5;;chr13:40825465..40825469,-!p2@Tfap2a!1.18!14.12!Tfap2a;;chr9:31721051..31721068,-!p3@Barx2!1.15!12.97!Barx2;;chr13:53568169..53568179,-!p4@Msx2!1.14!12.80!Msx2;;chr15:102087880..102087927,-!p2@Rarg!1.11!27.74!Rarg;;chr1:19199021..19199048,+!p8@Tfap2b!1.11!11.82!Tfap2b;;chr1:194979361..194979373,+!p2@Irf6!1.08!14.94!Irf6;;chr14:70477113..70477173,+!p1@Egr3!1.08!11.16!Egr3;;chr4:55545337..55545357,-!p1@Klf4!1.07!158.56!Klf4;;chr10:44178474..44178487,-!p4@Prdm1!1.07!15.59!Prdm1;;chr5:38215819..38215823,-!p1@Msx1!1.06!27.74!Msx1;;chr10:44178493..44178520,-!p3@Prdm1!1.06!14.77!Prdm1;;chr1:194979315..194979359,+!p1@Irf6!1.05!63.03!Irf6;;chr15:102828658..102828678,+!p1@Hoxc6!1.04!9.85!Hoxc6;;chr6:86619104..86619119,-!p1@Mxd1!1.03!81.09!Mxd1;;chr7:89137163..89137200,-!p1@Bnc1!1.03!11.65!Bnc1;;chr2:38206744..38206766,+!p1@Lhx2!1.02!11.49!Lhx2;;chr15:103170533..103170556,-!p1@Zfp385a!1.01!35.13!Zfp385a;;chr12:34642510..34642530,+!p1@Twist1!1.01!30.04!Twist1;;chr13:31898496..31898519,+!p3@Foxc1!1.01!15.27!Foxc1;;chr7:20162663..20162678,+!p1@Zfp296!1.01!12.15!Zfp296;;chr13:73397958..73397994,+!p1@Irx4!1.01!9.19!Irx4;;chr3:130813736..130813752,+!p3@Lef1!1.00!12.64!Lef1;;chr3:99057269..99057306,+!p1@Tbx15!1.00!11.00!Tbx15;;chr1:19202352..19202354,+!p2@Tfap2b!1.00!9.03!Tfap2b;;chr14:99697871..99697934,+!p1@Klf5!0.99!178.75!Klf5;;chr12:25257298..25257323,+!p5@Grhl1!0.99!8.86!Grhl1;;chr6:53523358..53523388,+!p1@Creb5!0.98!104.56!Creb5;;chr13:31898729..31898761,+!p1@Foxc1!0.98!21.67!Foxc1;;chr4:124334894..124334899,+!p1@Pou3f1!0.98!11.33!Pou3f1;;chr13:40829337..40829360,-!p5@Tfap2a!0.98!8.54!Tfap2a;;chr15:103170516..103170531,-!p2@Zfp385a!0.97!20.35!Zfp385a;;chr4:148178529..148178548,+!p3@Casz1!0.96!19.70!Casz1;;chr11:94981134..94981147,+!p2@Dlx3!0.95!7.88!Dlx3;;chr4:148275237..148275311,+!p2@Casz1!0.94!32.50!Casz1;;chr6:52176164..52176195,-!p1@Hoxa9!0.94!9.68!Hoxa9;;chr10:66998241..66998263,+!p2@Egr2!0.94!7.71!Egr2;;chr5:32438831..32438878,+!p1@Fosl2!0.93!80.59!Fosl2;;chr13:72101178..72101203,-!p1@Irx1!0.93!11.98!Irx1;;chr4:122673187..122673201,+!p2@Mycl1!0.92!13.46!Mycl1;;chr2:103143315..103143328,-!p2@Ehf!0.92!7.39!Ehf;;chr8:124984566..124984595,-!p1@Snai3!0.91!11.33!Snai3;;chr11:78200195..78200211,-!p2@Foxn1!0.91!7.06!Foxn1;;chr1:19199221..19199234,+!p6@Tfap2b!0.91!7.06!Tfap2b;;chr9:69137716..69137744,+!p1@Rora!0.90!45.63!Rora;;