FFCP PHASE1:Hg19::chr10:5530789..5530809,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:5530789..5530809,- | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_at_chr10:5530789..5530809,- | |description=CAGE_peak_at_chr10:5530789..5530809,- | ||
|id=chr10:5530789..5530809,- | |id=chr10:5530789..5530809,- | ||
|ontology_enrichment_celltype=CL:0002076!2.08e-14!43;CL:0000223!6.79e-13!59;CL:0002251!4.24e-12!21;CL:0000066!4.06e-11!254;CL:0000039!1.64e-07!7;CL:0000586!1.64e-07!7;CL:0002541!2.96e-07!3 | |ontology_enrichment_celltype=CL:0002076!2.08e-14!43;CL:0000223!6.79e-13!59;CL:0002251!4.24e-12!21;CL:0000066!4.06e-11!254;CL:0000039!1.64e-07!7;CL:0000586!1.64e-07!7;CL:0002541!2.96e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002537;8.59e-14;5!CL:0002563;3.35e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,1.07e-13,5;CL:0002563,2.96e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0003124;7.83e-09;1!UBERON:0006298;2.12e-08;1 | |||
|ontology_enrichment_disease=DOID:305!5.80e-18!106;DOID:0050687!1.89e-13!143;DOID:1749!3.27e-13!14;DOID:299!6.16e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:299;7.27e-10;25!DOID:1799;7.83e-09;1!DOID:10165;7.83e-09;1!DOID:1798;7.83e-09;1!DOID:0050619;2.12e-08;1!DOID:3151;2.12e-08;1!DOID:3111;2.12e-08;1!DOID:1357;2.12e-08;1!DOID:3149;2.12e-08;1!DOID:3603;2.12e-08;1!DOID:3119;2.27e-08;14!DOID:5093;3.35e-08;4!DOID:1612;3.35e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:299,7.77e-10,25;DOID:1799,6.03e-09,1;DOID:10165,6.03e-09,1;DOID:1798,6.03e-09,1;DOID:0050619,1.48e-08,1;DOID:1357,1.48e-08,1;DOID:3151,2.13e-08,1;DOID:3149,2.13e-08,1;DOID:3111,2.46e-08,1;DOID:3603,2.46e-08,1;DOID:5093,2.47e-08,4;DOID:1612,2.47e-08,4;DOID:3119,3.19e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.26e-25!169;UBERON:0000925!3.26e-25!169;UBERON:0006595!3.26e-25!169;UBERON:0001007!2.66e-21!155;UBERON:0001555!2.66e-21!155;UBERON:0007026!2.66e-21!155;UBERON:0004921!4.46e-18!129;UBERON:0004185!4.46e-18!129;UBERON:0000344!3.48e-16!12;UBERON:0005911!1.31e-15!82;UBERON:0000077!1.16e-14!130;UBERON:0001004!2.81e-14!72;UBERON:0000161!2.75e-11!35;UBERON:0003729!5.88e-10!5;UBERON:0001041!1.03e-09!98;UBERON:0000065!1.65e-09!53;UBERON:0003343!3.28e-08!4;UBERON:0004785!3.28e-08!4;UBERON:0005153!3.61e-08!37;UBERON:0000166!4.43e-08!21;UBERON:0004923!5.93e-08!57;UBERON:0002294!1.30e-07!7;UBERON:0001173!1.30e-07!7;UBERON:0004912!1.30e-07!7;UBERON:0004807!1.73e-07!28;UBERON:0000466!2.04e-07!126;UBERON:0005631!2.09e-07!14;UBERON:0000158!2.09e-07!14;UBERON:0003929!2.17e-07!54;UBERON:0000476!2.96e-07!3;UBERON:0000920!2.96e-07!3;UBERON:0000365!3.79e-07!5;UBERON:0000072!4.91e-07!46;UBERON:0000915!5.19e-07!52;UBERON:0000974!5.70e-07!10;UBERON:0000165!8.52e-07!28;UBERON:0000930!8.52e-07!28;UBERON:0005409!9.83e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.47e-14;33!UBERON:0005409;1.83e-14;22!UBERON:0000160;6.76e-14;17!UBERON:0005631;7.91e-12;10!UBERON:0000158;7.91e-12;10!UBERON:0000059;9.12e-11;11!UBERON:0000305;5.36e-10;7!UBERON:0001736;2.12e-08;1!UBERON:0001764;2.12e-08;1!UBERON:0004913;2.12e-08;1!UBERON:0003703;2.12e-08;1!UBERON:0001825;2.12e-08;1!UBERON:0001174;2.12e-08;1!UBERON:0004914;2.12e-08;1!UBERON:0001052;3.35e-08;4!UBERON:0001242;3.35e-08;4!UBERON:0001262;3.35e-08;4!UBERON:0004786;3.35e-08;4!UBERON:0004808;3.35e-08;4!UBERON:0001277;3.35e-08;4!UBERON:0001155;7.06e-08;9!UBERON:0000478;1.97e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.44e-14,17;UBERON:0005631,7.83e-13,14;UBERON:0000158,7.83e-13,14;UBERON:0005409,1.12e-12,25;UBERON:0000059,9.37e-11,11;UBERON:0000305,6.25e-10,7;UBERON:0004871,9.52e-09,8;UBERON:0001764,1.48e-08,1;UBERON:0001825,1.48e-08,1;UBERON:0001736,1.84e-08,1;UBERON:0006298,1.84e-08,1;UBERON:0001242,2.96e-08,4;UBERON:0001262,2.96e-08,4;UBERON:0004786,2.96e-08,4;UBERON:0004808,2.96e-08,4;UBERON:0001277,2.96e-08,4;UBERON:0004913,4.07e-08,1;UBERON:0003703,4.07e-08,1;UBERON:0001174,4.07e-08,1;UBERON:0004914,4.07e-08,1;UBERON:0001052,4.71e-08,4;UBERON:0001155,6.14e-08,9;UBERON:0000478,2.13e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0.121973706129595,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59884970106048,0,0,0,0.201057944823262,0.277765335475589,0,0,0,0,0,0,0,0,0.790204397959275,1.71697232418975,0,0,0,0,0.16798212819886,0,0.358234090811393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0.368323955743585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.564862804660675,0.43050537267123,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.86493381685228,1.18785872333055,2.15012491469462,0,0,0,0,0,0,0,0,0,0,0,0.359473404589307,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,2.86470537193757,0,0.724999575434793,0,1.5255219017566,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0,0,1.38338342632836,1.07709173291727,0.108647371922008,1.27600463892768,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,2.26164914294305,0,1.99052386215701,0.973033209536731,2.4441205797345,0.296521128680622,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,2.34661659281