UBERON:0002405: Difference between revisions
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(Created page with "{{UBERON
|id=UBERON:0002405
|name=immune system
|namespace=
|def="Anatomical system that protects the body from foreign substances, cells, and tissues by producing the imm...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from=UBERON:0002416;;UBERON:0002423;;UBERON:0004456 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002405 | |||
|is_a=UBERON:0000467 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=immune system | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset=uberon_slim;;vertebrate_core | |||
|synonym= | |||
|union_of= | |||
|xref=AAO:0011003;;BILA:0000104;;FMA:9825;;GAID:328;;MA:0002711;;MESH:A.15.382;;ncithesaurus:Immune_System;;OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA;;SCTID:362590003;;TAO:0001159;;VHOG:0001247;;XAO:0003152;;ZFA:0001159 | |||
}} | }} | ||
Latest revision as of 17:31, 12 September 2014
| Name: | immune system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system] | ||
| Xrefs: |
| ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| disjoint_from: | UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
Children
| disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001033 (gustatory system),UBERON:0001434 (skeletal system),UBERON:0002204 (musculoskeletal system),UBERON:0002294 (biliary system),UBERON:0002330 (exocrine system),UBERON:0002390 (hematopoietic system) |
|---|---|
| part of: | CL:0000738 (leukocyte),UBERON:0002106 (spleen),UBERON:0002370 (thymus),UBERON:0002371 (bone marrow),UBERON:0002465 (lymphoid system),UBERON:0005057 (immune organ),UBERON:0005562 (thymus primordium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10077-102A5 (lymph node, adult, donor1)
- 10095-102C5
- 10097-102C7
- 10192-103E3 (bone marrow, adult)
- 10261-104C9
... further results Mouse (Mus musculus)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10077-102A5 (lymph node, adult, donor1)
- 10095-102C5
- 10097-102C7
- 10192-103E3 (bone marrow, adult)
- 10261-104C9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002405 (immune system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.86e-103 | FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_f04738958b767004a48281a58084edb6 | p@chr1:161187824..161187847, + |
| 7.86e-103 | FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_f04738958b767004a48281a58084edb6 | p@chr1:161187824..161187847, + |
| 3.11e-98 | FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_8b6cc8bb6b0fb209f437c48b99bbca70 | p@chr16:50313426..50313459, + |
| 3.11e-98 | FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_8b6cc8bb6b0fb209f437c48b99bbca70 | p@chr16:50313426..50313459, + |
| 1.87e-96 | FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_7836a647c165b721cc84c67cda4e8d98 | p@chr1:161188746..161188758, + |
| 1.87e-96 | FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_7836a647c165b721cc84c67cda4e8d98 | p@chr1:161188746..161188758, + |
| 2.36e-95 | FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_0ef797085235fd62fb1badf4458d0cbc | p@chr1:161188661..161188679, + |
| 2.36e-95 | FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_0ef797085235fd62fb1badf4458d0cbc | p@chr1:161188661..161188679, + |
| 2.31e-92 | FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_0b3ccdfa43be8c928a79abf0389931b9 | p7@FNIP2 |
| 2.31e-92 | FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_0b3ccdfa43be8c928a79abf0389931b9 | p7@FNIP2 |
| 8.32e-92 | FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_bc4206de4156c3d81448bc077462a555 | p5@IFI30 |
| 8.32e-92 | FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_bc4206de4156c3d81448bc077462a555 | p5@IFI30 |