chr14:118636238..118636257,-!p2@Sox21!0.90!6.89!Sox21;;chr11:106128936..106128955,-!p4@Smarcd2!0.89!7.88!Smarcd2;;chr2:9800094..9800108,-!p3@Gata3!0.88!6.57!Gata3;;chr15:102751568..102751573,+!p4@Hoxc13!0.87!6.40!Hoxc13;;chr12:109242266..109242295,-!p1@Bcl11b!0.86!55.81!Bcl11b;;chr4:135129447..135129467,-!p2@Grhl3!0.86!7.71!Grhl3;;chr13:31898637..31898653,+!p2@Foxc1!0.85!11.16!Foxc1;;chr4:84321300..84321315,-!p2@Bnc2!0.85!7.55!Bnc2;;chr15:102751552..102751563,+!p3@Hoxc13!0.85!6.07!Hoxc13;;chr13:40824310..40824314,-!p6@Tfap2a!0.84!5.91!Tfap2a;;chr9:31720903..31720918,-!p2@Barx2!0.84!5.91!Barx2;;chr2:133377954..133377973,+!p1@Bmp2!0.83!19.37!Bmp2;;chr5:137042338..137042372,-!p5@Cux1!0.83!5.74!Cux1;;chr2:160192793..160192809,-!p1@Mafb!0.82!91.10!Mafb;;chr18:80909801..80909819,-!p1@Nfatc1!0.82!35.62!Nfatc1;;chr8:94881733..94881790,+!p1@Irx5!0.81!11.16!Irx5;;chr10:44178575..44178590,-!p5@Prdm1!0.81!6.89!Prdm1;;chr6:97941770..97941784,+!p4@Mitf!0.81!5.42!Mitf;;chr10:126778916..126778974,-!p1@Gli1!0.80!12.47!Gli1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.80!9.68!Zbtb7c;;chr13:72766234..72766243,+!p3@Irx2!0.80!5.25!Irx2;;chr13:40826150..40826167,-!p3@Tfap2a!0.79!5.74!Tfap2a;;chr16:92697560..92697592,-!p2@Runx1!0.78!34.31!Runx1;;chr12:37835141..37835194,+!p1@Meox2!0.78!16.91!Meox2;;chr2:71384458..71384526,-!p2@Dlx2!0.77!4.92!Dlx2;;chr3:99044284..99044308,+!p4@Tbx15!0.76!4.76!Tbx15;;chr2:103252231..103252256,+!p4@Elf5!0.76!4.76!Elf5;;chr7:89137554..89137565,-!p2@Bnc1!0.76!4.76!Bnc1;;chr11:112643496..112643562,+!p1@Sox9!0.75!191.55!Sox9;;chr2:103251917..103251927,+!p9@Elf5!0.75!4.60!Elf5;;chr8:87502608..87502623,-!p1@Junb!0.74!81.74!Junb;;chr15:35225845..35225867,+!p1@Osr2!0.74!12.31!Osr2;;chr13:72101161..72101177,-!p2@Irx1!0.73!6.24!Irx1;;chr5:32438894..32438908,+!p2@Fosl2!0.72!9.68!Fosl2;;chr6:51382822..51382833,+!p2@Nfe2l3!0.72!4.27!Nfe2l3;;chr4:148178459..148178482,+!p4@Casz1!0.72!4.27!Casz1;;chr7:6649134..6649167,-!p1@Zim1!0.71!24.79!Zim1;;chr9:31720817..31720829,-!p5@Barx2!0.71!4.10!Barx2;;chr9:31720746..31720762,-!p4@Barx2!0.71!4.10!Barx2;;chr6:52167434..52167450,-!p3@Hoxa7!0.71!4.10!Hoxa7;;chr15:37163124..37163153,+!p3@Grhl2!0.71!4.10!Grhl2;;chr2:27532479..27532509,+!p3@Rxra!0.70!8.86!Rxra;;chr2:74542918..74542971,+!p1@Hoxd8!0.70!6.40!Hoxd8;;chr8:118231723..118231740,-!p1@Maf!0.69!99.63!Maf;;chr11:96145450..96