FFCP PHASE1:Hg19::chr12:96389702..96389722,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3034|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4806|TSSclassifier=S|UniProt=F8VNX0|association_with_transcript=0bp_to_ENST00000552509_5end|coexpression_cluster_id=C129|description=CAGE_peak_1_at_HAL_5end|id=chr12:96389702..96389722,-|ontology_enrichment_celltype=CL:0002057!3.17e-25!42;CL:0000766!4.22e-23!76;CL:0000860!6.58e-23!45;CL:0000763!2.09e-18!112;CL:0000049!2.09e-18!112;CL:0002194!5.50e-17!63;CL:0000576!5.50e-17!63;CL:0000040!5.50e-17!63;CL:0000559!5.50e-17!63;CL:0002009!3.56e-16!65;CL:0000839!2.32e-14!70;CL:0000738!2.44e-14!140;CL:0000557!4.98e-14!71;CL:0000094!1.19e-13!8;CL:0000037!2.86e-13!172;CL:0000566!2.86e-13!172;CL:0002032!3.08e-12!165;CL:0000837!3.08e-12!165;CL:0000988!9.99e-12!182;CL:0002087!1.19e-10!119;CL:0002393!1.44e-10!9;CL:0002397!1.44e-10!9;CL:0000081!2.14e-09!11;CL:0002031!8.14e-08!124|ontology_enrichment_celltype_v019=CL:0000094;5.56e-19;8!CL:0000081;1.72e-13;11!CL:0000775;1.07e-10;3!CL:0000875;2.38e-09;3!CL:0002396;2.38e-09;3!CL:0000576;4.34e-08;48!CL:0000766;5.59e-08;69!CL:0000771;8.66e-08;2|ontology_enrichment_celltype_v019_2=CL:0000094,7.51e-19,8;CL:0000766,6.04e-17,72;CL:0000860,1.84e-13,42;CL:0002057,1.84e-13,42;CL:0000081,2.13e-13,11;CL:0000763,1.66e-11,108;CL:0000049,1.66e-11,108;CL:0000473,2.59e-11,48;CL:0000234,2.59e-11,48;CL:0002393,5.05e-11,9;CL:0002397,5.05e-11,9;CL:0000775,1.07e-10,3;CL:0000738,2.14e-10,136;CL:0000875,1.34e-09,3;CL:0002396,1.34e-09,3;CL:0002194,1.37e-09,59;CL:0000576,1.37e-09,59;CL:0000040,1.37e-09,59;CL:0000559,1.37e-09,59;CL:0002009,3.70e-09,61;CL:0000037,1.12e-08,168;CL:0000839,3.41e-08,66;CL:0000557,5.10e-08,67;CL:0000988,6.95e-08,177;CL:0002032,7.66e-08,161;CL:0000837,7.66e-08,161;CL:0000771,8.68e-08,2|ontology_enrichment_development_v019=CL:0002057;1.82e-09;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!7.97e-22!102;UBERON:0003061!7.97e-22!102;UBERON:0002193!9.69e-20!112;UBERON:0002405!1.21e-15!115;UBERON:0000178!1.67e-14!15;UBERON:0000179!1.67e-14!15;UBERON:0000463!1.67e-14!15;UBERON:0002371!1.90e-11!80;UBERON:0001474!4.77e-10!86;UBERON:0004765!2.39e-07!101;UBERON:0001434!2.39e-07!101|ontology_enrichment_uberon_v019=UBERON:0000178;9.36e-23;15!UBERON:0000179;9.36e-23;15!UBERON:0000463;9.36e-23;15!UBERON:0002390;1.15e-10;32!UBERON:0000007;2.98e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.42e-22,15;UBERON:0000179,1.42e-22,15;UBERON:0000463,1.42e-22,15;UBERON:0002390,2.89e-17,98;UBERON:0003061,2.89e-17,98;UBERON:0002193,2.74e-16,108;UBERON:0000007,2.98e-07,2;UBERON:0007499,4.90e-07,25|phase1_expression=0,0,0,0,0,0,0,0,0,2.45733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36018566109342,1.15148819429164,0.619264493264304,0,0,0,0,0,0,2.21598163412751,0.802177789880567,0.434021741431704,0,0,0,0.872389432677388,0,1.4555043671269,0.929716147622738,0,0,1.43846196161075,0.512321413058201,0.236482229888585,1.72372840368309,0,1.35426486594342,0.941211697713023,0,0.674170453335254,0.612167784741805,0,1.27867425159808,0.989553900560148,0.199463657621632,0.426224750532694,0,1.13477044938228,0.622822248995575,0,0,0,0,1.47311054395026,0.949387162322653,0,1.06302149982522,1.25795187305026,1.68492946719743,2.4028302854641,1.44653028027372,1.99508920618874,3.77941686678271,1.46131323011707,0,1.09227722252426,0,0.853460445133014,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.127986611154418,0,1.4206635122641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3560834872127,19.3890132074163,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,282.663727652683,33.4161253670393,275.898886420216,0,5.53447973444011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2271615507852,14.9580729602012,13.6757119433892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.2942852049117,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2632051389738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.1538175042603,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.3958460260427,0,0,0,0,9.13405696617905,8.41100927856613