FFCP PHASE1:Mm9::chr13:46823281..46823295,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=218210|HGNC=|MCL_coexpression_id=2850|UniProt=E9Q3G8,Q3V3W1,Q8BRF6,Q80WR0|association_with_transcript=-63bp_to_ENSMUST00000021803,NM_175749,uc007qhj.2_5end|description=CAGE_peak_4_at_Nup153_5end|id=chr13:46823281..46823295,-|ontology_enrichment_celltype=CL:0000988!3.47e-08!32;CL:0002032!3.47e-08!32;CL:0000037!3.47e-08!32;CL:0000566!3.47e-08!32;CL:0000837!3.47e-08!32;CL:0000838!4.34e-07!12;CL:0000542!5.77e-07!13;CL:0000051!5.77e-07!13;CL:0000791!8.70e-07!9;CL:0000789!8.70e-07!9;CL:0002420!8.70e-07!9;CL:0002419!8.70e-07!9;CL:0000790!8.70e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,1.78e-10,32;CL:0002032,1.78e-10,32;CL:0000037,1.78e-10,32;CL:0000837,1.78e-10,32;CL:0000791,3.82e-09,9;CL:0000789,3.82e-09,9;CL:0002420,3.82e-09,9;CL:0002419,3.82e-09,9;CL:0000790,3.82e-09,9;CL:0000838,8.49e-09,12;CL:0002031,1.78e-08,25;CL:0000084,3.10e-08,11;CL:0000827,3.10e-08,11;CL:0000624,3.55e-08,8;CL:0000542,8.11e-08,13;CL:0000051,8.11e-08,13|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0003929,1.65e-07,55;UBERON:0004177,5.97e-07,29;UBERON:0005057,5.97e-07,29;UBERON:0002390,7.86e-07,45;UBERON:0003061,7.86e-07,45|phase1_expression=0.80074423552397,0.697950815278722,0.909998478779072,1.51232105653415,4.00716583957078,2.51818907867835,2.10251376535973,7.48915275961142,19.42884365693,19.6614202110475,1.88339765048055,1.67521533890206,6.16322627752341,4.54586092578786,2.6648780945253,3.23960427823721,1.39912375625629,2.20823515750766,1.50825876966313,0.84877930359606,1.19060606211498,1.39007331681239,0.783599367416806,0.47997726838022,0.45881856213434,0.57423196411502,1.7230479846363,2.15471232685889,0.380046838912748,1.51218077855958,1.10865255327652,3.17515336729816,2.46025915033828,0,1.44425809875637,1.82858109894342,2.24586291888606,2.09265815368454,0.7813353445238,1.57057123192139,1.76469446409304,2.04913645487534,0.485510353031154,0.125896817975577,0.202753862439029,0.367093504323363,0,0.218025156380447,0.439372365468944,0.388859798148567,0.419959264876088,0,2.01339127269284,12.3311564141929,7.73015738027667,0.514518872071894,0.573066879877513,1.54701627683233,0.809265843438391,0,1.26766280701236,0.338844532069132,0,0.449949858640699,0,0,0.299600110518405,0.768436610643109,1.24427534770173,0.675029691658453,0.841299845405528,0.571301968807607,0.662605622854841,0.857435594504678,1.15014565221884,0,1.10115880999389,0.383062014255563,0.614426133024974,0.395658863190582,0.0914876436024097,0.52091337055676,0.279182999001381,0,0.916789486660861,0.883885756421003,1.13897344639282,0.372798891650601,0.454357159999104,0.453429360640713,2.6087803983151,0.860423876981386,4.75979933595425,0,0,0,0.140444420131752,0,0.779358013808606,0,0.704217098883403,0,2.54805239706646,0,0.649473123033642,0.760079596425296,1.01104889002957,0.68510327831436,0.517875767294343,0.29688427812965,2.08182392119363,0.304465478312141,0.230615497256059,0.60289056221049,0.23517741427141,0.376999773989026,0.494389935468748,0.144599356919912,6.19227386364912,0.485300549842228,1.98757366614354,2.90925151881133,0,0.292780797011547,0.41889341362691,1.02182822083437,3.95389