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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008488
|DRA_sample_Accession=CAGE@SAMD00005700
|accession_numbers=CAGE;DRX008596;DRR009468;DRZ000893;DRZ002278
|accession_numbers=CAGE;DRX008596;DRR009468;DRZ000893;DRZ002278;DRZ012243;DRZ013628
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000150,CL:0000255,CL:0002077,CL:0000148
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000150,CL:0000255,CL:0002077,CL:0000148
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr22:38380543..38380569,-!p1@SOX10!2.72!521.35!SOX10;;chr3:69985734..69985749,+!p2@MITF!2.60!399.87!MITF;;chr6:10412600..10412637,-!p1@TFAP2A!2.28!305.83!TFAP2A;;chr2:223163706..223163730,-!p1@PAX3!2.27!183.79!PAX3;;chr6:391743..391759,+!p1@IRF4!2.21!161.21!IRF4;;chr6:10415276..10415341,-!p2@TFAP2A!2.15!170.35!TFAP2A;;chr15:42749722..42749739,-!p2@ZFP106!2.10!216.08!ZFP106;;chr6:10415484..10415508,-!p3@TFAP2A!2.04!108.61!TFAP2A;;chr2:239148671..239148686,-!p1@HES6!1.72!179.21!HES6;;chr11:125034640..125034655,+!p1@PKNOX2!1.62!41.16!PKNOX2;;chr19:3574330..3574393,+!p2@HMG20B!1.62!40.87!HMG20B;;chr16:67198683..67198698,+!p2@HSF4!1.60!38.87!HSF4;;chr3:69985792..69985803,+!p7@MITF!1.59!38.30!MITF;;chr6:10412576..10412599,-!p5@TFAP2A!1.58!36.59!TFAP2A;;chr10:111987079..111987115,+!p3@MXI1!1.56!47.45!MXI1;;chr20:50179368..50179392,-!p2@NFATC2!1.50!38.87!NFATC2;;chr19:3574157..3574180,+!p4@HMG20B!1.50!30.30!HMG20B;;chr16:67198633..67198671,+!p1@HSF4!1.43!26.01!HSF4;;chr17:59477233..59477263,+!p1@TBX2!1.39!71.46!TBX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.34!23.72!TFAP2A;;chr8:72756637..72756664,-!p3@MSC!1.32!22.58!MSC;;chr12:26277817..26277863,-!p2@BHLHE41!1.27!23.72!BHLHE41;;chr2:145277882..145277967,-!p3@ZEB2!1.26!29.44!ZEB2;;chr6:10415263..10415274,-!p8@TFAP2A!1.26!17.15!TFAP2A;;chr9:102584262..102584276,+!p1@NR4A3!1.25!37.44!NR4A3;;chr1:158985493..158985535,+!p4@IFI16!1.24!24.58!IFI16;;chr19:3574400..3574430,+!p6@HMG20B!1.24!16.58!HMG20B;;chr12:54393880..54393962,+!p1@HOXC9!1.22!15.72!HOXC9;;chr8:49833978..49833996,-!p1@SNAI2!1.19!295.83!SNAI2;;chr1:63788229..63788250,+!p1@FOXD3!1.19!14.58!FOXD3;;chr5:321810..321877,+!p1@AHRR!1.18!44.59!AHRR;;chr2:145277640..145277771,-!p1@ZEB2!1.16!180.07!ZEB2;;chr17:46688334..46688385,-!p1@HOXB7!1.15!19.15!HOXB7;;chr11:706938..707008,-!p3@DEAF1!1.15!16.58!DEAF1;;chr15:57511609..57511651,+!p2@TCF12!1.11!20.01!TCF12;;chr17:59477275..59477286,+!p3@TBX2!1.11!15.72!TBX2;;chr11:125034605..125034636,+!p2@PKNOX2!1.11!12.00!PKNOX2;;chr17:46806067..46806097,-!p1@HOXB13!1.10!11.72!HOXB13;;chr1:25256756..25256774,-!p1@RUNX3!1.09!21.15!RUNX3;;chr8:49833948..49833973,-!p2@SNAI2!1.06!68.03!SNAI2;;chr12:26277956..26277980,-!p1@BHLHE41!1.06!38.01!BHLHE41;;chr8:72756267..72756296,-!p4@MSC!1.04!14.58!MSC;;chr13:41635759..41635774,-!p21@ELF1!1.04!10.00!ELF1;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.72!KDM5D;;chr19:57946684..57946723,+!p1@ZNF749!1.02!106.61!ZNF749;;chr1:158969752..158969780