FFCP PHASE1:Hg19::chr8:119964434..119964445,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:119964434..119964445,- to FFCP PHASE1:Hg19::chr8:119964434..119964445,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4982 | |EntrezGene=4982 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11909 | |HGNC=11909 | ||
|TSSclassifier=strong | |||
|UniProt=O00300 | |UniProt=O00300 | ||
|association_with_transcript=0bp_to_ENST00000297350_5end | |||
|cluster_id=chr8:119964434..119964445,- | |||
|description=CAGE_peak_6_at_TNFRSF11B_5end | |||
|id=chr8:119964434..119964445,- | |||
|ontology_enrichment_celltype=CL:0000057!8.50e-15!75;CL:0000055!3.28e-10!180;CL:0002620!1.21e-07!23;CL:0000499!7.17e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000499;1.05e-12;28!CL:0000135;1.23e-09;3!CL:0000388;1.23e-09;3!CL:0000197;7.40e-09;6!CL:0000098;7.40e-09;6!CL:0002167;7.40e-09;6!CL:0000153;2.26e-08;9!CL:0000447;2.26e-08;9!CL:0002556;9.15e-08;6!CL:0000327;7.22e-07;15!CL:1000306;8.86e-07;4!CL:0002547;8.86e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.48e-17,76;CL:0000499,2.05e-12,28;CL:0000135,8.45e-10,3;CL:0000388,8.45e-10,3;CL:0000197,7.32e-09,6;CL:0000098,7.32e-09,6;CL:0002167,7.32e-09,6;CL:0000153,3.04e-08,9;CL:0000447,3.04e-08,9;CL:0002556,5.40e-08,6;CL:1000306,4.33e-07,4;CL:0002547,4.33e-07,4;CL:0000327,8.92e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0005062;1.02e-11;4!UBERON:0007284;1.02e-11;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3307;6.89e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,5.09e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.12e-10!115;UBERON:0000475!4.54e-09!365;UBERON:0000477!1.28e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.23e-09;3!UBERON:0000043;1.23e-09;3!UBERON:0007845;1.23e-09;3!UBERON:0003978;2.61e-09;3!UBERON:0000946;2.61e-09;3!UBERON:0001758;9.15e-08;6!UBERON:0003672;9.15e-08;6!UBERON:0002133;6.89e-07;2!UBERON:0004797;8.86e-07;4!UBERON:0000415;8.86e-07;4!UBERON:0007240;8.86e-07;4!UBERON:0005742;8.86e-07;4!UBERON:0005734;8.86e-07;4!UBERON:0004664;8.86e-07;4!UBERON:0004663;8.86e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004797,2.43e-14,7;UBERON:0007846,8.45e-10,3;UBERON:0000043,8.45e-10,3;UBERON:0007845,8.45e-10,3;UBERON:0003978,3.23e-09,3;UBERON:0009751,3.23e-09,3;UBERON:0000946,3.23e-09,3;UBERON:0002523,3.23e-09,3;UBERON:0005983,3.23e-09,3;UBERON:0002165,3.23e-09,3;UBERON:0002062,3.23e-09,3;UBERON:0007280,3.23e-09,3;UBERON:0001758,5.40e-08,6;UBERON:0003672,5.40e-08,6;UBERON:0000415,4.33e-07,4;UBERON:0007240,4.33e-07,4;UBERON:0005742,4.33e-07,4;UBERON:0005734,4.33e-07,4;UBERON:0004664,4.33e-07,4;UBERON:0004663,4.33e-07,4;UBERON:0002133,7.47e-07,2;UBERON:0003129,7.55e-07,7 | |||
|phase1_expression=0.908391896352783,1.2846031433459,0.845726424575827,0,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0.495065411840187,0.331397375727916,0,0,0,0,0.123121058076788,0.408001382488506,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0.12786256184353,1.0843174571537,2.00535164254356,2.60723734129483,0.795285947051099,0.486634870302636,0,0.221729397462564,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97577561356255,0.506522046658319,1.98613771219828,1.43418310374407,1.77334191099179,1.12135520028461,0,0,0,0,0,0.151357427644931,0,0,0,0,0.149448680551801,0,0.161872944368132,0,0.61246251376468,0.491337269247072,1.65321249881225,4.75201142912821,5.43987244412825,0,0,0,0.125118519871964,1.6623846929051,1.75591048352335,1.5324389789951,2.55404700141215,0.113432183160021,0.179389635688862,1.92201649936711,1.69545520927649,0.300091096084402,1.54578793857658,1.8034837803194,1.30281799432113,0.168776332241266,0.68205903612839,0.504867548488229,2.39329736469978,2.42469085228218,0.355009592516614,0.10075209822764,0.508681776931463,0,0,0,0,0,0,0.10366105501537,0,0,1.56449532329816,0,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0.462985512576611,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.199945982364114,0,0,0,0.479249710983165,0,0,0.868687840005475,0,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,1.10422342547226,0,0,2.9115920614313,4.28229573113188,7.7274183366628,7.1456263145555,0,0,0,0,0,1.04260337361699,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,0.61384789315225,0.561320188866147,1.53766979106841,1.53512174720011,0.482561763430822,4.45254199334973,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,1.03333003348146,1.27463817604702,0.786746489756545,0.451199612907412,0.0770153371044