FFCP PHASE1:Hg19::chr19:40228657..40228674,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:40228657..40228674,- to FFCP PHASE1:Hg19::chr19:40228657..40228674,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1178 | |EntrezGene=1178 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2014 | |HGNC=2014 | ||
|TSSclassifier=strong | |||
|UniProt=Q05315,C5HZ13 | |UniProt=Q05315,C5HZ13 | ||
|association_with_transcript=0bp_to_ENST00000221804,NM_001828,uc002omh.2_5end | |||
|cluster_id=chr19:40228657..40228674,- | |||
|coexpression_cluster_id=C3788 | |||
|description=CAGE_peak_2_at_CLC_5end | |||
|id=chr19:40228657..40228674,- | |||
|ontology_enrichment_celltype=CL:0000037!4.88e-30!172;CL:0000566!4.88e-30!172;CL:0000988!5.95e-28!182;CL:0000738!1.88e-26!140;CL:0002032!2.28e-26!165;CL:0000837!2.28e-26!165;CL:0000766!6.07e-24!76;CL:0002057!2.23e-23!42;CL:0000763!3.41e-23!112;CL:0000049!3.41e-23!112;CL:0002087!2.48e-22!119;CL:0000860!3.80e-21!45;CL:0002031!1.02e-19!124;CL:0002194!5.09e-18!63;CL:0000576!5.09e-18!63;CL:0000040!5.09e-18!63;CL:0000559!5.09e-18!63;CL:0000839!7.01e-18!70;CL:0002009!3.89e-17!65;CL:0000557!8.46e-15!71;CL:0000094!3.03e-13!8;CL:0000081!4.89e-09!11;CL:0002393!5.07e-07!9;CL:0002397!5.07e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000094;1.74e-29;8!CL:0000081;4.73e-21;11!CL:0000775;1.81e-12;3!CL:0000767;6.74e-12;3!CL:0000226;1.58e-11;3!CL:0000842;1.58e-11;3!CL:0000764;4.83e-09;2!CL:0000558;4.83e-09;2!CL:0000771;1.36e-08;2!CL:0000763;9.39e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,1.81e-29,8;CL:0000081,4.86e-21,11;CL:0000037,3.37e-17,168;CL:0000763,4.41e-17,108;CL:0000049,4.41e-17,108;CL:0000766,5.64e-16,72;CL:0000988,6.65e-16,177;CL:0002032,2.37e-13,161;CL:0000837,2.37e-13,161;CL:0000738,4.64e-13,136;CL:0000775,1.81e-12,3;CL:0000767,7.13e-12,3;CL:0000226,1.53e-11,3;CL:0000842,1.53e-11,3;CL:0000764,4.83e-09,2;CL:0000765,4.83e-09,2;CL:0000050,4.83e-09,2;CL:0000038,4.83e-09,2;CL:0000558,4.83e-09,2;CL:0000547,4.83e-09,2;CL:0000549,4.83e-09,2;CL:0000550,4.83e-09,2;CL:0000552,4.83e-09,2;CL:0000771,1.34e-08,2;CL:0000839,4.36e-08,66;CL:0002087,6.20e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000049;8.24e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.68e-27!102;UBERON:0003061!2.68e-27!102;UBERON:0002193!2.28e-24!112;UBERON:0000178!2.12e-16!15;UBERON:0000179!2.12e-16!15;UBERON:0000463!2.12e-16!15;UBERON:0002371!5.07e-13!80;UBERON:0001474!2.13e-11!86;UBERON:0002405!9.34e-11!115;UBERON:0004765!1.57e-09!101;UBERON:0001434!1.57e-09!101;UBERON:0003081!1.95e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.90e-34;15!UBERON:0000179;4.90e-34;15!UBERON:0000463;4.90e-34;15!UBERON:0002390;1.20e-21;32!UBERON:0002193;1.16e-10;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.98e-34,15;UBERON:0000179,4.98e-34,15;UBERON:0000463,4.98e-34,15;UBERON:0002390,4.20e-21,98;UBERON:0003061,4.20e-21,98;UBERON:0002193,1.59e-18,108;UBERON:0003081,7.58e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,313.117964371728,14.9693465257913,4.02521920621798,0,0,0,0.0774672005803016,0.426507697462265,3.52320527201817,0,0.200544447470142,0,0,1.29557466407592,0,0.872389432677388,0,0,1.39457422143411,0,0.309706370895104,0.575384784644301,0,0.709446689665756,1.03423704220986,0,2.70852973188684,0.752969358170419,0.272906150057846,0.224723484445085,3.97909060082173,0.320929027076094,0.639337125799041,0.989553900560148,0.199463657621632,0.852449501065388,1.45104619314292,0,0,1.00499466102697,0,0.868755378820466,1.21079900526674,0.736555271975129,0,2.11255286311942,1.70083439972035,0.628975936525128,0.898629049171961,0.450530678524519,0.48217676009124,4.56020389985998,0.79566670879636,0.730656