FFCP PHASE1:Hg19::chr11:126225900..126225954,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6484|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10864|TSSclassifier=S|UniProt=|association_with_transcript=31bp_to_ENST00000534083_5end|coexpression_cluster_id=C58|description=CAGE_peak_3_at_ST3GAL4_5end|id=chr11:126225900..126225954,+|ontology_enrichment_celltype=CL:0000055!2.04e-12!180;CL:0000147!3.37e-07!14;CL:0000057!3.41e-07!75|ontology_enrichment_celltype_v019=CL:0000147;4.66e-16;14!CL:0000148;1.05e-11;10!CL:0000149;3.69e-10;4!CL:0002567;2.04e-08;3!CL:0002586;6.82e-08;3!CL:0000784;6.46e-07;3|ontology_enrichment_celltype_v019_2=CL:0000147,4.36e-16,14;CL:0000148,1.09e-11,10;CL:0000541,1.09e-11,10;CL:0000149,3.21e-10,4;CL:0002567,2.05e-08,3;CL:0002586,5.91e-08,3;CL:0000784,7.18e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0001737;1.39e-14;9!UBERON:0001557;1.39e-14;9!UBERON:0000966;4.93e-08;5!UBERON:0005388;4.93e-08;5!UBERON:0001802;4.93e-08;5!UBERON:0001781;6.82e-08;3!UBERON:0001782;6.82e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.86e-15,9;UBERON:0001782,5.91e-08,3;UBERON:0005424,5.91e-08,3;UBERON:0001557,7.95e-08,19|phase1_expression=0.908391896352783,0,0.563817616383885,0,1.78784437770915,1.74467704820074,0,0,0.783556884599516,0,0,0,0,0.123766352960047,0,2.01697543935533,0.602694528023977,0,0,0,0,0,0,0.273748850145768,0,0,0,0,1.18009283054671,0,0,0,0.30120591877825,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,0.329851300186716,0.398927315243264,0.426224750532694,0,0,0.622822248995575,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,1.02290049474824,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0.785874452986276,0,0,0,0.348259474598534,0,2.38490624305342,1.71598473234038,1.11437250398869,0,1.72046919021225,0.347140501607594,0,0.838998872419812,0,0.417989933073621,0,0,0,0.402829317109147,0.760272105718513,0,0,0,0.17859945656816,0,0.225222960966644,0,0,0,0,0,0,0,0.506522046658319,0.132409180813219,0.573673241497627,1.77334191099179,1.12135520028461,0,0,1.8672662123986,0.404132016209064,0.653847612453835,0.756787138224657,0,0.234321431833797,0.312160076830321,0,0.448346041655403,0.23486899728753,0.323745888736263,0.421352420106746,0.408308342509787,0.491337269247072,0.723280468230358,1.18800285728205,0.247266929278557,0.910161361938026,1.43723628363248,0.168336113954066,0.250237039743928,0.554128230968366,0.438977620880838,0.30648779579902,0.45071417671979,0.567160915800105,1.07633781413317,0.213557388818567,0.423863802319124,0.900273288253207,0.206105058476878,0,0,0.843881661206331,1.07180705677318,0.252433774244115,0.552299391853796,1.2931684545505,0.710019185033229,0.503760491138201,0.508681776931463,0.57978255948989,0.272746120590835,0.286804595389004,0,0,0,0.10366105501537,0.252320850875628,0,6.25798129319264,0,5.52539685409922,0,0.721879481669586,1.8929088006375,2.36018566109342,1.92808823906786,3.639701100169,2.17879444092406,2.60997681022206,2.83145747136345,1.56977172100277,0,0.738155454624648,0,0,1.47008711385542,0,0,0,0,0.122988438543114,0.171567810298526,0.219500570817251,2.24803506515239,0,0.277765335475589,0,0,0,0.115930404975077,0,0,0,0,1.58040879591855,0,0,0,0.148631162288728,0,0.335964256397719,0.425325291727159,0.179117045405697,0,0.766765358330422,0,4.31437326664808,0.621984346622316,0.288239906833923,0.88369703398466,11.2391272897139,13.751583320098,18.7547915536075,30.7930402840869,17.6863287449716,27.0308752059526,18.0070652557264,0.336393253036082,0.43596006883328,0.36669142910475,0.129271715757778,0,2.535908257668,0.26593811658487,0,0.257207374262142,0,0.799266537048298,0.428933980974443,1.08524321078289,0,0.977208552881205,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0.179060963239896,0,0,0,0.128343036279748,0,0,0.773288812777695,0,0,0.749007023947182,0,0,0.12269149171914,0,0,0.415941723061614,0.535286966391485,1.26161932027148,0.117141414992713,0.300946099727719,0,1.03473071292505,0,0.553107505625109,0.0868836144680828,0.979005787313703,0.343143423810856,0,0,0.106727557803444,0,0,0,0.248107807818777,0.153461973288062,1.12264037773229,0.256278298511402,0,0.321707842287215,0,0.925258162815933,1.59805552781814,0.657017248110473,0,1.16210378459959,0,0.200506470303285,0,0.229628896329213,0.546273504020151,1.18011973463482,0,0,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0.254876273045038,0,0,0,0,3.59030175162945,4.26419039409617,2.92840555197873,0.618246069886334,0.457847324091717,0.41254749960294,0,0,0,0.290012154876366,0.462145851343933,0.614014698904518,0.275673144969061,0.322260734604821,0.290033387828457,0.426133137080504,0.979352392114111,0,0,0,0,0.464845549297286,0,0,0.308033580176089,0,0,0.18532421910392,0.1431248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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6484 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10864 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=31bp_to_ENST00000534083_5end | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_3_at_ST3GAL4_5end | |||
|id=chr11:126225900..126225954,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.04e-12!180;CL:0000147!3.37e-07!14;CL:0000057!3.41e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000147;4.66e-16;14!CL:0000148;1.05e-11;10!CL:0000149;3.69e-10;4!CL:0002567;2.04e-08;3!CL:0002586;6.82e-08;3!CL:0000784;6.46e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,4.36e-16,14;CL:0000148,1.09e-11,10;CL:0000541,1.09e-11,10;CL:0000149,3.21e-10,4;CL:0002567,2.05e-08,3;CL:0002586,5.91e-08,3;CL:0000784,7.18e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.39e-14;9!UBERON:0001557;1.39e-14;9!UBERON:0000966;4.93e-08;5!UBERON:0005388;4.93e-08;5!UBERON:0001802;4.93e-08;5!UBERON:0001781;6.82e-08;3!UBERON:0001782;6.82e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.86e-15,9;UBERON:0001782,5.91e-08,3;UBERON:0005424,5.91e-08,3;UBERON:0001557,7.95e-08,19 | |||
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| |||
|short_description=p3@ST3GAL4 | |||
}} |
Revision as of 16:31, 10 September 2013
Short description: | p3@ST3GAL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ST3GAL4_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 31bp_to_ENST00000534083_5end |
EntrezGene: | ST3GAL4 |
HGNC: | 10864 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 4.36e-16 | 14 |
melanocyte | 1.09e-11 | 10 |
melanoblast | 1.09e-11 | 10 |
visual pigment cell | 3.21e-10 | 4 |
light melanocyte | 2.05e-08 | 3 |
retinal pigment epithelial cell | 5.91e-08 | 3 |
plasmacytoid dendritic cell | 7.18e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.86e-15 | 9 |
pigmented layer of retina | 5.91e-08 | 3 |
presumptive retinal pigmented epithelium | 5.91e-08 | 3 |
upper respiratory tract | 7.95e-08 | 19 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.