FFCP PHASE1:Mm9::chr17:78817388..78817406,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=98|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:78817388..78817406,-|id=chr17:78817388..78817406,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000239,4.71e-12,6;CL:0000677,4.71e-12,6;CL:0000584,4.71e-12,6;CL:0000222,1.03e-10,7;CL:0000075,2.79e-10,7;CL:0000192,3.63e-10,3;CL:0000359,3.63e-10,3;CL:0002539,3.63e-10,3;CL:0000514,3.63e-10,3;CL:0000680,1.52e-08,6;CL:0000187,1.52e-08,6;CL:0000056,1.52e-08,6;CL:0002563,6.49e-08,9;CL:0002251,6.49e-08,9;CL:0000066,7.03e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000344,5.23e-11,15;UBERON:0001135,3.63e-10,3;UBERON:0004237,3.63e-10,3;UBERON:0004695,3.63e-10,3;UBERON:0002111,3.63e-10,3;UBERON:0004178,3.63e-10,3;UBERON:0001242,4.42e-10,13;UBERON:0001262,4.42e-10,13;UBERON:0004786,4.42e-10,13;UBERON:0000055,5.69e-10,5;UBERON:0007500,5.69e-10,5;UBERON:0001981,5.69e-10,5;UBERON:0002049,5.69e-10,5;UBERON:0007798,5.69e-10,5;UBERON:0004537,5.69e-10,5;UBERON:0006965,5.69e-10,5;UBERON:0000160,6.33e-09,31;UBERON:0003350,6.49e-08,9;UBERON:0004808,6.49e-08,9;UBERON:0001277,6.49e-08,9;UBERON:0000947,1.06e-07,4;UBERON:0001637,1.06e-07,4;UBERON:0004573,1.06e-07,4;UBERON:0003509,1.06e-07,4;UBERON:0004571,1.06e-07,4;UBERON:0010191,1.06e-07,4;UBERON:0004572,1.06e-07,4|phase1_expression=0.160148847104794,7.32848356042658,3.18499467572675,3.93203474698879,4.50806156951712,1.00727563147134,0,0.387369970324729,0.281577444303333,0.234064526321993,0,0,0,0.0874204024189974,0.666219523631325,0.202475267389826,0,0,0,0,0.255129870453209,0,0,1.27993938234725,0.91763712426868,5.7423196411502,0.86152399231815,2.80112602491656,0.760093677825496,2.52030129759931,0.443461021310609,0,0,0,0.288851619751275,0,0.204169356262369,0.418531630736908,0,0,0,0,0,9.81995180209503,6.89363132292699,10.4621648732158,0,1.09012578190223,0.878744730937887,0.388859798148567,0.279972843250725,0,0,0,0.336093799142464,3.8588915405392,0.85960031981627,0.515672092277442,0,0,0.633831403506179,2.03306719241479,0.889294796111139,0,0,0,0,0,0,0.270011876663381,0,0,0,0.244981598429908,0.191690942036473,0,0,0.510749352340751,0.921639199537461,0.263772575460388,0.0914876436024097,0.52091337055676,0.837548997004143,0.56276261003168,0.45839474333043,0.589257170947335,0.569486723196412,0,0.605809546665472,0.302286240427142,1.44932244350839,0,2.719885334831,0,0.649776417447669,0,0.140444420131752,0,0.259786004602869,0.70667914902068,0.281686839553361,0,0,0,0.216491041011214,0.506719730950197,0.505524445014783,0.11418387971906,0,0,0.520455980298408,0,0.230615497256059,0,0.117588707135705,0,0.247194967734374,0.289198713839823,0,0,0.220841518460394,0,0,0.292780797011547,0.628340120440365,0.510914110417183,0.359445373517761,0,0.127070227073065,0.149790639404823,0,0,0.347648640384553,0,1.0389402227978,0.973447578406546,0.101839363850316,0.124406970610093,0,0.631325567659422,0.130120442962704,0.229902104433473,0.900310649026746,0.30140963567143,1.02054748726992,0.640568601424249,0.937017245597288,0.776110112217047,0,0,0,0.219195732427575,0,0,0,0,0.702213187313235,0,0,0,0.234526059981096,0.180062061461015,0.473489471170