148,0,0,0.316654886678627,0,0.170093705276516,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0.309123034943167,0.27470839445503,0.247528499761764,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0.929691098594572,0.62962469366128,0.6970372701606,0.924100740528266,0,0,0.37064843820784,0,0,0,0.38126038784765,0,0,0.318203247925937,0,0,0,0,0,0,0,0,1.21856744815642,0,0.409499734223957,0.424216295861138,0,0,0,3.06915619677634,0,0,0.608731130888112,0,0,0,0,0.7133421029625,0,6.75544432952525,4.93942339439853,0.379473173765715,0.349934720244983,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.844016498463076,0.445234820091624,0,0,5.57894367102995,0.276283915531148,0,0,0,1.86623752597084,0.179736702294654,0,0,0,0,4.44547960578548,0,0.278304294485554,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0.241192877250816,0,0.331737779793674,0.591095237907095,0.87754158861589,0,0,0.307801034015188,0.683652335082007,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.202203398942031,0,0,0,0,0,0.394584402849391,0,0,0.252746318513952,0,0,0.664653872707185,0,0,0,0.569219092059585,0,0.520679215005393,0,0,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0,0.240476460754601,1.49417096317547,0.599428828746391,0.288180834308212,0,0.171594997861965,0.14405479798815,0,0,0.543616824294456,0.104602846312333,1.22397861163586,0,0,0.273810757783986,0,5.58695073845944,0,1.39641200636127,1.3749625440701,3.58936512288407,0,1.28767814440971,0.669514372325618,0,6.48539790376326,0,0,0,0,0.393709926058995,0,0.795229689809303,0.544813624446302,0,0,0,0,0,0.121499113316049,0,0.709251365692784,0.367182116944987,0,0.537862017998534,0,0.714695326373367,0.662091970365432,0,0,0.864221491201268,0,0,0,0,1.81299346432201,0.146552233678082,0,0.129282956361551,0.26446520348538,0,0,0.320362237703084,0,0,0,0,0,0,0,0.5013797880454,0.306345576763462,1.31149052283922,0.785270481251171,0,0,1.502291168478,0,1.22021956690538,0.18628920882415,0,0.249960815924213,0,0,0,0,0,0,0,0,0.757612021100357,1.25783950876288,0,0.228840068396924,0.604923695052956,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0.181848659202559,0.429642228169954,0.464033759878494,0.398095888698616,0.400027764663154,0,0,1.26184898228651,0,0.214441591374926,0,1.13352962756136,0,0,0.179088841081487,0,1.09642024789354,0,0,0,0.256241518587947,0,0,0.829550616910385,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0.80057074828547,1.41070377476274,0,0.256916900385838,0,0.638535436228605,0,0,0.0691572524642179,0.484426936895553,0,0,0,0,0,0.381382095467167,0,1.98916222116275,0.150420656698515,0,0.781514011233092,0,0.49131575253029,0,0.0675375846183947,1.56215619722769,0.413373593002368,0.06341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| ||
|short_description=p6@TNFRSF11B | |||
}} | }} |
Latest revision as of 21:03, 15 September 2015
Short description: | p6@TNFRSF11B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TNFRSF11B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000297350_5end |
EntrezGene: | TNFRSF11B |
HGNC: | 11909 |
UniProt: | O00300 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.48e-17 | 76 |
stromal cell | 2.05e-12 | 28 |
fibrocyte | 8.45e-10 | 3 |
tendon cell | 8.45e-10 | 3 |
receptor cell | 7.32e-09 | 6 |
sensory epithelial cell | 7.32e-09 | 6 |
olfactory epithelial cell | 7.32e-09 | 6 |
GAG secreting cell | 3.04e-08 | 9 |
carbohydrate secreting cell | 3.04e-08 | 9 |
fibroblast of periodontium | 5.40e-08 | 6 |
fibroblast of tunica adventitia of artery | 4.33e-07 | 4 |
fibroblast of the aortic adventitia | 4.33e-07 | 4 |
extracellular matrix secreting cell | 8.92e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
blood vessel layer | 2.43e-14 | 7 |
dense regular connective tissue | 8.45e-10 | 3 |
tendon | 8.45e-10 | 3 |
regular connective tissue | 8.45e-10 | 3 |
valve | 3.23e-09 | 3 |
cardiac mesenchyme | 3.23e-09 | 3 |
cardial valve | 3.23e-09 | 3 |
tunica intima | 3.23e-09 | 3 |
heart layer | 3.23e-09 | 3 |
endocardium | 3.23e-09 | 3 |
endocardial cushion | 3.23e-09 | 3 |
presumptive endocardium | 3.23e-09 | 3 |
periodontium | 5.40e-08 | 6 |
dentition | 5.40e-08 | 6 |
artery wall | 4.33e-07 | 4 |
tunica adventitia of artery | 4.33e-07 | 4 |
adventitia | 4.33e-07 | 4 |
tunica adventitia of blood vessel | 4.33e-07 | 4 |
aorta tunica adventitia | 4.33e-07 | 4 |
aorta wall | 4.33e-07 | 4 |
atrioventricular valve | 7.47e-07 | 2 |
skull | 7.55e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
teratoma | 5.09e-07 | 2 |