145517,+!p2@Hoxb7!0.69!6.24!Hoxb7;;chr8:90328310..90328362,-!p3@Zfp423!0.69!4.60!Zfp423;;chr3:99057677..99057730,+!p2@Tbx15!0.69!3.94!Tbx15;;chr15:37163065..37163092,+!p4@Grhl2!0.69!3.94!Grhl2;;chr10:66998213..66998240,+!p4@Egr2!0.69!3.94!Egr2;;chr18:35020854..35020869,+!p1@Egr1!0.68!169.07!Egr1;;chr4:124805061..124805087,-!p1@Zc3h12a!0.68!13.13!Zc3h12a;;chr16:25802129..25802142,+!p3@Trp63!0.68!3.78!Trp63;;chr17:14011908..14011919,+!p13@Mllt4!0.68!3.78!Mllt4;;chr2:103264245..103264268,+!p2@Elf5!0.68!3.78!Elf5;;chr1:194979383..194979393,+!p3@Irf6!0.68!3.78!Irf6;;chr6:131338435..131338482,-!p1@Csda!0.67!408.05!Csda;;chr4:84320893..84320910,-!p1@Bnc2!0.67!9.03!Bnc2;;chr15:37162796..37162828,+!p1@Grhl2!0.66!6.40!Grhl2;;chr11:96153767..96153822,+!p1@Hoxb6!0.66!5.91!Hoxb6;;chr11:96147952..96147967,+!p1@Hoxb7!0.66!4.60!Hoxb7;;chr6:6832076..6832092,-!p1@Dlx5!0.66!4.27!Dlx5;;chr13:48356475..48356492,+!p1@Id4!0.65!87.49!Id4;;chr8:118231678..118231692,-!p2@Maf!0.65!36.60!Maf;;chr17:32506357..32506377,-!p3@Wiz!0.65!8.04!Wiz;;chr11:101646127..101646147,-!p5@Etv4!0.65!4.10!Etv4;;chr1:19199095..19199114,+!p5@Tfap2b!0.65!3.45!Tfap2b;;chr3:130813756..130813767,+!p8@Lef1!0.65!3.45!Lef1;;chr12:12948633..12948651,-!p1@Mycn!0.64!37.92!Mycn;;chr6:128250380..128250442,-!p2@Tead4!0.64!4.43!Tead4;;chr10:107769168..107769215,+!p1@Pawr!0.63!38.90!Pawr;;chr11:52096804..52096896,-!p1@Tcf7!0.63!30.86!Tcf7;;chr14:64562503..64562524,+!p1@Sox7!0.63!22.65!Sox7;;chr17:13897299..13897342,+!p3@Mllt4!0.63!8.54!Mllt4;;chr6:52167459..52167492,-!p1@Hoxa7!0.63!4.10!Hoxa7;;chr13:83643159..83643226,+!p3@Mef2c!0.63!3.28!Mef2c;;chr2:71367871..71367898,+!p1@Dlx1!0.63!3.28!Dlx1;;chr4:84321280..84321298,-!p5@Bnc2!0.63!3.28!Bnc2;;chr17:14011923..14011933,+!p14@Mllt4!0.63!3.28!Mllt4;;chr1:19199119..19199134,+!p4@Tfap2b!0.63!3.28!Tfap2b;;chr4:82151653..82151706,-!p2@Nfib!0.62!107.02!Nfib;;chr4:122911086..122911112,+!p1@Heyl!0.62!43.83!Heyl;;chr4:150482563..150482655,-!p2@Camta1!0.62!13.13!Camta1;;chr10:79390075..79390115,+!p2@Arid3a!0.62!12.31!Arid3a;;chr12:85534778..85534812,-!p3@C130039O16Rik!0.62!10.67!C130039O16Rik;;chr1:120950098..120950132,-!p2@Gli2!0.62!8.21!Gli2;;chr12:37835120..37835133,+!p2@Meox2!0.61!4.76!Meox2;;chr13:73398004..73398017,+!p2@Irx4!0.61!3.12!Irx4;;chr1:19199079..19199092,+!p7@Tfap2b!0.61!3.12!Tfap2b;;chr16:18587052..18587063,-!p3@Tbx1!0.61!3.