910869537,4.79922184794726,1.90605340609597,0.149790639404823,0,0.628271760564322,0.695297280769106,0.255715457330331,0.20778804455956,0.162241263067758,1.01839363850316,0.746441823660558,0.758168275301024,0,0.780722657776222,0.919608417733892,0.360124259610698,0.753524089178575,1.02054748726992,0.768682321709099,1.21812241927647,0.517406741478031,2.37124792226126,0.378212160335639,0.527853372491847,0.43839146485515,0.278047249225598,0,0.411564272815887,0.796137067273973,0.702213187313235,3.3455227924913,1.70498099637356,0.828503090142008,0.469052119962192,0,0.473489471170421,0.196764231747404,0,0.465067889500816,0.268273401399619,0.583826711835847,0.329119699826961,0.164167464079095,0.324275238183423,0.146199987425332,0,0.536825675041487,0,1.13195073617213,0.660837565967596,0.528901133327089,0.853153002140936,0.696710015581316,1.15980715189884,0.403367049246685,1.33426826306922,0.190225626112559,1.89811624617805,0.164698954724011,0,0.596869416123452,0.38992817423824,0.898819408654221,0.432276099749388,0.199141273254367,0.948339504765408,1.25673363870702,2.25415471346161,0.814605311381257,0.193952487167626,0.561086559122548,0.379419222745544,0.147610147979602,0.31399745568275,0.370191491765402,0,2.16898637430922,3.73462090715086,3.82265591054251,4.86864291332407,1.92941727801933,1.52775511068852,2.01387296215567,0.972811360650212,0.823684239564244,0,0,0.312037673114561,0.505157755894224,0,0,0.369506380333209,0.757965647081939,1.14075483509418,0.848725428875941,0.234690248288502,0.502518772325447,0,0.780534591431195,0.315270288212382,0.8858587585951,0.318909537314974,0.491589944147214,0.172684981865896,0.578596234326046,0,0,0,0.275936746304732,0.160550589987792,0.586058432961016,0.491804836130026,0.504941854408746,0.94652465824877,1.56175497718655,1.29254038639679,0.955875191810208,0.44559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| ||
|EntrezGene=218210 | |||
|HGNC= | |||
|MCL_coexpression_id=2850 | |||
|UniProt=E9Q3G8,Q3V3W1,Q8BRF6,Q80WR0 | |||
|association_with_transcript=-63bp_to_ENSMUST00000021803,NM_175749,uc007qhj.2_5end | |||
|description=CAGE_peak_4_at_Nup153_5end | |||
|id=chr13:46823281..46823295,- | |||
|ontology_enrichment_celltype=CL:0000988!3.47e-08!32;CL:0002032!3.47e-08!32;CL:0000037!3.47e-08!32;CL:0000566!3.47e-08!32;CL:0000837!3.47e-08!32;CL:0000838!4.34e-07!12;CL:0000542!5.77e-07!13;CL:0000051!5.77e-07!13;CL:0000791!8.70e-07!9;CL:0000789!8.70e-07!9;CL:0002420!8.70e-07!9;CL:0002419!8.70e-07!9;CL:0000790!8.70e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.78e-10,32;CL:0002032,1.78e-10,32;CL:0000037,1.78e-10,32;CL:0000837,1.78e-10,32;CL:0000791,3.82e-09,9;CL:0000789,3.82e-09,9;CL:0002420,3.82e-09,9;CL:0002419,3.82e-09,9;CL:0000790,3.82e-09,9;CL:0000838,8.49e-09,12;CL:0002031,1.78e-08,25;CL:0000084,3.10e-08,11;CL:0000827,3.10e-08,11;CL:0000624,3.55e-08,8;CL:0000542,8.11e-08,13;CL:0000051,8.11e-08,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003929,1.65e-07,55;UBERON:0004177,5.97e-07,29;UBERON:0005057,5.97e-07,29;UBERON:0002390,7.86e-07,45;UBERON:0003061,7.86e-07,45 | |||
