FFCP PHASE1:Hg19::chr7:45952448..45952473,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0002620!4.15e-12!23;CL:0000057!3.60e-11!75;CL:0000499!2.47e-08!27;CL:0000055!6.24e-08!180;CL:0000153!1.51e-07!9;CL:0000447!1.51e-07!9 | |ontology_enrichment_celltype=CL:0002620!4.15e-12!23;CL:0000057!3.60e-11!75;CL:0000499!2.47e-08!27;CL:0000055!6.24e-08!180;CL:0000153!1.51e-07!9;CL:0000447!1.51e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.52e-24;9!CL:0000447;2.52e-24;9!CL:0000138;6.79e-17;6!CL:0000327;2.16e-14;15!CL:0000499;5.41e-13;28!CL:0002620;2.90e-12;23!CL:0000135;3.24e-09;3!CL:0000388;3.24e-09;3!CL:0000214;3.89e-09;3 | |ontology_enrichment_celltype_v019=CL:0000153;2.52e-24;9!CL:0000447;2.52e-24;9!CL:0000138;6.79e-17;6!CL:0000327;2.16e-14;15!CL:0000499;5.41e-13;28!CL:0002620;2.90e-12;23!CL:0000135;3.24e-09;3!CL:0000388;3.24e-09;3!CL:0000214;3.89e-09;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.39e-24,9;CL:0000447,2.39e-24,9;CL:0000058,6.28e-17,6;CL:0000138,6.28e-17,6;CL:0000327,2.10e-14,15;CL:0000499,4.48e-13,28;CL:0002620,2.86e-12,23;CL:0000135,2.15e-09,3;CL:0000388,2.15e-09,3;CL:0000057,3.21e-09,76;CL:0000214,3.98e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.21e-07;1 | |ontology_enrichment_development_v019=UBERON:0000358;1.21e-07;1 | ||
|ontology_enrichment_disease=DOID:17!3.93e-09!5;DOID:450!3.93e-09!5;DOID:66!3.93e-09!5;DOID:423!3.93e-09!5;DOID:0080000!3.93e-09!5;DOID:11722!3.93e-09!5 | |ontology_enrichment_disease=DOID:17!3.93e-09!5;DOID:450!3.93e-09!5;DOID:66!3.93e-09!5;DOID:423!3.93e-09!5;DOID:0080000!3.93e-09!5;DOID:11722!3.93e-09!5 | ||
|ontology_enrichment_disease_v019=DOID:0060084;6.46e-09;3!DOID:127;6.46e-09;3!DOID:2513;1.21e-07;1!DOID:4235;2.65e-07;1!DOID:0060072;6.84e-07;4 | |ontology_enrichment_disease_v019=DOID:0060084;6.46e-09;3!DOID:127;6.46e-09;3!DOID:2513;1.21e-07;1!DOID:4235;2.65e-07;1!DOID:0060072;6.84e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.82e-09,3;DOID:127,3.82e-09,3;DOID:2513,1.18e-07,1;DOID:4235,4.61e-07,1;DOID:0060072,4.63e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004457!2.22e-10!12;UBERON:0000042!2.22e-10!12;UBERON:0003688!2.44e-10!6;UBERON:0002358!2.44e-10!6;UBERON:0003684!2.44e-10!6;UBERON:0001178!2.44e-10!6;UBERON:0002097!1.71e-07!40 | |ontology_enrichment_uberon=UBERON:0004457!2.22e-10!12;UBERON:0000042!2.22e-10!12;UBERON:0003688!2.44e-10!6;UBERON:0002358!2.44e-10!6;UBERON:0003684!2.44e-10!6;UBERON:0001178!2.44e-10!6;UBERON:0002097!1.71e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.19e-11;9!UBERON:0000042;4.19e-11;9!UBERON:0007846;3.24e-09;3!UBERON:0000043;3.24e-09;3!UBERON:0007845;3.24e-09;3!UBERON:0006915;3.89e-09;3!UBERON:0007616;3.89e-09;3!UBERON:0002217;3.89e-09;3!UBERON:0002018;3.89e-09;3 | |ontology_enrichment_uberon_v019=UBERON:0004457;4.19e-11;9!UBERON:0000042;4.19e-11;9!UBERON:0007846;3.24e-09;3!UBERON:0000043;3.24e-09;3!UBERON:0007845;3.24e-09;3!UBERON:0006915;3.89e-09;3!UBERON:0007616;3.89e-09;3!UBERON:0002217;3.89e-09;3!UBERON:0002018;3.89e-09;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,2.15e-09,3;UBERON:0000043,2.15e-09,3;UBERON:0007845,2.15e-09,3;UBERON:0006915,3.98e-09,3;UBERON:0007616,3.98e-09,3;UBERON:0002217,3.98e-09,3;UBERON:0002018,3.98e-09,3;UBERON:0002097,1.83e-08,41;UBERON:0004457,2.86e-08,12;UBERON:0000042,2.86e-08,12;UBERON:0002199,2.04e-07,46;UBERON:0002416,2.04e-07,46 | |||
|phase1_expression=0.363356758541113,0,0.563817616383885,2.00146596706261,0.893922188854576,0.872338524100369,0,0,0,0.245733936501509,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,9.39741796199872,1.50401373190767,7.9665585428453,0,1.45990461090791,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.25326102332916,0,0,0,1.12135520028461,0,0.98667019366864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22595118319608,0,0,1.4351170855109,0.85422955527427,0.423863802319124,3.30100205692843,0.309157587715317,1.54584324027377,0.18611685633159,0.168776332241266,0.487185025805993,3.78650661366172,1.65689817556139,0,3.19508633264953,1.10827308050404,0.67824236924195,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88215698667853,0,0.358121926479791,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,1.66376689224646,0.535286966391485,1.10391690523754,0.468565659970853,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0.153461973288062,0.841980283299221,0.640695746278505,1.02341449813341,0.160853921143607,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0.974853958525138,0,0,0,0,0.551365343546124,3.3171948762061,0.876901770507525,0,0,0,0,0,0,0,0,0,2.53329162357197,1.31717957183961,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,1.18785872333055,0.307160702099232,0,0,0.111308705022906,0,0,0,0,0,0,0,2.48831670129446,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0.957003479195758,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0,0.0870592065804026,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