12!Tbx1;;chr4:84192360..84192376,-!p8@Bnc2!0.61!3.12!Bnc2;;chr4:126413480..126413489,-!p1@Tfap2e!0.61!3.12!Tfap2e;;chr5:65194752..65194769,+!p1@Klf3!0.60!12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0.66!Nfkb1;;chr3:89191054..89191070,-!p5@Zbtb7b!0.22!0.66!Zbtb7b;;chr2:74550015..74550057,+!p2@Hoxd3!0.22!0.66!Hoxd3;;chr2:71384401..71384424,-!p3@Dlx2!0.22!0.66!Dlx2;;chr3:99044251..99044260,+!p8@Tbx15!0.22!0.66!Tbx15;;chr3:130813268..130813275,+!p12@Lef1!0.22!0.66!Lef1;;chr2:74536050..74536065,+!p2@Hoxd9!0.22!0.66!Hoxd9;;chr3:128902837..128902861,+!p3@Pitx2!0.22!0.66!Pitx2;;chr5:125343044..125343141,+!p1@Zfp664!0.21!62.54!Zfp664;;chr7:35841486..35841575,-!p1@Cebpg!0.21!37.26!Cebpg;;chr2:18314363..18314465,-!p1@Dnajc1!0.21!35.29!Dnajc1;;chr5:77524250..77524300,-!p1@Hopx!0.21!29.22!Hopx;;chr7:117205217..117205246,+!p1@Zfp143!0.21!28.23!Zfp143;;chr13:44826937..44826952,+!p2@Jarid2!0.21!20.03!Jarid2;;chr8:72498160..72498214,-!p1@Gatad2a!0.21!18.38!Gatad2a;;chrX:98449492..98449510,+!p1@Foxo4!0.21!14.77!Foxo4;;chr6:99470943..99471024,-!p3@Foxp1!0.21!13.13!Foxp1;;chr12:100631220..100631300,-!p2@Foxn3!0.21!12.31!Foxn3;;chr15:100382390..100382441,-!p1@Tfcp2!0.21!9.19!Tfcp2;;chr17:84105510..84105540,+!p2@Mta3!0.21!7.06!Mta3;;chr5:138186979..138187025,+!p4@Tsc22d4!0.21!4.60!Tsc22d4;;chr1:170362437..170362478,-!p5@Pbx1!0.21!3.78!Pbx1;;chr11:53164533..53164548,+!p4@Aff4!0.21!3.45!Aff4;;chr10:127080141..127080160,+!p2@Stat6!0.21!3.12!Stat6;;chr5:34530277..34530292,-!p3@Mxd4!0.21!2.95!Mxd4;;chr18:69681439..69681456,+!p7@Tcf4!0.21!2.95!Tcf4;;chr18:55150248..55150308,-!p6@Zfp608!0.21!2.79!Zfp608;;chr17:15701263..15701277,-!p2@Prdm9!0.21!2.79!Prdm9;;chr6:72739234..72739256,-!p2@Tcf7l1!0.21!2.63!Tcf7l1;;chr4:62626682..62626705,+!p2@Zfp618!0.21!2.46!Zfp618;;chr6:38204274..38204327,-!p3@D630045J12Rik!0.21!2.13!D630045J12Rik;;chr2:37286328..37286341,-!p3@Zbtb6!0.21!2.13!Zbtb6;;chr10:67599375..67599386,-!p3@Arid5b!0.21!1.81!Arid5b;;chr11:53164556..53164567,+!p5@Aff4!0.21!1.48!Aff4;;chr8:87237732..87237745,-!p7@Nfix!0.21!1.48!Nfix;;chr7:6238175..6238186,+!p2@Zfp667!0.21!1.48!Zfp667;;chr9:69137709..69137714,+!p7@Rora!0.21!0.98!Rora;;chr9:71743910..71743915,-!p7@Tcf12!0.21!0.82!Tcf12;;chr4:150503457..150503498,-!p3@Camta1!0.21!0.82!Camta1;;chr4:135728282..135728310,+!p4@E2f2!0.21!0.82!E2f2;;chr1:135557922..135557963,-!p1@Zc3h11a!0.20!164