|phase1_expression=0.80074423552397,0.697950815278722,0.909998478779072,1.51232105653415,4.00716583957078,2.51818907867835,2.10251376535973,7.48915275961142,19.42884365693,19.6614202110475,1.88339765048055,1.67521533890206,6.16322627752341,4.54586092578786,2.6648780945253,3.23960427823721,1.39912375625629,2.20823515750766,1.50825876966313,0.84877930359606,1.19060606211498,1.39007331681239,0.783599367416806,0.47997726838022,0.45881856213434,0.57423196411502,1.7230479846363,2.15471232685889,0.380046838912748,1.51218077855958,1.10865255327652,3.17515336729816,2.46025915033828,0,1.44425809875637,1.82858109894342,2.24586291888606,2.09265815368454,0.7813353445238,1.57057123192139,1.76469446409304,2.04913645487534,0.485510353031154,0.125896817975577,0.202753862439029,0.367093504323363,0,0.218025156380447,0.439372365468944,0.388859798148567,0.419959264876088,0,2.01339127269284,12.3311564141929,7.73015738027667,0.514518872071894,0.573066879877513,1.54701627683233,0.809265843438391,0,1.26766280701236,0.338844532069132,0,0.449949858640699,0,0,0.299600110518405,0.768436610643109,1.24427534770173,0.675029691658453,0.841299845405528,0.571301968807607,0.662605622854841,0.857435594504678,1.15014565221884,0,1.10115880999389,0.383062014255563,0.614426133024974,0.395658863190582,0.0914876436024097,0.52091337055676,0.279182999001381,0,0.916789486660861,0.883885756421003,1.13897344639282,0.372798891650601,0.454357159999104,0.453429360640713,2.6087803983151,0.860423876981386,4.75979933595425,0,0,0,0.140444420131752,0,0.779358013808606,0,0.704217098883403,0,2.54805239706646,0,0.649473123033642,0.760079596425296,1.01104889002957,0.68510327831436,0.517875767294343,0.29688427812965,2.08182392119363,0.304465478312141,0.230615497256059,0.60289056221049,0.23517741427141,0.376999773989026,0.494389935468748,0.144599356919912,6.19227386364912,0.485300549842228,1.98757366614354,2.90925151881133,0,0.292780797011547,0.41889341362691,1.02182822083437,3.95389910869537,4.79922184794726,1.90605340609597,0.149790639404823,0,0.628271760564322,0.695297280769106,0.255715457330331,0.20778804455956,0.162241263067758,1.01839363850316,0.746441823660558,0.758168275301024,0,0.780722657776222,0.919608417733892,0.360124259610698,0.753524089178575,1.02054748726992,0.768682321709099,1.21812241927647,0.517406741478031,2.37124792226126,0.378212160335639,0.527853372491847,0.43839146485515,0.278047249225598,0,0.411564272815887,0.796137067273973,0.702213187313235,3.3455227924913,1.70498099637356,0.828503090142008,0.469052119962192,0,0.473489471170421,0.196764231747404,0,0.465067889500816,0.268273401399619,0.583826711835847,0.329119699826961,0.164167464079095,0.324275238183423,0.146199987425332,0,0.536825675041487,0,1.13195073617213,0.660837565967596,0.528901133327089,0.853153002140936,0.696710015581316,1.15980715189884,0.403367049246685,1.33426826306922,0.190225626112559,1.89811624617805,0.164698954724011,0,0.596869416123452,0.38992817423824,0.898819408654221,0.432276099749388,0.199141273254367,0.948339504765408,1.25673363870702,2.25415471346161,0.814605311381257,0.193952487167626,0.561086559122548,0.379419222745544,0.147610147979602,0.31399745568275,0.370191491765402,0,2.16898637430922,3.73462090715086,3.82265591054251,4.86864291332407,1.92941727801933,1.52775511068852,2.01387296215567,0