764,0.160317640503067,0,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0.0524545881349981,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0.106787412567695,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,1.57054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26787274015176,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.11796972334774,0.366857197043358,0.115525666150338,0,0,0,0,0,0,2.88097363929565,0,1.03499260351932,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,2.48366636455389,0,0,0,0,0,0.333694205676207,0.235479278551542,0,1.12108865325516,0,0,0,0,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0.22910686854405,0,0,0.223710863595585,1.3741032706134,0,0,0,0,0,0,0,0,10.5039856296233,0,0,0.617393264863557,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.357107877211315,0,0.481448200135009,0,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0.203977659483963,0,0.275684698604535,0,0,0,0,0,0,0,0.452122368852043,0.993195428733726,0,0,0,0.217716747896961,0,0.202056159043763,0.215166616178029,0.665320713092027,0.407016343054873,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0.121973706129595,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59884970106048,0,0,0,0.201057944823262,0.277765335475589,0,0,0,0,0,0,0,0,0.790204397959275,1.71697232418975,0,0,0,0,0.16798212819886,0,0.358234090811393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0.368323955743585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.564862804660675,0.43050537267123,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.86493381685228,1.18785872333055,2.15012491469462,0,0,0,0,0,0,0,0,0,0,0,0.359473404589307,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,2.86470537193757,0,0.724999575434793,0,1.5255219017566,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0,0,1.38338342632836,1.07709173291727,0.108647371922008,1.27600463892768,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,2.26164914294305,0,1.99052386215701,0.973033209536731,2.4441205797345,0.296521128680622,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,2.34661659281764,0.160317640503067,0,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0.0524545881349981,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0.106787412567695,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,1.57054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26787274015176,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.11796972334774,0.366857197043358,0.115525666150338,0,0,0,0,0,0,2.88097363929565,0,1.03499260351932,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,2.48366636455389,0,0,0,0,0,0.333694205676207,0.235479278551542,0,1.12108865325516,0,0,0,0,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0.22910686854405,0,0,0.223710863595585,1.3741032706134,0,0,0,0,0,0,0,0,10.5039856296233,0,0,0.617393264863557,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.357107877211315,0,0.481448200135009,0,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0.203977659483963,0,0.275684698604535,0,0,0,0,0,0,0,0.452122368852043,0.993195428733726,0,0,0,0.217716747896961,0,0.202056159043763,0.215166616178029,0.665320713092027,0.407016343054873,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr10:5530789..5530809,- | |short_description=p@chr10:5530789..5530809,- | ||
}} | }} |
Latest revision as of 14:12, 23 July 2015
Short description: | p@chr10:5530789..5530809, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:5530789..5530809, - |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 1.07e-13 | 5 |
intestinal epithelial cell | 2.96e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.44e-14 | 17 |
extraembryonic membrane | 7.83e-13 | 14 |
membranous layer | 7.83e-13 | 14 |
gastrointestinal system | 1.12e-12 | 25 |
large intestine | 9.37e-11 | 11 |
amnion | 6.25e-10 | 7 |
somatic layer of lateral plate mesoderm | 9.52e-09 | 8 |
maxillary sinus | 1.48e-08 | 1 |
paranasal sinus | 1.48e-08 | 1 |
submandibular gland | 1.84e-08 | 1 |
submandibular gland primordium | 1.84e-08 | 1 |
intestinal mucosa | 2.96e-08 | 4 |
wall of intestine | 2.96e-08 | 4 |
gastrointestinal system mucosa | 2.96e-08 | 4 |
gastrointestinal system epithelium | 2.96e-08 | 4 |
intestinal epithelium | 2.96e-08 | 4 |
hepatopancreatic ampulla | 4.07e-08 | 1 |
extrahepatic bile duct | 4.07e-08 | 1 |
common bile duct | 4.07e-08 | 1 |
duodenal papilla | 4.07e-08 | 1 |
rectum | 4.71e-08 | 4 |
colon | 6.14e-08 | 9 |
extraembryonic structure | 2.13e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 7.77e-10 | 25 |
islet cell tumor | 6.03e-09 | 1 |
endocrine pancreas cancer | 6.03e-09 | 1 |
pancreatic endocrine carcinoma | 6.03e-09 | 1 |
paranasal sinus cancer | 1.48e-08 | 1 |
maxillary sinus cancer | 1.48e-08 | 1 |
skin squamous cell carcinoma | 2.13e-08 | 1 |
keratoacanthoma | 2.13e-08 | 1 |
cystadenocarcinoma | 2.46e-08 | 1 |
mucinous cystadenocarcinoma | 2.46e-08 | 1 |
thoracic cancer | 2.47e-08 | 4 |
breast cancer | 2.47e-08 | 4 |
gastrointestinal system cancer | 3.19e-08 | 14 |