| 6.63e-91 | FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_b4341d1965f5ed3e5ace3de425ca6fb6 | p@chr4:185314151..185314178, - |
| 6.63e-91 | FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_b4341d1965f5ed3e5ace3de425ca6fb6 | p@chr4:185314151..185314178, - |
| 2.23e-90 | FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_19c710b896653b31c64e51ef20dd0e7e | p@chr7:77050554..77050601, + |
| 2.23e-90 | FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_19c710b896653b31c64e51ef20dd0e7e | p@chr7:77050554..77050601, + |
| 4.39e-90 | FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_c80550db7e9536f2f8dbba0bd975c5ea | p7@EMILIN2 |
| 4.39e-90 | FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_c80550db7e9536f2f8dbba0bd975c5ea | p7@EMILIN2 |
| 5.36e-89 | FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_49d141d286a8eaaada8ee37e3a972ac8 | p@chr17:7482481..7482508, - |
| 5.36e-89 | FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_49d141d286a8eaaada8ee37e3a972ac8 | p@chr17:7482481..7482508, - |
| 2.0e-88 | FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_cd05e8ab035b92ca916ea4a06a614227 | p@chr4:185314125..185314143, - |
| 2.0e-88 | FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_cd05e8ab035b92ca916ea4a06a614227 | p@chr4:185314125..185314143, - |
| 2.39e-88 | FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_d3f7c7998a2647a4d58e5d077d972d57 | p8@CHI3L2 |
| 2.39e-88 | FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_d3f7c7998a2647a4d58e5d077d972d57 | p8@CHI3L2 |
| 2.46e-88 | FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_5a15a643cc970050936b5c7778e72e1a | p7@IFI30 |
| 2.46e-88 | FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_5a15a643cc970050936b5c7778e72e1a | p7@IFI30 |
| 1.07e-87 | FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_544c8dc3a59df3c55fbc02f17fac0812 | p@chr4:185314188..185314207, - |
| 1.07e-87 | FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_544c8dc3a59df3c55fbc02f17fac0812 | p@chr4:185314188..185314207, - |
| 3.43e-87 | FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_b3084553dc9447291fb089ea04ae9f2f | p@chr1:161188686..161188721, + |
| 3.43e-87 | FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_b3084553dc9447291fb089ea04ae9f2f | p@chr1:161188686..161188721, + |
| 1.51e-86 | FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_dae8c6e948f53c3feba9c00344599c74 | p@chr4:3387239..3387324, - |
| 1.51e-86 | FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_dae8c6e948f53c3feba9c00344599c74 | p@chr4:3387239..3387324, - |
| 4.76e-86 | FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_8692f22a0f543448b5aa0fcf02a87029 | p@chr7:2832730..2832791, + |
| 4.76e-86 | FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_8692f22a0f543448b5aa0fcf02a87029 | p@chr7:2832730..2832791, + |
| 1.19e-85 | FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_ab22e60957938afa71f2286c95f0112f | p15@MGAT1 |
| 1.19e-85 | FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_ab22e60957938afa71f2286c95f0112f | p15@MGAT1 |
| 1.83e-85 | FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_b5232bfda69abea263d28b323c5325b6 | p@chr1:161188826..161188842, + |
| 1.83e-85 | FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_b5232bfda69abea263d28b323c5325b6 | p@chr1:161188826..161188842, + |
| 1.01e-84 | FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_faffad48dd6298a7eee2b1b373f8348e | p@chr17:7483714..7483726, + |
| 1.01e-84 | FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_faffad48dd6298a7eee2b1b373f8348e | p@chr17:7483714..7483726, + |
| 1.19e-84 | FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_0e749e31020a5e629ccccefeeed78106 | p1@AK126179 |