.80!Zc3h11a;;chr9:72122773..72122820,+!p1@Zfp280d!0.20!37.42!Zfp280d;;chr13:44826722..44826742,+!p1@Jarid2!0.20!22.49!Jarid2;;chr11:80196801..80196806,+!p2@Zfp207!0.20!20.52!Zfp207;;chr7:24993112..24993158,-!p1@Zfp111!0.20!14.28!Zfp111;;chrX:35542957..35543003,+!p1@Zbtb33!0.20!14.12!Zbtb33;;chr15:76287876..76287894,+!p1@Scx!0.20!7.06!Scx;;chr9:96620228..96620308,-!p3@Zbtb38!0.20!6.07!Zbtb38;;chr6:131338363..131338383,-!p4@Csda!0.20!5.58!Csda;;chr17:84105477..84105509,+!p3@Mta3!0.20!4.92!Mta3;;chr15:38230415..38230426,-!p2@Klf10!0.20!4.27!Klf10;;chr3:95021663..95021687,-!p3@Gabpb2!0.20!4.10!Gabpb2;;chr3:152059326..152059358,+!p3@Gm8261,p3@Zzz3!0.20!3.94!Zzz3;;chr8:125778192..125778217,+!p2@Zfp276!0.20!3.28!Zfp276;;chr14:75684121..75684132,+!p2@Zc3h13!0.20!3.12!Zc3h13;;chr12:85657780..85657815,+!p2@Zfp410!0.20!2.95!Zfp410;;chr13:65380103..65380116,+!p3@Zfp369!0.20!2.79!Zfp369;;chr15:50720601..50720630,-!p2@Trps1!0.20!2.63!Trps1;;chr1:64579465..64579474,+!p5@Creb1!0.20!2.63!Creb1;;chr16:23988686..23988693,-!p2@Bcl6!0.20!2.13!Bcl6;;chr5:145962744..145962760,-!p2@Zkscan14!0.20!2.13!Zkscan14;;chr16:3872286..3872315,-!p3@Zfp597!0.20!1.97!Zfp597;;chr12:113916993..113917009,+!p2@Zbtb42!0.20!1.64!Zbtb42;;chr8:81923366..81923371,-!p5@Smad1!0.20!1.48!Smad1;;chr5:38611621..38611635,-!p2@Zbtb49!0.20!1.31!Zbtb49;;chr2:30700857..30700873,+!p3@Prrx2!0.20!1.15!Prrx2;;chr12:78063032..78063043,-!p4@Max!0.20!1.15!Max;;chr14:98568683..98568698,-!p6@Dach1!0.20!0.98!Dach1;;chr11:101646480..101646496,-!p4@Etv4!0.20!0.98!Etv4;;chr4:99322820..99322845,+!p1@Foxd3!0.20!0.98!Foxd3;;chr3:19957878..19957885,+!p2@Hltf!0.20!0.98!Hltf;;chr10:67599450..67599456,-!p8@Arid5b!0.20!0.82!Arid5b;;chr17:84587279..84587294,-!p1@Zfp36l2!0.19!147.89!Zfp36l2;;chrX:148667771..148667803,+!p1@Kdm5c!0.19!77.80!Kdm5c;;chr3:103772250..103772317,+!p1@Phtf1!0.19!26.75!Phtf1;;chr6:122769906..122769956,+!p1@Foxj2!0.19!22.49!Foxj2;;chr11:106134241..106134320,-!p2@Smarcd2!0.19!15.27!Smarcd2;;chr16:87699237..87699279,+!p1@Bach1!0.19!14.12!Bach1;;chr19:40969182..40969226,+!p1@Zfp518a!0.19!11.00!Zfp518a;;chr3:95021612..95021650,-!p2@Gabpb2!0.19!6.40!Gabpb2;;chr14:22807107..22807119,-!p2@Zfp503!0.19!5.42!Zfp503;;chr15:99532528..99532550,+!p3@Smarcd1!0.19!4.27!Smarcd1;;chr1:133904217..133904250,+!p5@Elk4!0.19!3.78!Elk4;;chr3:152058408..152058453,+!p5@Gm8261,p5@Zzz3!0.19!2.30!Zzz