FFCP PHASE1:Mm9::chr6:48398099..48398121,+: Difference between revisions
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|id=chr6:48398099..48398121,+
|short_description=p2@LOC100505089,p2@Sspo
|description=CAGE_peak_2_at_LOC100505089_5end,CAGE_peak_2_at_Sspo_5end
|association_with_tr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=100505089,243369 | |EntrezGene=100505089,243369 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=189 | |||
|TSSclassifier=NA | |||
|UniProt=Q8CG65,E9Q0I4 | |UniProt=Q8CG65,E9Q0I4 | ||
|association_with_transcript=-106bp_to_ENSMUST00000043676,ENSMUST00000169350,NM_173428,uc009buk.2_5end | |||
|cluster_id=chr6:48398099..48398121,+ | |||
|description=CAGE_peak_2_at_LOC100505089_5end,CAGE_peak_2_at_Sspo_5end | |||
|id=chr6:48398099..48398121,+ | |||
|ontology_enrichment_celltype=CL:0002610!5.71e-14!3;CL:0002613!3.52e-13!3;CL:0000117!2.85e-08!23;CL:0000337!2.85e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,2.09e-38,3;CL:0002613,3.41e-17,3;CL:0000117,7.13e-14,23;CL:0000337,7.13e-14,23;CL:0000540,9.11e-10,33;CL:0000047,9.11e-10,33;CL:0000031,9.11e-10,33;CL:0000404,9.11e-10,33;CL:0000393,2.64e-08,39;CL:0000211,2.64e-08,39;CL:0002319,1.49e-07,43;CL:0000221,2.19e-07,44;CL:0000133,2.19e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004684!5.71e-14!3;UBERON:0002275!5.71e-14!3;UBERON:0007811!1.18e-09!86;UBERON:0000153!1.38e-08!94;UBERON:0000369!4.28e-08!5;UBERON:0002435!4.28e-08!5;UBERON:0000204!4.28e-08!5;UBERON:0010082!4.28e-08!5;UBERON:0002370!1.00e-07!23;UBERON:0000974!1.00e-07!23;UBERON:0004807!1.00e-07!23;UBERON:0005058!1.00e-07!23;UBERON:0003351!1.00e-07!23;UBERON:0009113!1.00e-07!23;UBERON:0003295!1.00e-07!23;UBERON:0009722!1.00e-07!23;UBERON:0005562!1.00e-07!23;UBERON:0007690!1.00e-07!23;UBERON:0006562!2.27e-07!24;UBERON:0003408!2.27e-07!24;UBERON:0001557!2.27e-07!24;UBERON:0001042!2.27e-07!24;UBERON:0008814!2.27e-07!24;UBERON:0009145!2.27e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,2.09e-38,3;UBERON:0002275,2.09e-38,3;UBERON:0000073,1.59e-11,54;UBERON:0000369,9.88e-11,5;UBERON:0002435,9.88e-11,5;UBERON:0000204,9.88e-11,5;UBERON:0010082,9.88e-11,5;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0002420,4.66e-07,8;UBERON:0007245,4.66e-07,8;UBERON:0010009,4.66e-07,8;UBERON:0010011,4.66e-07,8;UBERON:0000454,4.66e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10115880999389,5.87361755191863,3.99376986466233,0.263772575460388,1.00636407962651,1.04182674111352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748953197024114,0,0,0,0,1.87009240103604,1.46017136760982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0.39736270956253,0.120195449519969,0.295379054349154,0,0.228620419965,0,0.194915761479505,0.288635524920988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412070114477788,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0.169229215783353,0,0,0,0,0,0.0985044823755635,0,0,0,0.249810577937946,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10115880999389,5.87361755191863,3.99376986466233,0.263772575460388,1.00636407962651,1.04182674111352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748953197024114,0,0,0,0,1.87009240103604,1.46017136760982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0.39736270956253,0.120195449519969,0.295379054349154,0,0.228620419965,0,0.194915761479505,0.288635524920988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412070114477788,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0.169229215783353,0,0,0,0,0,0.0985044823755635,0,0,0,0.249810577937946,0,0,0,0,0 | ||
|short_description=p2@LOC100505089,p2@Sspo | |||
}} | }} |
Latest revision as of 07:17, 27 September 2015
Short description: | p2@LOC100505089, p2@Sspo |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LOC100505089_5end, CAGE_peak_2_at_Sspo_5end |
Coexpression cluster: | MCL_coexpression_mm9:189 |
Association with transcript: | -106bp_to_ENSMUST00000043676, ENSMUST00000169350, NM_173428, uc009buk.2_5end |
EntrezGene: | 100505089,243369 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 2.09e-38 | 3 |
striatum neuron | 3.41e-17 | 3 |
CNS neuron (sensu Vertebrata) | 7.13e-14 | 23 |
neuroblast (sensu Vertebrata) | 7.13e-14 | 23 |
neuron | 9.11e-10 | 33 |
neuronal stem cell | 9.11e-10 | 33 |
neuroblast | 9.11e-10 | 33 |
electrically signaling cell | 9.11e-10 | 33 |
electrically responsive cell | 2.64e-08 | 39 |
electrically active cell | 2.64e-08 | 39 |
neural cell | 1.49e-07 | 43 |
ectodermal cell | 2.19e-07 | 44 |
neurectodermal cell | 2.19e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 2.09e-38 | 3 |
reticular formation | 2.09e-38 | 3 |
regional part of nervous system | 1.59e-11 | 54 |
corpus striatum | 9.88e-11 | 5 |
striatum | 9.88e-11 | 5 |
ventral part of telencephalon | 9.88e-11 | 5 |
future corpus striatum | 9.88e-11 | 5 |
central nervous system | 1.47e-08 | 73 |
nervous system | 2.47e-08 | 75 |
basal ganglion | 4.66e-07 | 8 |
nuclear complex of neuraxis | 4.66e-07 | 8 |
aggregate regional part of brain | 4.66e-07 | 8 |
collection of basal ganglia | 4.66e-07 | 8 |
cerebral subcortex | 4.66e-07 | 8 |