| 1.19e-84 | FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_0e749e31020a5e629ccccefeeed78106 | p1@AK126179 |
| 7.07e-84 | FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_cee7eb3cb5ff959a2bd04178b117be78 | p@chr2:145429606..145429658, + |
| 7.07e-84 | FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_cee7eb3cb5ff959a2bd04178b117be78 | p@chr2:145429606..145429658, + |
| 9.51e-84 | FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_099e9bd6b654d9ea3299245488fcbb56 | p@chr2:119726719..119726744, + |
| 9.51e-84 | FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_099e9bd6b654d9ea3299245488fcbb56 | p@chr2:119726719..119726744, + |
| 9.61e-84 | FFCP PHASE2:Hg19::chr20:1517945..1517963,-#_4516a0358dafd8885e2f9a73b9119cc1 | p@chr20:1517945..1517963, - |
| 9.61e-84 | FFCP PHASE1:Hg19::chr20:1517945..1517963,-#_4516a0358dafd8885e2f9a73b9119cc1 | p@chr20:1517945..1517963, - |
| 1.61e-83 | FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_5adaf159dd23255a2817a54410d48467 | p@chr19:18283959..18283993, + |
| 1.61e-83 | FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_5adaf159dd23255a2817a54410d48467 | p@chr19:18283959..18283993, + |
| 3.47e-83 | FFCP PHASE2:Hg19::chr1:155959853..155959881,-#_d1b9661981898852df6a6d6eca8d6378 | p11@ARHGEF2 |
| 3.47e-83 | FFCP PHASE1:Hg19::chr1:155959853..155959881,-#_d1b9661981898852df6a6d6eca8d6378 | p11@ARHGEF2 |
| 3.54e-83 | FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_b5d8b68fd02058b8fc421b80a92a08b1 | p2@CD300C |
| 3.54e-83 | FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_b5d8b68fd02058b8fc421b80a92a08b1 | p2@CD300C |
| 3.78e-83 | FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_ad00d4dadaadd6554b30287eb771a80c | p@chr19:18286116..18286156, + |
| 3.78e-83 | FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_ad00d4dadaadd6554b30287eb771a80c | p@chr19:18286116..18286156, + |
| 1.52e-82 | FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_4d5cc917ce0caa6716dac1b1ed96debc | p1@CYP1B1-AS1 |
| 1.52e-82 | FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_4d5cc917ce0caa6716dac1b1ed96debc | p1@CYP1B1-AS1 |
| 3.08e-82 | FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_3cfd9460878e6180522de19b1ec6fc7a | p@chr15:65174546..65174583, - |
| 3.08e-82 | FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_3cfd9460878e6180522de19b1ec6fc7a | p@chr15:65174546..65174583, - |
| 9.01e-82 | FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_afe025c09a8e1ce988da798a0ee3def2 | p7@RNF13 |
| 9.01e-82 | FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_afe025c09a8e1ce988da798a0ee3def2 | p7@RNF13 |
| 1.25e-81 | FFCP PHASE2:Hg19::chr1:161187774..161187799,+#_8ba9e833a152f8f627eff2997a4dea8c | p@chr1:161187774..161187799, + |
| 1.25e-81 | FFCP PHASE1:Hg19::chr1:161187774..161187799,+#_8ba9e833a152f8f627eff2997a4dea8c | p@chr1:161187774..161187799, + |
| 1.36e-81 | FFCP PHASE2:Hg19::chr9:137264970..137264982,+#_0e894dc13f37ab6a6bf1b1ef84071358 | p@chr9:137264970..137264982, + |
| 1.36e-81 | FFCP PHASE1:Hg19::chr9:137264970..137264982,+#_0e894dc13f37ab6a6bf1b1ef84071358 | p@chr9:137264970..137264982, + |
| 1.38e-81 | FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_8c8214494abd0d28be834978a94f4a8c | p@chr19:52299474..52299504, - |
| 1.38e-81 | FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_8c8214494abd0d28be834978a94f4a8c | p@chr19:52299474..52299504, - |
| 1.88e-81 | FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_7e5166eb8c5073e8d5bf0fd2d53ff339 | p1@ENST00000425320 |
| 1.88e-81 | FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_7e5166eb8c5073e8d5bf0fd2d53ff339 | p1@ENST00000425320 |