615058536,0,3.27683166757279,0.889509253863555,0.853460445133014,0,1.72425731986345,1.98313461835459,0.954053754535364,0,0,0,11.8954195721123,1.68152568894461,66.1094052785443,0.196709770113833,0.393010762749165,0,0,0.651844533267181,0,0,0.445641827540694,0.589211814949674,0,0,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0,0,0.566546713487831,0.766440987203842,0,0,0,0.651083453856419,0,0.903450714466637,0,0,1.65744076430812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.523916301990851,0,0,4.21911611751088,2.96020553408754,0.797747763113191,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7670626154095,54.2892369807656,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,108.606018472341,385.918282373192,38.1262272361153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9624326269493,19.6299922744941,6.61710858381355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,263.769631605059,362.610970571537,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,76.6245889940576,81.8161811642342,190.26216051617,106.013140078716,83.0951791634112,25.290459136516,41.5824206673348,115.796275738963,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0.783399478865116,7.51903431270201,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0.33307196799782,0,0,0,0,0.445773537109913,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,3.37486652257111,0,0,0,0,0,0,19.1586473877552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0.217294743844016,0,0,0,0,8.47693384533134,50.3621396157474,0,0,0,0,19.8670723725473,0,0,0,0,1.99052386215701,0,3.05515072466813,0,0.123563938946503,0,0.134802265961354,0,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.0607495566580247,0,0,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0,0,18.550964447711,0,0,0,0,0.854299300541557,0.78602152549833,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,37.0220302038669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0.115233987555779,0,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0.467878926924211,0,0.118920090777569,0,0,0,0.540219106755613,0.437119121007915,0,0,0,0,0,0.8453114551668,0,0.469919589899268,8.1861517726443,0,0,0,0,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0.203977659483963,0.534434810531121,0,0.250707539292375,0,0,0,0,1.49263787330687,0.714193294391221,0.387533459016037,10.056103715929,0,0,0,0.217716747896961,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,313.117964371728,14.9693465257913,4.02521920621798,0,0,0,0.0774672005803016,0.426507697462265,3.52320527201817,0,0.200544447470142,0,0,1.29557466407592,0,0.872389432677388,0,0,1.39457422143411,0,0.309706370895104,0.575384784644301,0,0.709446689665756,1.03423704220986,0,2.70852973188684,0.752969358170419,0.272906150057846,0.224723484445085,3.97909060082173,0.320929027076094,0.639337125799041,0.989553900560148,0.199463657621632,0.852449501065388,1.45104619314292,0,0,1.00499466102697,0,0.868755378820466,1.21079900526674,0.736555271975129,0,2.11255286311942,1.70083439972035,0.628975936525128,0.898629049171961,0.450530678524519,0.48217676009124,4.56020389985998,0.79566670879636,0.730656615058536,0,3.27683166757279,0.889509253863555,0.853460445133014,0,1.72425731986345,1.98313461835459,0.954053754535364,0,0,0,11.8954195721123,1.68152568894461,66.1094052785443,0.196709770113833,0.393010762749165,0,0,0.651844533267181,0,0,0.445641827540694,0.589211814949674,0,0,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0,0,0.566546713487831,0.766440987203842,0,0,0,0.651083453856419,0,0.903450714466637,0,0,1.65744076430812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.523916301990851,0,0,4.21911611751088,2.96020553408754,0.797747