0.599428828746391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,1.62899880526114,1.72844298240254,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.754703705257725,0.889811221596536,0.228840068396924,0.302461847526478,0,0.295710299979268,0,0,0.155262956876259,0,0,0,0,0.761610424337591,0,0,0,0,0,0,0.343395705182793,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0.179088841081487,0.308801447160972,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0.462102664601353,0,0,0,0,1.0085253435176,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0,0,0,0,0.647782773655864,4.29976519098345,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,1.0195626881269,0,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,0,0.0679914901909147,0,0,0.371995018166751,1.84870251452567,3.46101249699031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0.202117188958219,0,0,0,0,0,0,0,0,0.449126010532934,2.34640942403454,0.122241444182866,0,0,0,0 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|phase1_expression=0.363356758541113,0,0.563817616383885,2.00146596706261,0.893922188854576,0.872338524100369,0,0,0,0.245733936501509,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,9.39741796199872,1.50401373190767,7.9665585428453,0,1.45990461090791,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.25326102332916,0,0,0,1.12135520028461,0,0.98667019366864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22595118319608,0,0,1.4351170855109,0.85422955527427,0.423863802319124,3.30100205692843,0.309157587715317,1.54584324027377,0.18611685633159,0.168776332241266,0.487185025805993,3.78650661366172,1.65689817556139,0,3.19508633264953,1.10827308050404,0.67824236924195,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88215698667853,0,0.358121926479791,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,1.66376689224646,0.535286966391485,1.10391690523754,0.468565659970853,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0.153461973288062,0.841980283299221,0.640695746278505,1.02341449813341,0.160853921143607,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0.974853958525138,0,0,0,0,0.551365343546124,3.3171948762061,0.876901770507525,0,0,0,0,0,0,0,0,0,2.53329162357197,1.31717957183961,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,1.18785872333055,0.307160702099232,0,0,0.111308705022906,0,0,0,0,0,0,0,2.48831670129446,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0.957003479195758,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0,0.0870592065804026,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0.599428828746391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,1.62899880526114,1.72844298240254,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.754703705257725,0.889811221596536,0.228840068396924,0.302461847526478,0,0.295710299979268,0,0,0.155262956876259,0,0,0,0,0.761610424337591,0,0,0,0,0,0,0.343395705182793,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0.179088841081487,0.308801447160972,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0.462102664601353,0,0,0,0,1.0085253435176,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0,0,0,0,0.647782773655864,4.29976519098345,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,1.0195626881269,0,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,0,0.0679914901909147,0,0,0.371995018166751,1.84870251452567,3.46101249699031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0.202117188958219,0,0,0,0,0,0,0,0,0.449126010532934,2.34640942403454,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr7:45952448..45952473,+ | |short_description=p@chr7:45952448..45952473,+ | ||
}} | }} |
Revision as of 02:00, 20 November 2012
Short description: | p@chr7:45952448..45952473, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:45952448..45952473, + |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.39e-24 | 9 |
carbohydrate secreting cell | 2.39e-24 | 9 |
chondroblast | 6.28e-17 | 6 |
chondrocyte | 6.28e-17 | 6 |
extracellular matrix secreting cell | 2.10e-14 | 15 |
stromal cell | 4.48e-13 | 28 |
skin fibroblast | 2.86e-12 | 23 |
fibrocyte | 2.15e-09 | 3 |
tendon cell | 2.15e-09 | 3 |
fibroblast | 3.21e-09 | 76 |
synovial cell | 3.98e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 2.15e-09 | 3 |
tendon | 2.15e-09 | 3 |
regular connective tissue | 2.15e-09 | 3 |
stratified squamous epithelium | 3.98e-09 | 3 |
layer of synovial tissue | 3.98e-09 | 3 |
synovial joint | 3.98e-09 | 3 |
synovial membrane of synovial joint | 3.98e-09 | 3 |
skin of body | 1.83e-08 | 41 |
cavity lining | 2.86e-08 | 12 |
serous membrane | 2.86e-08 | 12 |
integument | 2.04e-07 | 46 |
integumental system | 2.04e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.82e-09 | 3 |
leiomyoma | 3.82e-09 | 3 |
basal cell carcinoma | 1.18e-07 | 1 |
spindle cell sarcoma | 4.61e-07 | 1 |
benign neoplasm | 4.63e-07 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.