FFCP PHASE1:Hg19::chr17:40761660..40761748,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000066!1.48e-24!254;CL:0002321!6.73e-24!248;CL:0000220!2.44e-23!246;CL:0000548!1.98e-15!679;CL:0000004!1.98e-15!679;CL:0000255!1.98e-15!679;CL:0000012!1.54e-14!682;CL:0000055!9.29e-14!180;CL:0000222!3.02e-12!119;CL:0000333!1.89e-09!41;CL:0000221!3.84e-09!71;CL:1000449!2.19e-07!16;CL:0000133!2.28e-07!59;CL:0000076!4.68e-07!62;CL:1000497!5.03e-07!18;CL:0002518!5.03e-07!18;CL:0000183!7.55e-07!59;CL:0002078!9.48e-07!44 | |ontology_enrichment_celltype=CL:0000066!1.48e-24!254;CL:0002321!6.73e-24!248;CL:0000220!2.44e-23!246;CL:0000548!1.98e-15!679;CL:0000004!1.98e-15!679;CL:0000255!1.98e-15!679;CL:0000012!1.54e-14!682;CL:0000055!9.29e-14!180;CL:0000222!3.02e-12!119;CL:0000333!1.89e-09!41;CL:0000221!3.84e-09!71;CL:1000449!2.19e-07!16;CL:0000133!2.28e-07!59;CL:0000076!4.68e-07!62;CL:1000497!5.03e-07!18;CL:0002518!5.03e-07!18;CL:0000183!7.55e-07!59;CL:0002078!9.48e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:1000449;2.92e-08;15!CL:1000497;8.33e-08;17!CL:0002518;8.33e-08;17!CL:0002681;2.67e-07;12!CL:0002584;2.67e-07;12 | |ontology_enrichment_celltype_v019=CL:1000449;2.92e-08;15!CL:1000497;8.33e-08;17!CL:0002518;8.33e-08;17!CL:0002681;2.67e-07;12!CL:0002584;2.67e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.99e-25,253;CL:0002321,5.42e-24,250;CL:0000222,2.78e-12,121;CL:0000333,1.89e-09,41;CL:0000221,8.34e-09,72;CL:1000449,2.88e-08,15;CL:1000497,8.54e-08,17;CL:0002518,8.54e-08,17;CL:0000133,2.28e-07,59;CL:0002681,2.72e-07,12;CL:0002584,2.72e-07,12;CL:0002078,4.07e-07,45;CL:0000213,5.11e-07,58;CL:0000215,5.11e-07,58;CL:0000115,8.26e-07,36;CL:0000076,9.46e-07,63 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!6.58e-15!235;DOID:14566!1.11e-14!239;DOID:0050687!3.94e-10!143;DOID:305!5.72e-08!106 | |ontology_enrichment_disease=DOID:162!6.58e-15!235;DOID:14566!1.11e-14!239;DOID:0050687!3.94e-10!143;DOID:305!5.72e-08!106 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:162,6.58e-15,235;DOID:14566,1.11e-14,239;DOID:0050687,3.94e-10,143;DOID:305,5.72e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0000119!8.34e-13!312;UBERON:0000483!7.32e-12!309;UBERON:0003104!2.40e-11!238;UBERON:0009142!2.40e-11!238;UBERON:0003914!8.84e-11!118;UBERON:0002100!1.29e-10!216;UBERON:0005256!6.79e-10!143;UBERON:0000475!1.04e-09!365;UBERON:0000490!4.39e-09!138;UBERON:0000481!5.14e-08!347;UBERON:0002049!6.96e-08!79;UBERON:0007798!6.96e-08!79;UBERON:0000486!1.01e-07!82;UBERON:0000055!1.66e-07!69;UBERON:0001048!1.82e-07!168;UBERON:0004211!2.19e-07!16;UBERON:0001285!2.19e-07!16;UBERON:0007684!2.19e-07!16;UBERON:0003220!2.19e-07!16;UBERON:0004208!2.19e-07!16;UBERON:0001737!4.57e-07!9;UBERON:0001981!4.75e-07!60;UBERON:0007500!4.75e-07!60;UBERON:0004537!4.75e-07!60;UBERON:0006965!4.75e-07!60;UBERON:0000353!7.77e-07!17;UBERON:0009569!9.73e-07!113 | |ontology_enrichment_uberon=UBERON:0000119!8.34e-13!312;UBERON:0000483!7.32e-12!309;UBERON:0003104!2.40e-11!238;UBERON:0009142!2.40e-11!238;UBERON:0003914!8.84e-11!118;UBERON:0002100!1.29e-10!216;UBERON:0005256!6.79e-10!143;UBERON:0000475!1.04e-09!365;UBERON:0000490!4.39e-09!138;UBERON:0000481!5.14e-08!347;UBERON:0002049!6.96e-08!79;UBERON:0007798!6.96e-08!79;UBERON:0000486!1.01e-07!82;UBERON:0000055!1.66e-07!69;UBERON:0001048!1.82e-07!168;UBERON:0004211!2.19e-07!16;UBERON:0001285!2.19e-07!16;UBERON:0007684!2.19e-07!16;UBERON:0003220!2.19e-07!16;UBERON:0004208!2.19e-07!16;UBERON:0001737!4.57e-07!9;UBERON:0001981!4.75e-07!60;UBERON:0007500!4.75e-07!60