,+!p6@IFI16!1.02!16.58!IFI16;;chr1:158979686..158979745,+!p1@IFI16!1.01!310.41!IFI16;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.01!9.15!HOXC5;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.15!ALX1;;chr8:128748308..128748324,+!p2@MYC!1.00!256.10!MYC;;chr3:185826855..185826911,-!p1@ETV5!0.99!245.81!ETV5;;chr3:178789522..178789564,-!p2@ZMAT3!0.98!64.88!ZMAT3;;chr2:96012397..96012417,+!p3@KCNIP3!0.98!8.57!KCNIP3;;chr17:59477197..59477212,+!p2@TBX2!0.97!14.58!TBX2;;chr4:109089095..109089144,-!p6@LEF1!0.97!8.29!LEF1;;chr1:165414325..165414369,-!p1@RXRG!0.97!8.29!RXRG;;chr14:75988771..75988826,+!p1@BATF!0.96!10.86!BATF;;chr8:72756667..72756736,-!p2@MSC!0.94!12.29!MSC;;chr6:10412477..10412490,-!p10@TFAP2A!0.94!7.72!TFAP2A;;chr12:26277929..26277955,-!p3@BHLHE41!0.93!10.86!BHLHE41;;chr16:29819122..29819141,+!p34@MAZ!0.93!7.43!MAZ;;chr7:44143925..44143970,+!p1@AEBP1!0.90!164.35!AEBP1;;chr16:54964740..54964789,+!p1@IRX5!0.90!10.29!IRX5;;chr20:50179584..50179611,-!p6@NFATC2!0.90!6.86!NFATC2;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.86!ZFY;;chr11:128392273..128392308,-!p2@ETS1!0.89!30.30!ETS1;;chr8:72756063..72756125,-!p1@MSC!0.89!14.01!MSC;;chr9:2158443..2158481,+!p2@SMARCA2!0.88!19.72!SMARCA2;;chr9:16728327..16728338,-!p5@BNC2!0.88!6.57!BNC2;;chr6:10412262..10412271,-!p21@TFAP2A!0.86!6.29!TFAP2A;;chr12:24103844..24103880,-!p3@SOX5!0.86!6.29!SOX5;;chr2:176994408..176994492,+!p1@HOXD8!0.86!6.29!HOXD8;;chr4:109088940..109089037,-!p4@LEF1!0.85!6.00!LEF1;;chr2:96012353..96012378,+!p4@KCNIP3!0.83!5.72!KCNIP3;;chrX:106965183..106965214,-!p13@TSC22D3!0.83!5.72!TSC22D3;;chr12:54380404..54380433,+!p3@HOXC10!0.83!5.72!HOXC10;;chr8:72756213..72756243,-!p5@MSC!0.82!7.43!MSC;;chr5:124082322..124082364,-!p1@ZNF608!0.81!14.86!ZNF608;;chr12:54378923..54378966,+!p1@HOXC10!0.81!5.43!HOXC10;;chr12:54379477..54379498,+!p5@HOXC5!0.81!5.43!HOXC5;;chr12:85673868..85673881,+!p2@ALX1!0.81!5.43!ALX1;;chr17:46682321..46682362,-!p1@HOXB6!0.81!5.43!HOXB6;;chr3:69788576..69788648,+!p1@MITF!0.80!30.58!MITF;;chr16:79634624..79634642,-!p1@MAF!0.80!22.58!MAF;;chr9:102584241..102584261,+!p4@NR4A3!0.80!8.57!NR4A3;;chr12:24715376..24715432,-!p1@SOX5!0.80!6.86!SOX5;;chr8:102217679..102217719,-!p2@ZNF706!0.79!19.15!ZNF706;;chr17:46806035..46806059,-!p2@HOXB13!0.79!5.14!HOXB13;;chr17:40440481..40440550,+!p1@STAT5A!0.78!39.73!STAT5A;;chr19:3572758..3572795,+!p7@HMG20B!0.77!4.86!HMG20B;;chr2:145275982..145276003,-!p7@ZEB2!0.77!4.86!ZEB2;;chr12:85674018..85674039,+!p3@ALX1!0.77!4.86!ALX1;;chr20:55204351..55204377,+!p1@TFAP2C!0.7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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077
|ffid_belonging_in_development=CL:0000133,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 42:
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12837-137B2
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12837-137B2
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg38.nobarcode.ctss.bed.gz
|id=FF:12837-137B2
|id=FF:12837-137B2