.972811360650212,0.823684239564244,0,0,0.312037673114561,0.505157755894224,0,0,0.369506380333209,0.757965647081939,1.14075483509418,0.848725428875941,0.234690248288502,0.502518772325447,0,0.780534591431195,0.315270288212382,0.8858587585951,0.318909537314974,0.491589944147214,0.172684981865896,0.578596234326046,0,0,0,0.275936746304732,0.160550589987792,0.586058432961016,0.491804836130026,0.504941854408746,0.94652465824877,1.56175497718655,1.29254038639679,0.955875191810208,0.445597348164788,0.566153061577665,2.02405350837447,1.16902343164525,0,0.321321316421807,0.567760340833074,0.712262414669021,0.651547837414304,0.494910368917606,0,0.485561272309963,0.906970670894253,0,0,0.307435147943927,0.516856586336442,1.09060118843252,0.712994756769443,1.26414703174326,0,3.09406629744561,1.36175842301515,1.08036656418786,0.388076051348264,0.214337035031592,0.886701168211368,0.356737635204141,0.822745103010605,0.304464949114599,0.704015124191131,1.0591603543191,0.220528398054962,0,0.484393280087717,0.784068024066026,0.238744688006273,0.656563598980245,0.291480836629851,0.18542530201051,5.46786818553129,0.619160603889667,0.370389054739423,2.44878994106098,2.59719032669948,2.74533807847827,2.71965487990169,5.03825228365169,4.00779924032829,0,1.26534397432454,0.406638934253697,0.324016022465404,1.25452977608681,0.218362563746178,0.269728692769641,0.661227645802687,0,0.388844919875379,1.24267862617385,10.1464728963154,0.448549638131936,0.827292452285488,0.194451188344048,0.645799117388655,0.675824501963113,0.352071715937262,1.0416350787516,2.20204623293993,3.38217769156408,3.16833006883652,1.89606672376907,0.405450430580328,0.821687657318618,1.81889152168913,0.895133478337407,1.39076948346885,1.3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| |||
|short_description=p4@Nup153 | |||
}} | |||
Revision as of 00:39, 13 September 2013
| Short description: | p4@Nup153 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Nup153_5end |
| Coexpression cluster: | MCL_coexpression_mm9:2850 |
| Association with transcript: | -63bp_to_ENSMUST00000021803, NM_175749, uc007qhj.2_5end |
| EntrezGene: | Nup153 |
| Link to Zenbu: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic cell | 1.78e-10 | 32 |
| hematopoietic oligopotent progenitor cell | 1.78e-10 | 32 |
| hematopoietic stem cell | 1.78e-10 | 32 |
| hematopoietic multipotent progenitor cell | 1.78e-10 | 32 |
| mature alpha-beta T cell | 3.82e-09 | 9 |
| alpha-beta T cell | 3.82e-09 | 9 |
| immature T cell | 3.82e-09 | 9 |
| mature T cell | 3.82e-09 | 9 |
| immature alpha-beta T cell | 3.82e-09 | 9 |
| lymphoid lineage restricted progenitor cell | 8.49e-09 | 12 |
| hematopoietic lineage restricted progenitor cell | 1.78e-08 | 25 |
| T cell | 3.10e-08 | 11 |
| pro-T cell | 3.10e-08 | 11 |
| CD4-positive, alpha-beta T cell | 3.55e-08 | 8 |
| lymphocyte | 8.11e-08 | 13 |
| common lymphoid progenitor | 8.11e-08 | 13 |
| Ontology term | p-value | n |
|---|---|---|
| gut epithelium | 1.65e-07 | 55 |
| hemopoietic organ | 5.97e-07 | 29 |
| immune organ | 5.97e-07 | 29 |
| hematopoietic system | 7.86e-07 | 45 |
| blood island | 7.86e-07 | 45 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