421,0,0,0,0,0.467061369468678,0.16455984991348,0.164167464079095,0.162137619091711,0.438599962275997,0,0.402619256281115,0.210289948564127,0.308713837137853,2.64335026387038,1.58670339998127,0,0,0.128867461322093,0,0,0,0.949058123089023,0.494096864172033,0.251335208800269,0.994782360205754,0.19496408711912,1.79763881730844,0.864552199498777,1.1948476395262,0.189667900953082,0.114248512609729,0,0,0.193952487167626,0,0,0.295220295959204,0.156998727841375,0.246794327843601,0,0.166845105716094,0.393117990226406,0,0,0.241177159752417,0,0,0.162135226775035,0,1.43768206527355,0.372140947668503,0,0,0,0,0.369506380333209,0,0,0.169745085775188,0,0,0.714130922658041,0,0.315270288212382,0,0.159454768657487,0.163863314715738,0,0.289298117163023,0,0,0,0,0.80275294993896,1.40654023910644,2.95082901678016,0,1.26203287766503,1.56175497718655,0.215423397732799,0,0.668396022247182,0,0.404810701674894,1.46127928955656,0.790575555893047,0,0.851640511249612,0,0.162886959353576,0,1.32745138339963,0,0.302323556964751,0,0,0,0.258428293168221,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0.177340233642274,0,0.164549020602121,0,0.469343416127421,0.21183207086382,0,0.32977250588296,0.161464426695906,0.241251699712623,0,0,2.33184669303881,0,0,0.206386867963223,0.370389054739423,0,0.136694227721025,0,0,0.279902904647316,0.138199973804424,0,0,0,0,0,0,0,0.0826534557253359,0,0.518459893167171,0.621339313086926,0,0,0,0,0,0,0.234714477291508,0.13020438484395,0.209718688851422,0.241584120826006,0,0,0,0,0,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0.0962118416403295,0,0.226730383615211,0.221985953374065,1.43542170575161,0.671538465456314,1.15913756419314,0.750729901804728,0,0.214368379079066,0,0,0.460325236507177,0,0,0,0,0,0.45032120322422,0,0,0.103787347584177,0,0.341467211508268,0,0,0,0.44449345560323,0,0,0.252697211763798,0.25347929989024,0,0.280924522409647,0.192075457214608,0.114870937911227,0,0,0.192909220463705,0,0.147198920134397,0,0,0.476872379894642,0.290692833264657,0,0.169229215783353,0.365855945745545,0.263069711437843,0.135804113845862,0,0.118635018124174,0.29551344712669,0,0,0,0,0,0,0.191288332068843,0.220591419119515,0.231867835620421|short_description=p@chr17:78817388..78817406,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=98 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:78817388..78817406,- | |||
|id=chr17:78817388..78817406,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,4.71e-12,6;CL:0000677,4.71e-12,6;CL:0000584,4.71e-12,6;CL:0000222,1.03e-10,7;CL:0000075,2.79e-10,7;CL:0000192,3.63e-10,3;CL:0000359,3.63e-10,3;CL:0002539,3.63e-10,3;CL:0000514,3.63e-10,3;CL:0000680,1.52e-08,6;CL:0000187,1.52e-08,6;CL:0000056,1.52e-08,6;CL:0002563,6.49e-08,9;CL:0002251,6.49e-08,9;CL:0000066,7.03e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,5.23e-11,15;UBERON:0001135,3.63e-10,3;UBERON:0004237,3.63e-10,3;UBERON:0004695,3.63e-10,3;UBERON:0002111,3.63e-10,3;UBERON:0004178,3.63e-10,3;UBERON:0001242,4.42e-10,13;UBERON:0001262,4.42e-10,13;UBERON:0004786,4.42e-10,13;UBERON:0000055,5.69e-10,5;UBERON:0007500,5.69e-10,5;UBERON:0001981,5.69e-10,5;UBERON:0002049,5.69e-10,5;UBERON:0007798,5.69e-10,5;UBERON:0004537,5.69e-10,5;UBERON:0006965,5.69e-10,5;UBERON:0000160,6.33e-09,31;UBERON:0003350,6.49e-08,9;UBERON:0004808,6.49e-08,9;UBERON:0001277,6.49e-08,9;UBERON:0000947,1.06e-07,4;UBERON:0001637,1.06e-07,4;UBERON:0004573,1.06e-07,4;UBERON:0003509,1.06e-07,4;UBERON:0004571,1.06e-07,4;UBERON:0010191,1.06e-07,4;UBERON:0004572,1.06e-07,4 | |||