|is_a=CL:0000150;;EFO:0002091;;FF:0000730
|is_a=CL:0000150;;EFO:0002091;;FF:0000730
|is_obsolete=
|is_obsolete=
|library_id=CNhs13406
|library_id=CNhs13406
|library_id_phase_based=1:CNhs13406
|library_id_phase_based=2:CNhs13406
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12837
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12837
|name=Melanocyte, donor3 (MC+3)
|name=Melanocyte, donor3 (MC+3)
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13406,LSID1023,release014,COMPLETED
|profile_hcage=CNhs13406,LSID1023,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=time courses
Line 88: Line 99:
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|sample_tissue=skin
|timecourse=Melanocytic_differentiation
|top_motifs=HOX{A6,A7,B6,B7}:2.82523004652;PAX6:2.37931126378;NR3C1:2.22951145333;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.21102716681;SREBF1,2:2.05953754311;ESRRA:1.82850888911;NFE2L1:1.81532369652;bHLH_family:1.33983178621;NANOG:1.33484325844;RXR{A,B,G}:1.26701883261;FOXQ1:1.2612032939;NFIX:1.26014394747;PAX4:1.21339652457;PAX8:1.10051908053;POU3F1..4:1.01542560356;ZNF423:0.854513904922;RFX2..5_RFXANK_RFXAP:0.849400969167;HOX{A4,D4}:0.817764521183;NR5A1,2:0.760836630975;NKX2-3_NKX2-5:0.742856843509;TFDP1:0.717513577027;POU6F1:0.696912504926;SOX5:0.696382466368;VSX1,2:0.686059674816;EN1,2:0.684810628115;PAX1,9:0.623355721616;PRRX1,2:0.612253979892;XCPE1{core}:0.570724518348;EBF1:0.546442763347;LHX3,4:0.528616930818;POU1F1:0.528516311636;IRF7:0.509719211221;PBX1:0.504335845292;ZNF143:0.498586900055;HES1:0.492382389047;ALX1:0.484659421617;NRF1:0.480602153696;OCT4_SOX2{dimer}:0.478515388124;EVI1:0.476454107479;PAX5:0.460257525415;SOX{8,9,10}:0.455445549273;ZNF238:0.440845673193;TP53:0.438769441964;NHLH1,2:0.42266484785;CDC5L:0.378950927766;GFI1:0.366324585971;HBP1_HMGB_SSRP1_UBTF:0.346668194017;ZFP161:0.342633918769;GTF2A1,2:0.320595216828;XBP1:0.296612348071;STAT1,3:0.277615569671;HNF4A_NR2F1,2:0.27467920168;REST:0.249384869845;TFCP2:0.229109415819;ZBTB6:0.226403107799;ELK1,4_GABP{A,B1}:0.205753655166;JUN:0.204298979106;IRF1,2:0.194709506851;HMX1:0.173328047419;CUX2:0.170693831712;ALX4:0.166134455606;HIC1:0.152638467064;AHR_ARNT_ARNT2:0.146318764551;GFI1B:0.141042245969;YY1:0.138721536399;SOX2:0.13561505764;TLX1..3_NFIC{dimer}:0.114482732594;GTF2I:0.0868266665331;TEF:0.0657764537925;ONECUT1,2:0.0589022435799;FOXD3:0.0500054434733;UFEwm:0.033574741423;SP1:0.0217620376949;FOX{F1,F2,J1}:0.0149635501442;RORA:0.00121271743072;RFX1:-0.0244456323182;SPZ1:-0.0469498447487;E2F1..5:-0.0489623415284;NFY{A,B,C}:-0.05099384617;TOPORS:-0.0584834155134;ZBTB16:-0.0637249555099;TFAP2B:-0.0675572669348;NKX6-1,2:-0.076930350153;IKZF2:-0.0927388956845;ATF4:-0.103390992583;MYBL2:-0.108281560141;FOX{D1,D2}:-0.129601238261;AR:-0.14893646472;HOXA9_MEIS1:-0.153357387916;RXRA_VDR{dimer}:-0.157487934772;NFIL3:-0.159279509675;HNF1A:-0.166228878406;RUNX1..3:-0.173638667413;ADNP_IRX_SIX_ZHX:-0.177742390857;ATF5_CREB3:-0.1792406099;ELF1,2,4:-0.183410128