763113191,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7670626154095,54.2892369807656,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,108.606018472341,385.918282373192,38.1262272361153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9624326269493,19.6299922744941,6.61710858381355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,263.769631605059,362.610970571537,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,76.6245889940576,81.8161811642342,190.26216051617,106.013140078716,83.0951791634112,25.290459136516,41.5824206673348,115.796275738963,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0.783399478865116,7.51903431270201,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0.33307196799782,0,0,0,0,0.445773537109913,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,3.37486652257111,0,0,0,0,0,0,19.1586473877552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.0897576444097721,0.217294743844016,0,0,0,0,8.47693384533134,50.3621396157474,0,0,0,0,19.8670723725473,0,0,0,0,1.99052386215701,0,3.05515072466813,0,0.123563938946503,0,0.134802265961354,0,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.0607495566580247,0,0,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0.246277562248017,0,0,0,18.550964447711,0,0,0,0,0.854299300541557,0.78602152549833,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,37.0220302038669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0.115233987555779,0,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0.467878926924211,0,0.118920090777569,0,0,0,0.540219106755613,0.437119121007915,0,0,0,0,0,0.8453114551668,0,0.469919589899268,8.1861517726443,0,0,0,0,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0.203977659483963,0.534434810531121,0,0.250707539292375,0,0,0,0,1.49263787330687,0.714193294391221,0.387533459016037,10.056103715929,0,0,0,0.217716747896961,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@CLC | |||
}} | }} |
Latest revision as of 00:17, 18 September 2015
Short description: | p2@CLC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CLC_5end |
Coexpression cluster: | C3788_Reticulocytes_Neutrophils_Basophils_Whole_CD34_Eosinophils_chronic |
Association with transcript: | 0bp_to_ENST00000221804, NM_001828, uc002omh.2_5end |
EntrezGene: | CLC |
HGNC: | 2014 |
UniProt: | Q05315C5HZ13 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 1.81e-29 | 8 |
blood cell | 4.86e-21 | 11 |
hematopoietic stem cell | 3.37e-17 | 168 |
myeloid cell | 4.41e-17 | 108 |
common myeloid progenitor | 4.41e-17 | 108 |
myeloid leukocyte | 5.64e-16 | 72 |
hematopoietic cell | 6.65e-16 | 177 |
hematopoietic oligopotent progenitor cell | 2.37e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.37e-13 | 161 |
leukocyte | 4.64e-13 | 136 |
neutrophil | 1.81e-12 | 3 |
basophil | 7.13e-12 | 3 |
single nucleate cell | 1.53e-11 | 3 |
mononuclear cell | 1.53e-11 | 3 |
erythroid lineage cell | 4.83e-09 | 2 |
erythroblast | 4.83e-09 | 2 |
megakaryocyte-erythroid progenitor cell | 4.83e-09 | 2 |
erythroid progenitor cell | 4.83e-09 | 2 |
reticulocyte | 4.83e-09 | 2 |
proerythroblast | 4.83e-09 | 2 |
basophilic erythroblast | 4.83e-09 | 2 |
polychromatophilic erythroblast | 4.83e-09 | 2 |
orthochromatic erythroblast | 4.83e-09 | 2 |
eosinophil | 1.34e-08 | 2 |
myeloid lineage restricted progenitor cell | 4.36e-08 | 66 |
nongranular leukocyte | 6.20e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
blood | 4.98e-34 | 15 |
haemolymphatic fluid | 4.98e-34 | 15 |
organism substance | 4.98e-34 | 15 |
hematopoietic system | 4.20e-21 | 98 |
blood island | 4.20e-21 | 98 |
hemolymphoid system | 1.59e-18 | 108 |
lateral plate mesoderm | 7.58e-07 | 203 |