;UBERON:0004537!4.75e-07!60;UBERON:0006965!4.75e-07!60;UBERON:0000353!7.77e-07!17;UBERON:0009569!9.73e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.71e-08;30!UBERON:0001008;1.71e-08;30!UBERON:0006555;2.92e-08;15!UBERON:0004819;2.92e-08;15!UBERON:0001285;2.92e-08;15!UBERON:0007684;2.92e-08;15!UBERON:0000353;5.69e-08;15!UBERON:0002113;6.04e-08;24!UBERON:0011143;6.04e-08;24!UBERON:0001225;2.67e-07;12!UBERON:0008987;2.67e-07;12!UBERON:0001851;3.03e-07;15!UBERON:0001737;4.58e-07;9!UBERON:0001557;4.58e-07;9!UBERON:0003914;5.75e-07;74 | |ontology_enrichment_uberon_v019=UBERON:0006554;1.71e-08;30!UBERON:0001008;1.71e-08;30!UBERON:0006555;2.92e-08;15!UBERON:0004819;2.92e-08;15!UBERON:0001285;2.92e-08;15!UBERON:0007684;2.92e-08;15!UBERON:0000353;5.69e-08;15!UBERON:0002113;6.04e-08;24!UBERON:0011143;6.04e-08;24!UBERON:0001225;2.67e-07;12!UBERON:0008987;2.67e-07;12!UBERON:0001851;3.03e-07;15!UBERON:0001737;4.58e-07;9!UBERON:0001557;4.58e-07;9!UBERON:0003914;5.75e-07;74 | ||
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| ||
|short_description=p1@TUBG1 | |short_description=p1@TUBG1 | ||
}} | }} |
Revision as of 03:48, 16 November 2012
Short description: | p1@TUBG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TUBG1_5end |
Coexpression cluster: | C2408_Alveolar_Renal_Mesenchymal_Mammary_chronic_Smooth_Trabecular |
Association with transcript: | 302bp_to_ENST00000251413, NM_001070, uc002ian.2_5end |
EntrezGene: | TUBG1 |
HGNC: | 12417 |
UniProt: | P23258 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.99e-25 | 253 |
embryonic cell | 5.42e-24 | 250 |
mesodermal cell | 2.78e-12 | 121 |
migratory neural crest cell | 1.89e-09 | 41 |
ectodermal cell | 8.34e-09 | 72 |
epithelial cell of nephron | 2.88e-08 | 15 |
kidney cell | 8.54e-08 | 17 |
kidney epithelial cell | 8.54e-08 | 17 |
neurectodermal cell | 2.28e-07 | 59 |
kidney cortical cell | 2.72e-07 | 12 |
renal cortical epithelial cell | 2.72e-07 | 12 |
meso-epithelial cell | 4.07e-07 | 45 |
lining cell | 5.11e-07 | 58 |
barrier cell | 5.11e-07 | 58 |
endothelial cell | 8.26e-07 | 36 |
squamous epithelial cell | 9.46e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
cell layer | 2.00e-12 | 309 |
trunk | 1.28e-11 | 199 |
epithelium | 1.70e-11 | 306 |
epithelial tube | 4.46e-11 | 117 |
unilaminar epithelium | 1.87e-10 | 148 |
epithelial vesicle | 7.16e-09 | 78 |
nephron epithelium | 2.88e-08 | 15 |
renal tubule | 2.88e-08 | 15 |
nephron tubule | 2.88e-08 | 15 |
nephron | 2.88e-08 | 15 |
uriniferous tubule | 2.88e-08 | 15 |
nephrogenic mesenchyme | 2.88e-08 | 15 |
mesenchyme | 4.79e-08 | 160 |
entire embryonic mesenchyme | 4.79e-08 | 160 |
trunk mesenchyme | 5.23e-08 | 122 |
parenchyma | 5.78e-08 | 15 |
vasculature | 6.20e-08 | 78 |
vascular system | 6.20e-08 | 78 |
vessel | 1.46e-07 | 68 |
trunk region element | 1.47e-07 | 101 |
multilaminar epithelium | 1.93e-07 | 83 |
cortex of kidney | 2.72e-07 | 12 |
renal parenchyma | 2.72e-07 | 12 |
cortex | 3.13e-07 | 15 |
excretory tube | 3.72e-07 | 16 |
kidney epithelium | 3.72e-07 | 16 |
epithelial tube open at both ends | 4.12e-07 | 59 |
blood vessel | 4.12e-07 | 59 |
blood vasculature | 4.12e-07 | 59 |
vascular cord | 4.12e-07 | 59 |
larynx | 4.57e-07 | 9 |
subdivision of trunk | 5.95e-07 | 112 |
urinary system structure | 9.72e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.58e-15 | 235 |
disease of cellular proliferation | 1.11e-14 | 239 |
cell type cancer | 3.94e-10 | 143 |
carcinoma | 5.72e-08 | 106 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.