947;SOX17:-0.204689973796;CREB1:-0.20478443795;MED-1{core}:-0.221466296769;SMAD1..7,9:-0.22712788237;FOXP3:-0.244750303399;SPIB:-0.246844690654;ESR1:-0.248072684153;NFE2L2:-0.255936553969;TEAD1:-0.256464429754;TFAP2{A,C}:-0.257581995728;PAX2:-0.261980857033;KLF4:-0.268187731077;FOXL1:-0.273114989952;NKX3-1:-0.277470335942;EP300:-0.277477845363;MYB:-0.278128820165;CDX1,2,4:-0.284112741213;FOXA2:-0.300233314589;DMAP1_NCOR{1,2}_SMARC:-0.305473509332;TGIF1:-0.308647192204;SPI1:-0.312022871134;FOSL2:-0.312542571236;PRDM1:-0.319991504477;LMO2:-0.321772159609;MAZ:-0.326773955022;BACH2:-0.332418897769;TAL1_TCF{3,4,12}:-0.333787951763;IKZF1:-0.342738073554;FOXM1:-0.348949015378;BPTF:-0.36711811403;MYFfamily:-0.369473802566;CRX:-0.377031087798;MTF1:-0.393406585673;FOX{I1,J2}:-0.393698994353;PITX1..3:-0.402209202726;MEF2{A,B,C,D}:-0.40521800355;STAT5{A,B}:-0.405851466904;NR1H4:-0.407993539143;GZF1:-0.414385858443;ARID5B:-0.419398909356;GATA4:-0.425545801601;BREu{core}:-0.431172580733;HAND1,2:-0.433618255999;NKX3-2:-0.435859331689;LEF1_TCF7_TCF7L1,2:-0.436894281686;FOXO1,3,4:-0.442744323198;ZIC1..3:-0.444487545664;NFE2:-0.449509709673;HOX{A5,B5}:-0.454666000016;FOS_FOS{B,L1}_JUN{B,D}:-0.466251045266;NFKB1_REL_RELA:-0.471442841498;NKX2-2,8:-0.485233738863;RREB1:-0.492222106502;ZNF384:-0.505868390489;ZNF148:-0.510074193027;NFATC1..3:-0.512479546024;HMGA1,2:-0.51553586654;AIRE:-0.52391724998;ETS1,2:-0.532831903041;HLF:-0.539558369196;CEBPA,B_DDIT3:-0.561557504097;ATF2:-0.565760884381;FOXP1:-0.572069006264;PATZ1:-0.578109196776;MZF1:-0.589237582855;EGR1..3:-0.602375354063;NR6A1:-0.624983721795;SNAI1..3:-0.635961454218;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.669279537388;RBPJ:-0.684783534835;HSF1,2:-0.686164213159;GATA6:-0.687199729383;STAT2,4,6:-0.69361497823;MTE{core}:-0.697072206357;GCM1,2:-0.704201941951;DBP:-0.725954757002;TFAP4:-0.736770869254;PAX3,7:-0.788523683131;NANOG{mouse}:-0.789769138688;POU2F1..3:-0.803658823478;PPARG:-0.807213226966;ZEB1:-0.810736106864;T:-0.916828020551;GLI1..3:-0.932134555477;PDX1:-0.962366307434;TLX2:-1.02515145216;SRF:-1.04850774786;MAFB:-1.0658466004;MYOD1:-1.08633491132;FOXN1:-1.10159462127;HIF1A:-1.18238202912;TBX4,5:-1.21927138699;NKX2-1,4:-1.26330974154;ATF6:-1.39347525317;POU5F1:-1.72163507413;TBP:-1.81062515908
|top_motifs=HOX{A6,A7,B6,B7}:2.82523004652;PAX6:2.37931126378;NR3C1:2.22951145333;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.21102716681;SREBF1,2:2.05953754311;ESRRA:1.82850888911;NFE2L1:1.81532369652;bHLH_family:1.33983178621;NANOG:1.33484325844;RXR{A,B,G}:1.26701883261;FOXQ1:1.2612032939;NFIX:1.26014394747;PAX4:1.21339652457;PAX8:1.10051908053;POU3F1..4:1.01542560356;ZNF423:0.854513904922;RFX2..5_RFXANK_RFXAP:0.849400969167;HOX{A4,D4}:0.817764521183;NR5A1,2:0.760836630975;NKX2-3_NKX2-5:0.742856843509;TFDP1:0.717513577027;POU6F1:0.696912504926;SOX5:0.696382466368;VSX1,2:0.686059674816;EN1,2:0.684810628115;PAX1,9:0.623355721616;PRRX1,2:0.612253979892;XCPE1{core}:0.570724518348;EBF1:0.546442763347