|phase1_expression=0.160148847104794,7.32848356042658,3.18499467572675,3.93203474698879,4.50806156951712,1.00727563147134,0,0.387369970324729,0.281577444303333,0.234064526321993,0,0,0,0.0874204024189974,0.666219523631325,0.202475267389826,0,0,0,0,0.255129870453209,0,0,1.27993938234725,0.91763712426868,5.7423196411502,0.86152399231815,2.80112602491656,0.760093677825496,2.52030129759931,0.443461021310609,0,0,0,0.288851619751275,0,0.204169356262369,0.418531630736908,0,0,0,0,0,9.81995180209503,6.89363132292699,10.4621648732158,0,1.09012578190223,0.878744730937887,0.388859798148567,0.279972843250725,0,0,0,0.336093799142464,3.8588915405392,0.85960031981627,0.515672092277442,0,0,0.633831403506179,2.03306719241479,0.889294796111139,0,0,0,0,0,0,0.270011876663381,0,0,0,0.244981598429908,0.191690942036473,0,0,0.510749352340751,0.921639199537461,0.263772575460388,0.0914876436024097,0.52091337055676,0.837548997004143,0.56276261003168,0.45839474333043,0.589257170947335,0.569486723196412,0,0.605809546665472,0.302286240427142,1.44932244350839,0,2.719885334831,0,0.649776417447669,0,0.140444420131752,0,0.259786004602869,0.70667914902068,0.281686839553361,0,0,0,0.216491041011214,0.506719730950197,0.505524445014783,0.11418387971906,0,0,0.520455980298408,0,0.230615497256059,0,0.117588707135705,0,0.247194967734374,0.289198713839823,0,0,0.220841518460394,0,0,0.292780797011547,0.628340120440365,0.510914110417183,0.359445373517761,0,0.127070227073065,0.149790639404823,0,0,0.347648640384553,0,1.0389402227978,0.973447578406546,0.101839363850316,0.124406970610093,0,0.631325567659422,0.130120442962704,0.229902104433473,0.900310649026746,0.30140963567143,1.02054748726992,0.640568601424249,0.937017245597288,0.776110112217047,0,0,0,0.219195732427575,0,0,0,0,0.702213187313235,0,0,0,0.234526059981096,0.180062061461015,0.473489471170421,0,0,0,0,0.467061369468678,0.16455984991348,0.164167464079095,0.162137619091711,0.438599962275997,0,0.402619256281115,0.210289948564127,0.308713837137853,2.64335026387038,1.58670339998127,0,0,0.128867461322093,0,0,0,0.949058123089023,0.494096864172033,0.251335208800269,0.994782360205754,0.19496408711912,1.79763881730844,0.864552199498777,1.1948476395262,0.189667900953082,0.114248512609729,0,0,0.193952487167626,0,0,0.295220295959204,0.156998727841375,0.246794327843601,0,0.166845105716094,0.393117990226406,0,0,0.241177159752417,0,0,0.162135226775035,0,1.43768206527355,0.372140947668503,0,0,0,0,0.369506380333209,0,0,0.169745085775188,0,0,0.714130922658041,0,0.315270288212382,0,0.159454768657487,0.163863314715738,0,0.289298117163023,0,0,0,0,0.80275294993896,1.40654023910644,2.95082901678016,0,1.26203287766503,1.56175497718655,0.215423397732799,0,0.668396022247182,0,0.404810701674894,1.46127928955656,0.790575555893047,0,0.851640511249612,0,0.162886959353576,0,1.32745138