FFCP PHASE2:Hg19::chr13:28543388..28543406,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:1045 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding |HGNC=HGNC:1806 |TSSclassifier=strong ...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1045 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | ||
|HGNC= | |HGNC=1806 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q99626 | ||
|association_with_transcript=-71bp_to_NM_001265,uc001urv.2_5end | |association_with_transcript=-71bp_to_NM_001265,uc001urv.2_5end | ||
|cluster_id=chr13:28543388..28543406,- | |cluster_id=chr13:28543388..28543406,- | ||
Latest revision as of 23:39, 16 September 2015
| Short description: | p3@CDX2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_CDX2_5end |
| Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
| Association with transcript: | -71bp_to_NM_001265, uc001urv.2_5end |
| EntrezGene: | CDX2 |
| HGNC: | 1806 |
| UniProt: | Q99626 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@CDX2 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 1.08e-21 | 4 |
| epithelial cell of large intestine | 1.24e-19 | 2 |
| epithelial cell of alimentary canal | 1.40e-07 | 20 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| intestine | 1.38e-83 | 17 |
| gastrointestinal system | 2.48e-66 | 25 |
| large intestine | 2.22e-52 | 11 |
| lower digestive tract | 1.31e-45 | 5 |
| rectum | 4.57e-37 | 4 |
| colon | 1.86e-36 | 9 |
| small intestine | 3.20e-29 | 4 |
| intestinal mucosa | 1.08e-21 | 4 |
| wall of intestine | 1.08e-21 | 4 |
| gastrointestinal system mucosa | 1.08e-21 | 4 |
Showing 1 to 10 of 31 entries
| Ontology term | p-value | n |
|---|---|---|
| gastrointestinal system cancer | 3.46e-16 | 14 |
| adenocarcinoma | 7.11e-09 | 25 |
Showing 1 to 2 of 2 entries