;LHX3,4:0.528616930818;POU1F1:0.528516311636;IRF7:0.509719211221;PBX1:0.504335845292;ZNF143:0.498586900055;HES1:0.492382389047;ALX1:0.484659421617;NRF1:0.480602153696;OCT4_SOX2{dimer}:0.478515388124;EVI1:0.476454107479;PAX5:0.460257525415;SOX{8,9,10}:0.455445549273;ZNF238:0.440845673193;TP53:0.438769441964;NHLH1,2:0.42266484785;CDC5L:0.378950927766;GFI1:0.366324585971;HBP1_HMGB_SSRP1_UBTF:0.346668194017;ZFP161:0.342633918769;GTF2A1,2:0.320595216828;XBP1:0.296612348071;STAT1,3:0.277615569671;HNF4A_NR2F1,2:0.27467920168;REST:0.249384869845;TFCP2:0.229109415819;ZBTB6:0.226403107799;ELK1,4_GABP{A,B1}:0.205753655166;JUN:0.204298979106;IRF1,2:0.194709506851;HMX1:0.173328047419;CUX2:0.170693831712;ALX4:0.166134455606;HIC1:0.152638467064;AHR_ARNT_ARNT2:0.146318764551;GFI1B:0.141042245969;YY1:0.138721536399;SOX2:0.13561505764;TLX1..3_NFIC{dimer}:0.114482732594;GTF2I:0.0868266665331;TEF:0.0657764537925;ONECUT1,2:0.0589022435799;FOXD3:0.0500054434733;UFEwm:0.033574741423;SP1:0.0217620376949;FOX{F1,F2,J1}:0.0149635501442;RORA:0.00121271743072;RFX1:-0.0244456323182;SPZ1:-0.0469498447487;E2F1..5:-0.0489623415284;NFY{A,B,C}:-0.05099384617;TOPORS:-0.0584834155134;ZBTB16:-0.0637249555099;TFAP2B:-0.0675572669348;NKX6-1,2:-0.076930350153;IKZF2:-0.0927388956845;ATF4:-0.103390992583;MYBL2:-0.108281560141;FOX{D1,D2}:-0.129601238261;AR:-0.14893646472;HOXA9_MEIS1:-0.153357387916;RXRA_VDR{dimer}:-0.157487934772;NFIL3:-0.159279509675;HNF1A:-0.166228878406;RUNX1..3:-0.173638667413;ADNP_IRX_SIX_ZHX:-0.177742390857;ATF5_CREB3:-0.1792406099;ELF1,2,4:-0.183410128947;SOX17:-0.204689973796;CREB1:-0.20478443795;MED-1{core}:-0.221466296769;SMAD1..7,9:-0.22712788237;FOXP3:-0.244750303399;SPIB:-0.246844690654;ESR1:-0.248072684153;NFE2L2:-0.255936553969;TEAD1:-0.256464429754;TFAP2{A,C}:-0.257581995728;PAX2:-0.261980857033;KLF4:-0.268187731077;FOXL1:-0.273114989952;NKX3-1:-0.277470335942;EP300:-0.277477845363;MYB:-0.278128820165;CDX1,2,4:-0.284112741213;FOXA2:-0.300233314589;DMAP1_NCOR{1,2}_SMARC:-0.305473509332;TGIF1:-0.308647192204;SPI1:-0.312022871134;FOSL2:-0.312542571236;PRDM1:-0.319991504477;LMO2:-0.321772159609;MAZ:-0.326773955022;BACH2:-0.332418897769;TAL1_TCF{3,4,12}:-0.333787951763;IKZF1:-0.342738073554;FOXM1:-0.348949015378;BPTF:-0.36711811403;MYFfamily:-0.369473802566;CRX:-0.377031087798;MTF1:-0.393406585673;FOX{I1,J2}:-0.393698994353;PITX1..3:-0.402209202726;MEF2{A,B,C,D}:-0.40521800355;STAT5{A,B}:-0.405851466904;NR1H4:-0.407993539143;GZF1:-0.414385858443;ARID5B:-0.419398909356;GATA4:-0.425545801601;BREu{core}:-0.431172580733;HAND1,2:-0.433618255999;NKX3-2:-0.435859331689;LEF1_TCF7_TCF7L1,2:-0.436894281686;FOXO1,3,4:-0.442744323198;ZIC1..3:-0.444487545664;NFE2:-0.449509709673;HOX{A5,B5}:-0.454666000016;FOS_FOS{B,L1}_JUN{B,D}:-0.466251045266;NFKB1_REL_RELA:-0.471442841498;NKX2-2,8:-0.485233738863;RREB1:-0.492222106502;ZNF384:-0.505868390489;ZNF148:-0.510074193027;NFATC1..3:-0.512479546024;HMGA1,2:-0.51553586654;AIRE:-0.52391724998;ETS1,2:-0.532831903041;HLF:-0.539558369196;CEBPA,B_DDIT3:-0.561557504097;ATF2:-0.565760884381;FOXP1:-0.572069006264;PATZ1:-0.578109196776;MZF1:-0.589237582855;EGR1..3:-0.602375354063;NR6A1:-0.624983721795;SNAI1..3:-0.635961454218;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.669279537388;RBPJ:-0.684783534835;HSF1,2:-0.686164213159;GATA6:-0.687199729383;STAT2,4,6:-0.69361497823;MTE{core}:-0.697072206357;GCM1,2:-0.704201941951;DBP:-0.725954757002;TFAP4:-0.736770869254;PAX3,7:-0.788523683131;NANOG{mouse}:-0.789769138688;POU2F1..3:-0.803658823478;PPARG:-0.807213226966;ZEB1:-0.810736106864;T:-0.916828020551;GLI1..3:-0.932134555477;PDX1:-0.962366307434;TLX2:-1.02515145216;SRF:-1.04850774786;MAFB:-1.0658466004;MYOD1:-1.08633491132;FOXN1:-1.10159462127;HIF1A:-1.18238202912;TBX4,5:-1.21927138699;NKX2-1,4:-1.26330974154;ATF6:-1.39347525317;POU5F1:-1.72163507413;TBP:-1.81062515908
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12837-137B2;search_select_hide=table117:FF:12837-137B2
}}
}}

Latest revision as of 18:46, 4 June 2020

Name:Melanocyte, donor3 (MC+3)
Species:Human (Homo sapiens)
Library ID:CNhs13406
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexmale
ageNA
cell typemelanocyte
cell lineNA
companyNA
collaborationSusan Zabierowski (Wistar Institute)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005700
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13406 CAGE DRX008596 DRR009468
Accession ID Hg19

Library idBAMCTSS
CNhs13406 DRZ000893 DRZ002278
Accession ID Hg38

Library idBAMCTSS
CNhs13406 DRZ012243 DRZ013628
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0953
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0022
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0238
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.038
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0.109
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.241
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.044
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0735
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.375
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.809
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.422
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0814
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.269
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.947
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0315
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.646
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13406

Jaspar motifP-value
MA0002.20.286
MA0003.10.982
MA0004.12.63064e-4
MA0006.10.0632
MA0007.10.85
MA0009.10.522
MA0014.10.203
MA0017.10.764
MA0018.20.77
MA0019.10.557
MA0024.10.611
MA0025.10.0316
MA0027.10.831
MA0028.10.0359
MA0029.10.435
MA0030.10.576
MA0031.10.879
MA0035.20.75
MA0038.10.284
MA0039.20.241
MA0040.10.661
MA0041.10.346
MA0042.10.889
MA0043.10.00945
MA0046.10.114
MA0047.20.977
MA0048.10.851
MA0050.10.118
MA0051.10.0604
MA0052.10.00423
MA0055.10.0424
MA0057.10.596
MA0058.14.08324e-8
