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MCL coexpression mm9:2819: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003914!7.49e-10!47;UBERON:0005177!1.07e-09!79;UBERON:0005157!1.87e-09!20;UBERON:0002100!1.89e-09!90;UBERON:0009569!3.15e-09!66;UBERON:0005153!2.72e-08!17;UBERON:0002048!3.39e-08!14;UBERON:0000117!3.39e-08!14;UBERON:0000171!3.39e-08!14;UBERON:0000170!3.39e-08!14;UBERON:0005597!3.39e-08!14;UBERON:0000118!3.39e-08!14;UBERON:0004872!4.03e-08!33;UBERON:0004921!5.46e-08!114;UBERON:0004119!6.06e-08!118;UBERON:0000925!6.06e-08!118;UBERON:0006595!6.06e-08!118;UBERON:0001007!6.63e-08!116;UBERON:0001555!6.63e-08!116;UBERON:0007026!6.63e-08!116;UBERON:0004535!8.36e-08!23;UBERON:0001009!8.36e-08!23;UBERON:0000468!4.78e-07!333;UBERON:0007100!9.11e-07!18;UBERON:0000948!9.11e-07!18;UBERON:0005498!9.11e-07!18;UBERON:0004140!9.11e-07!18;UBERON:0009881!9.11e-07!18;UBERON:0004141!9.11e-07!18;UBERON:0003084!9.11e-07!18;UBERON:0007005!9.11e-07!18;UBERON:0004139!9.11e-07!18;UBERON:0004291!9.11e-07!18
}}
}}

Revision as of 19:04, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:115891887..115891923,-p2@Itga1
Mm9::chr13:115891925..115891952,-p4@Itga1
Mm9::chr13:115891962..115891986,-p5@Itga1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
epithelial tube7.49e-1047
trunk region element1.07e-0979
epithelial fold1.87e-0920
trunk1.89e-0990
subdivision of trunk3.15e-0966
epithelial bud2.72e-0817
lung3.39e-0814
respiratory tube3.39e-0814
respiration organ3.39e-0814
pair of lungs3.39e-0814
lung primordium3.39e-0814
lung bud3.39e-0814
splanchnic layer of lateral plate mesoderm4.03e-0833
subdivision of digestive tract5.46e-08114
endoderm-derived structure6.06e-08118
endoderm6.06e-08118
presumptive endoderm6.06e-08118
digestive system6.63e-08116
digestive tract6.63e-08116
primitive gut6.63e-08116
cardiovascular system8.36e-0823
circulatory system8.36e-0823
multi-cellular organism4.78e-07333
primary circulatory organ9.11e-0718
heart9.11e-0718
primitive heart tube9.11e-0718
primary heart field9.11e-0718
anterior lateral plate mesoderm9.11e-0718
heart tube9.11e-0718
heart primordium9.11e-0718
cardiac mesoderm9.11e-0718
cardiogenic plate9.11e-0718
heart rudiment9.11e-0718


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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