FFCP PHASE1:Hg19::chr5:179260110..179260123,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:179260110..179260123,+ to FFCP PHASE1:Hg19::chr5:179260110..179260123,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:179260110..179260123,+ | |||
|coexpression_cluster_id=C1276 | |||
|description=CAGE_peak_at_chr5:179260110..179260123,+ | |||
|id=chr5:179260110..179260123,+ | |||
|ontology_enrichment_celltype=CL:0000548!3.31e-14!679;CL:0000004!3.31e-14!679;CL:0000255!3.31e-14!679;CL:0000012!2.48e-13!682;CL:0000063!9.49e-11!578;CL:0000860!1.01e-10!45;CL:0002057!1.18e-10!42;CL:0000144!3.81e-10!625;CL:0002009!4.15e-10!65;CL:0002194!6.29e-10!63;CL:0000576!6.29e-10!63;CL:0000040!6.29e-10!63;CL:0000559!6.29e-10!63;CL:0000557!9.80e-10!71;CL:0002371!3.99e-09!591;CL:0000003!4.72e-09!722;CL:0000839!4.91e-09!70;CL:0000077!1.03e-07!19;CL:0000766!2.59e-07!76;CL:0000213!6.81e-07!57;CL:0000215!6.81e-07!57;CL:0000222!7.74e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.09e-19;33!CL:0002057;2.09e-19;33!CL:0000473;2.16e-17;39!CL:0000234;2.16e-17;39!CL:0000077;1.30e-11;19!CL:0000576;1.87e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.92e-16,48;CL:0000234,1.92e-16,48;CL:0000860,1.43e-14,42;CL:0002057,1.43e-14,42;CL:0002194,2.29e-12,59;CL:0000576,2.29e-12,59;CL:0000040,2.29e-12,59;CL:0000559,2.29e-12,59;CL:0002009,1.32e-11,61;CL:0000077,1.76e-11,19;CL:0000839,6.23e-10,66;CL:0000557,1.24e-09,67;CL:0000213,1.67e-09,58;CL:0000215,1.67e-09,58;CL:0000766,4.78e-09,72;CL:0000222,1.18e-08,121;CL:0000048,5.98e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;2.89e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!4.05e-11!448;UBERON:0004120!4.05e-11!448;UBERON:0006603!4.05e-11!448;UBERON:0002371!5.99e-09!80;UBERON:0002204!3.19e-08!167;UBERON:0003081!4.86e-08!216;UBERON:0001474!3.86e-07!86;UBERON:0004765!8.98e-07!101;UBERON:0001434!8.98e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.40e-08;9!UBERON:0001557;1.40e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,8.43e-11,315;UBERON:0004120,8.43e-11,315;UBERON:0006603,8.43e-11,315;UBERON:0002371,2.21e-09,76;UBERON:0001737,7.85e-09,9;UBERON:0002405,3.31e-08,93;UBERON:0001474,6.33e-08,82;UBERON:0002204,2.93e-07,167;UBERON:0003081,6.58e-07,203;UBERON:0004765,7.77e-07,90 | |||
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| ||
|short_description=p@chr5:179260110..179260123,+ | |||
}} | }} |
Latest revision as of 13:54, 30 July 2015
Short description: | p@chr5:179260110..179260123, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:179260110..179260123, + |
Coexpression cluster: | C1276_mesothelioma_CD14_leiomyoma_bile_Mesothelial_migratory_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.92e-16 | 48 |
phagocyte | 1.92e-16 | 48 |
classical monocyte | 1.43e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.43e-14 | 42 |
monopoietic cell | 2.29e-12 | 59 |
monocyte | 2.29e-12 | 59 |
monoblast | 2.29e-12 | 59 |
promonocyte | 2.29e-12 | 59 |
macrophage dendritic cell progenitor | 1.32e-11 | 61 |
mesothelial cell | 1.76e-11 | 19 |
myeloid lineage restricted progenitor cell | 6.23e-10 | 66 |
granulocyte monocyte progenitor cell | 1.24e-09 | 67 |
lining cell | 1.67e-09 | 58 |
barrier cell | 1.67e-09 | 58 |
myeloid leukocyte | 4.78e-09 | 72 |
mesodermal cell | 1.18e-08 | 121 |
multi fate stem cell | 5.98e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 8.43e-11 | 315 |
mesoderm-derived structure | 8.43e-11 | 315 |
presumptive mesoderm | 8.43e-11 | 315 |
bone marrow | 2.21e-09 | 76 |
larynx | 7.85e-09 | 9 |
immune system | 3.31e-08 | 93 |
bone element | 6.33e-08 | 82 |
musculoskeletal system | 2.93e-07 | 167 |
lateral plate mesoderm | 6.58e-07 | 203 |
skeletal element | 7.77e-07 | 90 |