FFCP PHASE1:Hg19::chr22:19419409..19419469,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:19419409..19419469,- to FFCP PHASE1:Hg19::chr22:19419409..19419469,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7290 | |EntrezGene=7290 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4916 | |HGNC=4916 | ||
|TSSclassifier=strong | |||
|UniProt=P54198 | |UniProt=P54198 | ||
|association_with_transcript=-153bp_to_ENST00000263208_5end | |||
|cluster_id=chr22:19419409..19419469,- | |||
|description=CAGE_peak_3_at_HIRA_5end | |||
|id=chr22:19419409..19419469,- | |||
|ontology_enrichment_celltype=CL:0002321!2.53e-07!248;CL:0000220!3.91e-07!246;CL:0000055!8.66e-07!180 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.42e-09!94;UBERON:0001016!3.42e-09!94;UBERON:0005743!4.67e-09!86;UBERON:0001017!2.15e-08!82;UBERON:0003075!3.80e-08!86;UBERON:0007284!3.80e-08!86;UBERON:0002346!5.82e-08!90;UBERON:0001869!5.66e-07!32;UBERON:0000119!6.86e-07!312;UBERON:0002616!7.89e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;9.24e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.30e-11,81;UBERON:0001016,6.98e-11,89;UBERON:0000955,8.22e-08,68;UBERON:0006238,8.22e-08,68;UBERON:0001869,9.67e-08,32;UBERON:0000119,1.57e-07,309;UBERON:0003075,3.43e-07,82;UBERON:0007284,3.43e-07,82;UBERON:0002346,6.13e-07,86;UBERON:0010314,6.80e-07,132;UBERON:0001893,6.86e-07,34;UBERON:0000483,9.25e-07,306;UBERON:0010371,9.37e-07,104 | |||
|phase1_expression=1.45342703416445,2.14100523890983,1.69145284915165,1.0007329835313,2.23480547213644,3.48935409640147,2.53299878168311,1.26343974685366,0.783556884599516,1.22866968250754,0,0.218441372130172,0.527533956456907,0.123766352960047,0.331397375727916,0,0,0.730310090387373,1.46379839637152,2.95490539384291,2.44800829493104,2.82109249330279,0.286235987131057,1.09499540058307,1.12988375635323,0.61130724598361,0.738905305049512,0.157421562627358,0.393364276848904,0.383829398097213,0.464448369948228,0,0.6024118375565,1.47901604066715,0.387336002901508,1.27952309238679,0.293600439334847,0,0.802177789880567,0.217010870715852,1.11957737119962,2.26725566213286,2.06060454107349,0.290796477559129,0.377875943688809,0,0.464858073811369,0.411167888021826,0.309706370895104,0.28769239232215,0.256160706529101,0.47296445977717,0.344745680736619,0,0,0.188242339542605,0.272906150057846,0.224723484445085,0,0,0,0.659702600373432,0.398927315243264,0.426224750532694,0.580418477257168,0,0,0.251248665256743,0,0,0,0.368277635987565,0,0.211255286311942,0.425208599930087,0.628975936525128,0.336985893439485,0.600707571366025,0.48217676009124,0.285012743741249,0.19891667719909,0.182664153764634,0,0,0,0,0.400395987036012,0,0,0,0.569212969109448,1.17447437874188,0.382273228125229,0,1.12101712596307,0.263384084775077,0,0,0,0,0,0.946895611469467,0,0.445641827540694,0,0.221533894583621,0.270803863765016,0,0.260118695119756,0.328875809207352,0.276350017785848,0.869409257205157,0,0.267540828089713,1.04535523804977,0.113309342697566,0,0.34362744548263,0,0.637130828648193,0,0,0,0.383959833463255,0,0,0,0.201606743224732,0.267440195783507,0.724122019413995,4.87613732627923,1.34140171940727,0.767175371061182,0.361439152384566,2.00535164254356,0.289693037921647,0.795285947051099,0,1.98523116044542,1.99556457716308,1.40535657109002,2.35762335895883,0.364295288292542,1.11235332835329,0.649094787309367,1.74129737299267,2.79211717089617,0.238490624305342,0.571994910780128,0,0,0.860234595106124,0.347140501607594,1.13061588384802,1.25849830862972,0.275118041940067,0.417989933073621,0.775250277507987,2.13459757612026,0.66944122552934,1.20848795132744,0,0.24406205754817,0,0,0.714397826272638,1.57170560838319,0.563057402416611,1.