| 4.02e-81 | FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_850a313d089f85e817a10105a23bb981 | p@chr19:18288064..18288080, + |
| 4.02e-81 | FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_850a313d089f85e817a10105a23bb981 | p@chr19:18288064..18288080, + |
| 1.01e-80 | FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_593cd7f34197bfcbfd65d679d1b79539 | p@chr10:73648356..73648408, - |
| 1.01e-80 | FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_593cd7f34197bfcbfd65d679d1b79539 | p@chr10:73648356..73648408, - |
| 1.48e-80 | FFCP PHASE2:Hg19::chr6:163836917..163836950,-#_f6983995631eaaeb81557084165a51ee | p@chr6:163836917..163836950, - |
| 1.48e-80 | FFCP PHASE1:Hg19::chr6:163836917..163836950,-#_f6983995631eaaeb81557084165a51ee | p@chr6:163836917..163836950, - |
| 2.43e-80 | FFCP PHASE2:Hg19::chr9:19230548..19230598,+#_d05383d5265ac9ba9529da54a04619a4 | p@chr9:19230548..19230598, + |
| 2.43e-80 | FFCP PHASE1:Hg19::chr9:19230548..19230598,+#_d05383d5265ac9ba9529da54a04619a4 | p@chr9:19230548..19230598, + |
| 8.18e-80 | FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_a0b967a60d545f0c3d15ca9530403e8d | p2@ZEB2-AS1 |
| 8.18e-80 | FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_a0b967a60d545f0c3d15ca9530403e8d | p2@ZEB2-AS1 |
| 8.22e-80 | FFCP PHASE2:Hg19::chr12:51402938..51402955,-#_57db0174e9a3e57db5e7b344a15a2490 | p7@SLC11A2 |
| 8.22e-80 | FFCP PHASE1:Hg19::chr12:51402938..51402955,-#_57db0174e9a3e57db5e7b344a15a2490 | p7@SLC11A2 |
| 8.44e-80 | FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_67c99957d0161a874636e5406b3eec99 | p@chrX:37664331..37664352, + |
| 8.44e-80 | FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_67c99957d0161a874636e5406b3eec99 | p@chrX:37664331..37664352, + |
| 1.12e-79 | FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_e75226b7dc536fda2f7dd645fc9f0ace | p@chrX:153286067..153286101, - |
| 1.12e-79 | FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_e75226b7dc536fda2f7dd645fc9f0ace | p@chrX:153286067..153286101, - |
| 1.21e-79 | FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_a23a22e809e8a13198857ef35644b77b | p@chr8:116588888..116588904, + |
| 1.21e-79 | FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_a23a22e809e8a13198857ef35644b77b | p@chr8:116588888..116588904, + |
| 1.25e-79 | FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_d0d77a4699850320096a1755e22160c3 | p4@RNF115 |
| 1.25e-79 | FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_d0d77a4699850320096a1755e22160c3 | p4@RNF115 |
| 1.7e-79 | FFCP PHASE2:Hg19::chr19:18285973..18285996,+#_ae12c45630b43e16de9d291361c79c59 | p@chr19:18285973..18285996, + |
| 1.7e-79 | FFCP PHASE1:Hg19::chr19:18285973..18285996,+#_ae12c45630b43e16de9d291361c79c59 | p@chr19:18285973..18285996, + |
| 2.0e-79 | FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_76db8c75c2458cc9f980c3a6d8ff31d9 | p@chr2:129283966..129283970, + |
| 2.0e-79 | FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_76db8c75c2458cc9f980c3a6d8ff31d9 | p@chr2:129283966..129283970, + |
| 2.34e-79 | FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_3f2e492256b15ff9f0d20d33b1265408 | p8@CTSS |
| 2.34e-79 | FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_3f2e492256b15ff9f0d20d33b1265408 | p8@CTSS |
| 2.51e-79 | FFCP PHASE2:Hg19::chr17:4643027..4643036,-#_a995b8bf3c77f369304ec246cffdf37c | p10@CXCL16 |
| 2.51e-79 | FFCP PHASE1:Hg19::chr17:4643027..4643036,-#_a995b8bf3c77f369304ec246cffdf37c | p10@CXCL16 |
| 3.43e-79 | FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_60a1b9c0b92ee80d3f1334e0019ba680 | p@chr1:26602990..26603008, + |
| 3.43e-79 | FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_60a1b9c0b92ee80d3f1334e0019ba680 | p@chr1:26602990..26603008, + |