339963,0,0.302323556964751,0,0,0,0.258428293168221,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0.177340233642274,0,0.164549020602121,0,0.469343416127421,0.21183207086382,0,0.32977250588296,0.161464426695906,0.241251699712623,0,0,2.33184669303881,0,0,0.206386867963223,0.370389054739423,0,0.136694227721025,0,0,0.279902904647316,0.138199973804424,0,0,0,0,0,0,0,0.0826534557253359,0,0.518459893167171,0.621339313086926,0,0,0,0,0,0,0.234714477291508,0.13020438484395,0.209718688851422,0.241584120826006,0,0,0,0,0,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0.0962118416403295,0,0.226730383615211,0.221985953374065,1.43542170575161,0.671538465456314,1.15913756419314,0.750729901804728,0,0.214368379079066,0,0,0.460325236507177,0,0,0,0,0,0.45032120322422,0,0,0.103787347584177,0,0.341467211508268,0,0,0,0.44449345560323,0,0,0.252697211763798,0.25347929989024,0,0.280924522409647,0.192075457214608,0.114870937911227,0,0,0.192909220463705,0,0.147198920134397,0,0,0.476872379894642,0.290692833264657,0,0.169229215783353,0.365855945745545,0.263069711437843,0.135804113845862,0,0.118635018124174,0.29551344712669,0,0,0,0,0,0,0.191288332068843,0.220591419119515,0.231867835620421 | |||
|short_description=p@chr17:78817388..78817406,- | |||
}} |
Revision as of 15:20, 13 September 2013
Short description: | p@chr17:78817388..78817406, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:78817388..78817406, - |
Coexpression cluster: | MCL_coexpression_mm9:98 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 4.71e-12 | 6 |
gut absorptive cell | 4.71e-12 | 6 |
enterocyte | 4.71e-12 | 6 |
mesodermal cell | 1.03e-10 | 7 |
columnar/cuboidal epithelial cell | 2.79e-10 | 7 |
smooth muscle cell | 3.63e-10 | 3 |
vascular associated smooth muscle cell | 3.63e-10 | 3 |
aortic smooth muscle cell | 3.63e-10 | 3 |
smooth muscle myoblast | 3.63e-10 | 3 |
muscle precursor cell | 1.52e-08 | 6 |
muscle cell | 1.52e-08 | 6 |
myoblast | 1.52e-08 | 6 |
intestinal epithelial cell | 6.49e-08 | 9 |
epithelial cell of alimentary canal | 6.49e-08 | 9 |
epithelial cell | 7.03e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
mucosa | 5.23e-11 | 15 |
smooth muscle tissue | 3.63e-10 | 3 |
blood vessel smooth muscle | 3.63e-10 | 3 |
arterial system smooth muscle | 3.63e-10 | 3 |
artery smooth muscle tissue | 3.63e-10 | 3 |
aorta smooth muscle tissue | 3.63e-10 | 3 |
intestinal mucosa | 4.42e-10 | 13 |
wall of intestine | 4.42e-10 | 13 |
gastrointestinal system mucosa | 4.42e-10 | 13 |
vessel | 5.69e-10 | 5 |
epithelial tube open at both ends | 5.69e-10 | 5 |
blood vessel | 5.69e-10 | 5 |
vasculature | 5.69e-10 | 5 |
vascular system | 5.69e-10 | 5 |
blood vasculature | 5.69e-10 | 5 |
vascular cord | 5.69e-10 | 5 |
intestine | 6.33e-09 | 31 |
epithelium of mucosa | 6.49e-08 | 9 |
gastrointestinal system epithelium | 6.49e-08 | 9 |
intestinal epithelium | 6.49e-08 | 9 |
aorta | 1.06e-07 | 4 |
artery | 1.06e-07 | 4 |
systemic artery | 1.06e-07 | 4 |
arterial blood vessel | 1.06e-07 | 4 |
systemic arterial system | 1.06e-07 | 4 |
aortic system | 1.06e-07 | 4 |
arterial system | 1.06e-07 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.