MA0059.13.95848e-4
MA0060.10.137
MA0061.13.36011e-5
MA0062.20.0867
MA0065.20.299
MA0066.10.247
MA0067.10.002
MA0068.10.325
MA0069.10.412
MA0070.10.0634
MA0071.10.91
MA0072.10.306
MA0073.10.612
MA0074.10.201
MA0076.10.177
MA0077.10.59
MA0078.10.681
MA0079.20.282
MA0080.27.21611e-6
MA0081.10.729
MA0083.10.00131
MA0084.10.66
MA0087.10.244
MA0088.10.0338
MA0090.10.174
MA0091.10.858
MA0092.10.326
MA0093.11.51823e-4
MA0099.29.56993e-11
MA0100.10.407
MA0101.10.0183
MA0102.28.31097e-4
MA0103.10.0143
MA0104.22.02017e-5
MA0105.10.0046
MA0106.10.0747
MA0107.19.64016e-4
MA0108.22.34247e-11
MA0111.10.71
MA0112.20.0843
MA0113.10.462
MA0114.10.293
MA0115.10.864
MA0116.10.031
MA0117.10.00962
MA0119.10.734
MA0122.10.905
MA0124.10.156
MA0125.10.0197
MA0131.10.928
MA0135.10.313
MA0136.11.15986e-4
MA0137.20.535
MA0138.20.725
MA0139.10.811
MA0140.10.989
MA0141.10.0667
MA0142.10.686
MA0143.10.156
MA0144.10.278
MA0145.10.375
MA0146.10.193
MA0147.19.37881e-4
MA0148.10.983
MA0149.10.197
MA0150.10.00386
MA0152.10.883
MA0153.10.722
MA0154.10.163
MA0155.10.563
MA0156.10.00481
MA0157.10.788
MA0159.10.159
MA0160.10.645
MA0162.10.291
MA0163.10.937
MA0164.10.542
MA0258.10.856
MA0259.10.0643



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13406

Novel motifP-value
10.936
100.654
1000.471
1010.757
1020.193
1030.0264
1040.968
1050.0719
1060.00266
1070.00535
1080.741
1090.969
110.452
1100.103
1110.878
1120.615
1130.0186
1140.263
1150.634
1160.0236
1170.496
1180.343
1190.256
120.398
1200.439
1210.1
1220.724
1230.346
1240.69
1250.137
1260.442
1270.907
1280.684
1290.254
130.459
1300.831
1310.426
1320.258
1330.792
1340.632
1350.563
1360.0269
1370.678
1380.428
1390.0466
140.826
1400.44
1410.705
1420.112
1430.455
1440.509
1450.851
1460.344
1470.629
1480.316
1490.239
150.746
1500.396
1510.992
1520.271
1530.641
1540.119
1550.821
1560.899
1570.394
1580.142
1590.264
160.684
1600.743
1610.679
1620.137
1630.746
1640.759
1650.305
1660.244
1670.431
1680.841
1690.252
170.492
180.505
190.674
20.0419
200.21
210.441
220.529
230.0846
240.551
250.531
260.433
270.667
280.849
290.116
30.89
300.186
310.292
320.00567
330.585
340.605
350.52
360.837
370.297
380.864
390.775
40.159
400.233
410.502
420.265
430.316
440.246
450.232
460.918
470.575
480.464
490.273
50.592
500.867
510.988
520.246
530.31
540.898
550.22
560.748
570.121
580.0589
590.481
60.0855
600.16
610.663
620.00317
630.633
640.822
650.901
660.171
670.454
680.0189
690.991
70.765
700.861
710.514
720.67
730.558
740.867
750.85
760.304
770.371
780.327
790.768
80.878
800.647
810.526
820.86
830.558
840.828
850.934
860.849
870.0269
880.581
890.826
90.302
900.385
910.754
920.025
930.157
940.896
950.343
960.614
970.625
980.111
990.45



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13406


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000150 (glandular epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000730 (human melanocyte (MC) sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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