3;;chr10:80812991..80813004,-!p3@Hmg20b!0.19!2.13!Hmg20b;;chr6:47545052..47545064,-!p2@Ezh2!0.19!1.97!Ezh2;;chr5:139060979..139060986,-!p4@Zfp68!0.19!1.81!Zfp68;;chr13:58501849..58501853,-!p5@Hnrnpk!0.19!1.64!Hnrnpk;;chr2:153067138..153067147,-!p3@Plagl2!0.19!1.48!Plagl2;;chr9:122775126..122775133,-!p3@Zfp445!0.19!1.48!Zfp445;;chr2:30700788..30700824,+!p2@Prrx2!0.19!1.31!Prrx2;;chr5:108494686..108494701,+!p3@Mtf2!0.19!1.15!Mtf2;;chrX:48559055..48559077,-!p6@Mbnl3!0.19!0.98!Mbnl3;;chr4:61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@@ Line 44: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs11108
+|library_id_phase_based=2:CNhs11108
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;762
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;762
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N10.CNhs11108.762-6C4.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N10.CNhs11108.762-6C4.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N10.CNhs11108.762-6C4.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N10.CNhs11108.762-6C4.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/skin%252c%2520neonate%2520N10.CNhs11108.762-6C4.mm9.nobarcode.rdna.fa.gz
 |name=skin, neonate N10
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11108,LSID733,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.12612500386521,0,0,0,0,0,0.205828127264178,0,0.113477055367244,0,0,0.0895526054919591,0,0,0,0,0,0,-0.0686031290278659,0,0.373936726162728,0,0,0.0660055475634404,0.0660055475634404,0,0,0,0,0,0,0,0.149447240927407,0,0,0,0,0,-0.0462002190656342,-0.0083099877199988,0.215093372712309,0.134596353876916,-0.269868638010351,0,0,0,0,0,0,1.07310585233081,0,0,0,0,0.0660055475634404,0,0,0,0,0,-0.0428469550828748,0,0.0684230315656265,0,0,0.010932901192252,0.110108427056188,0.0535488577716878,0.0158008031174181,-0.0035899352151333,0,0,0,0,0.123290221854709,0,0.0222471949896263,-0.127118568466565,0.125703134776229,-0.0788315948399074,0,0,0,0,0,0,0.0500597172817928,0.245387646379944,0.0264335536517655,0,0,0,0,0
@@ Line 86: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:762-6C4;search_select_hide=table117:762-6C4
 }}

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FF:762-6C4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:20, 4 June 2020

CNhs11108

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0