53316637465883,1.89853131913626,0.183201743930407,1.31780417436063,3.87780264148325,1.3082821564276,0.993943903390637,1.13967460498122,1.85372853138506,0.860509862246441,0.709336764396714,0.560677600142307,1.06748995729705,0.49333509683432,1.24484414159907,0.67355336034844,0.163461903113459,2.57307626996383,1.72852777344,0.70296429550139,2.18512053781224,0,0.448346041655403,0.939475989150119,0.971237666208789,1.12360645361799,0.61246251376468,0.491337269247072,0.413303124703062,0,1.23633464639278,1.82032272387605,0.718618141816238,0,0.500474079487857,0.831192346452549,0,0.919463387397059,0.600952235626387,1.13432183160021,0.717558542755448,0.427114777637135,1.27159140695737,0,0.824420233907511,0.772921620136887,1.48893485065272,0.506328996723799,0.68205903612839,0.757301322732344,0.828449087780694,0.80823028409406,0.710019185033229,0.604512589365842,0.847802961552438,0.386521706326594,0.272746120590835,0.286804595389004,0.731842236777572,1.32529768321485,0.929551542956147,1.34759371519982,1.00928340350251,0.72995471815166,3.12899064659632,1.28648187638577,1.38134921352481,1.39310378409594,0.721879481669586,0.473227200159376,0.337169380156203,0.241011029883482,0.55146986366197,0,0.949082476444386,0.269662616320329,0.196221465125346,0,1.4763109092493,0,2.057870056657,1.47008711385542,2.53510069643662,0,0,0.441463099414651,1.10689594688802,1.71567810298526,1.09750285408626,0,0.100528972411631,0.555530670951178,0.325808305310325,0,1.44331342025273,1.27523445472584,0.821860859650752,0.577465791044295,0.462985512576611,0.570762456703795,0.790204397959275,0,2.70838706696137,3.04205544681009,3.12125440806329,0.93733833986777,0.503946384596579,0.567100388969546,0.53735113621709,0.581267877027924,1.15014803749563,0,1.76096868026452,1.24396869324463,0.576479813667846,0.75745460055828,0.888970520090367,1.14596527667483,3.51652341630141,1.71072446022705,0.411309970813294,0,0.857479297891735,1.79409734952577,3.48768055066624,1.54010400223995,1.55126058909333,0,0.845302752556,0.797814349754612,0,0.514414748524284,0,0.532844358032199,0.714889968290738,2.17048642156577,0.823240336780769,0,0,1.58390374586686,2.1100756394171,0,1.69954085009497,1.2162378064119,1.00451418286425,0,0.239624855491583,0,0,0.434343920002738,0.61642896765115,0.716243852959582,0.224170287987055,0.985153801009636,0.862510299438069,1.02674429023799,1.77866236955724,3.90419561572865,1.54657762555539,1.00509759200609,1.27587750330633,1.49801404789436,2.99161459204025,1.24324654030811,0.36807447515742,1.00034104211935,1.08506009479894,1.24782516918484,0.535286966391485,0.630809660135739,0.35142424497814,1.20378439891088,0,0,2.65690239414175,0.184369168541703,0.434418072340414,4.11182430671755,1.02943027143257,0.413536052245775,0,0.213455115606889,0.606255142892519,0,0,1.4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| ||
|short_description=p3@HIRA | |||
}} | }} |
Latest revision as of 03:02, 19 September 2015
Short description: | p3@HIRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HIRA_5end |
Coexpression cluster: | NA |
Association with transcript: | -153bp_to_ENST00000263208_5end |
EntrezGene: | HIRA |
HGNC: | 4916 |
UniProt: | P54198 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.30e-11 | 81 |
nervous system | 6.98e-11 | 89 |
brain | 8.22e-08 | 68 |
future brain | 8.22e-08 | 68 |
cerebral hemisphere | 9.67e-08 | 32 |
cell layer | 1.57e-07 | 309 |
neural plate | 3.43e-07 | 82 |
presumptive neural plate | 3.43e-07 | 82 |
neurectoderm | 6.13e-07 | 86 |
structure with developmental contribution from neural crest | 6.80e-07 | 132 |
telencephalon | 6.86e-07 | 34 |
epithelium | 9.25e-07 | 306 |
ecto-epithelium | 9.37e-07 | 104 |