,10.2536493691349,3.33524485640905,2.87953591160336,9.07862635669804,7.56044012133361,2.37937552888281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642352300414798,1.21079824314629,7.66523227842587,0.687010689511529,0.307240764308458,1.78940886313933,0.500547425135725,0.976940477010201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81284261649436,0,0,0,0,0,0,0,0,2.50629644545853,0.511572370226872,0,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0.718061155278177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0,0,0,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.86661500537946,0.906574442192831,1.75249214020881,0,0,0,0,0,0,0,0,0,0,0,0,0.314727528809989,0,3.94432146532259,0,0,0,0,0,0,0,0,0,0,0,116.655578007754,795.041333473328,0,0,0.342173675768659,0,0.427149650270779,0.78602152549833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0.320075189082423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0.0675375846183947,0,0,0,0,0,7.93937885422871,0,0,0,0,3.64179362541979,3.41493287026946,0.177404740325278,0,0.342976018874837,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,15.20771255991,0,0,0,0,0,0,0,6.82318133966533,0,0,0,0,0,10.6856418473011,1.40363678077263,0,0,0,0,7.09525364763366,0,0.437119121007915,0.940634592723046,0,0,0,0,0.4226557275834,0,0.657887425858975,1.48253142339228,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.426467963801962,0,0,0.31037357147929,0,0.12729431655633,0,1.30630048738177,0,1.41439311330634,2.94061042109973,0,0,0,0,0.0898252021065869,2.34640942403454,1.58913877437726,0,0,0,0|short_description=p1@HAL}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3034 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4806 | |||
|TSSclassifier=S | |||
|UniProt=F8VNX0 | |||
|association_with_transcript=0bp_to_ENST00000552509_5end | |||
|coexpression_cluster_id=C129 | |||
|description=CAGE_peak_1_at_HAL_5end | |||
|id=chr12:96389702..96389722,- | |||
|ontology_enrichment_celltype=CL:0002057!3.17e-25!42;CL:0000766!4.22e-23!76;CL:0000860!6.58e-23!45;CL:0000763!2.09e-18!112;CL:0000049!2.09e-18!112;CL:0002194!5.50e-17!63;CL:0000576!5.50e-17!63;CL:0000040!5.50e-17!63;CL:0000559!5.50e-17!63;CL:0002009!3.56e-16!65;CL:0000839!2.32e-14!70;CL:0000738!2.44e-14!140;CL:0000557!4.98e-14!71;CL:0000094!1.19e-13!8;CL:0000037!2.86e-13!172;CL:0000566!2.86e-13!172;CL:0002032!3.08e-12!165;CL:0000837!3.08e-12!165;CL:0000988!9.99e-12!182;CL:0002087!1.19e-10!119;CL:0002393!1.44e-10!9;CL:0002397!1.44e-10!9;CL:0000081!2.14e-09!11;CL:0002031!8.14e-08!124 | |||
|ontology_enrichment_celltype_v019=CL:0000094;5.56e-19;8!CL:0000081;1.72e-13;11!CL:0000775;1.07e-10;3!CL:0000875;2.38e-09;3!CL:0002396;2.38e-09;3!CL:0000576;4.34e-08;48!CL:0000766;5.59e-08;69!CL:0000771;8.66e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,7.51e-19,8;CL:0000766,6.04e-17,72;CL:0000860,1.84e-13,42;CL:0002057,1.84e-13,42;CL:0000081,2.13e-13,11;CL:0000763,1.66e-11,108;CL:0000049,1.66e-11,108;CL:0000473,2.59e-11,48;CL:0000234,2.59e-11,48;CL:0002393,5.05e-11,9;CL:0002397,5.05e-11,9;CL:0000775,1.07e-10,3;CL:0000738,2.14e-10,136;CL:0000875,1.34e-09,3;CL:0002396,1.34e-09,3;CL:0002194,1.37e-09,59;CL:0000576,1.37e-09,59;CL:0000040,1.37e-09,59;CL:0000559,1.37e-09,59;CL:0002009,3.70e-09,61;CL:0000037,1.12e-08,168;CL:0000839,3.41e-08,66;CL:0000557,5.10e-08,67;CL:0000988,6.95e-08,177;CL:0002032,7.66e-08,161;CL:0000837,7.66e-08,161;CL:0000771,8.68e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002057;1.82e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.97e-22!102;UBERON:0003061!7.97e-22!102;UBERON:0002193!9.69e-20!112;UBERON:0002405!1.21e-15!115;UBERON:0000178!1.67e-14!15;UBERON:0000179!1.67e-14!15;UBERON:0000463!1.67e-14!15;UBERON:0002371!1.90e-11!80;UBERON:0001474!4.77e-10!86;UBERON:0004765!2.39e-07!101;UBERON:0001434!2.39e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.36e-23;15!UBERON:0000179;9.36e-23;15!UBERON:0000463;9.36e-23;15!UBERON:0002390;1.15e-10;32!UBERON:0000007;2.98e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.42e-22,15;UBERON:0000179,1.42e-22,15;UBERON:0000463,1.42e-22,15;UBERON:0002390,2.89e-17,98;UBERON:0003061,2.89e-17,98;UBERON:0002193,2.74e-16,108;UBERON:0000007,2.98e-07,2;UBERON:0007499,4.90e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.45733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36018566109342,1.15148819429164,0.619264493264304,0,0,0,0,0,0,2.21598163412751,0.802177789880567,0.434021741431704,0,0,0,0.872389432677388,0,1.4555043671269,0.929716147622738,0,0,1.43846196161075,0.512321413058201,0.236482229888585,1.72372840368309,0,1.35426486594342,0.941211697713023,0,0.674170453335254,0.612167784741805,0,1.27867425159808,0.989553900560148,0.199463657621632,0.426224750532694,0,1.13477044938228,0.622822248995575,0,0,0,0,1.47311054395026,0.949387162322653,0,1.06302149982522,1.25795187305026,1.68492946719743,2.4028302854641,1.44653028027372,1.99508920618874,3.77941686678271,1.46131323011707,0,1.09227722252426,0,0.853460445133014,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.127986611154418,0,1.4206635122641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3560834872127,19.3890132074163,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,282.663727652683,33.4161253670393,275.898886420216,0,5.53447973444011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2271615507852,14.9580729602012,13.6757119433892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.2942852049117,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2632051389738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.1538175042603,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.3958460260427,0,0,0,0,9.13405696617905,8.41100927856613,10.2536493691349,3.33524485640905,2.87953591160336,9.07862635669804,7.56044012133361,2.37937552888281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642352300414798,1.21079824314629,7.66523227842587,0.687010689511529,0.307240764308458,1.78940886313933,0.500547425135725,0.976940477010201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81284261649436,0,0,0,0,0,0,0,0,2.50629644545853,0.511572370226872,0,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0.718061155278177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0,0,0,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.86661500537946,0.906574442192831,1.75249214020881,0,0,0,0,0,0,0,0,0,0,0,0,0.314727528809989,0,3.94432146532259,0,0,0,0,0,0,0,0,0,0,0,116.655578007754,795.041333473328,0,0,0.342173675768659,0,0.427149650270779,0.78602152549833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0.320075189082423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0.0675375846183947,0,0,0,0,0,7.93937885422871,0,0,0,0,3.64179362541979,3.41493287026946,0.177404740325278,0,0.342976018874837,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,15.20771255991,0,0,0,0,0,0,0,6.82318133966533,0,0,0,0,0,10.6856418473011,1.40363678077263,0,0,0,0,7.09525364763366,0,0.437119121007915,0.940634592723046,0,0,0,0,0.4226557275834,0,0.657887425858975,1.48253142339228,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.426467963801962,0,0,0.31037357147929,0,0.12729431655633,0,1.30630048738177,0,1.41439311330634,2.94061042109973,0,0,0,0,0.0898252021065869,2.34640942403454,1.58913877437726,0,0,0,0 | |||
|short_description=p1@HAL | |||
}} |
Revision as of 01:07, 11 September 2013
Short description: | p1@HAL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_HAL_5end |
Coexpression cluster: | C129_liver_Hepatocyte_colon_duodenum_temporal_testicular_small |
Association with transcript: | 0bp_to_ENST00000552509_5end |
EntrezGene: | HAL |
HGNC: | 4806 |
UniProt: | F8VNX0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 7.51e-19 | 8 |
myeloid leukocyte | 6.04e-17 | 72 |
classical monocyte | 1.84e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.84e-13 | 42 |
blood cell | 2.13e-13 | 11 |
myeloid cell | 1.66e-11 | 108 |
common myeloid progenitor | 1.66e-11 | 108 |
defensive cell | 2.59e-11 | 48 |
phagocyte | 2.59e-11 | 48 |
intermediate monocyte | 5.05e-11 | 9 |
CD14-positive, CD16-positive monocyte | 5.05e-11 | 9 |
neutrophil | 1.07e-10 | 3 |
leukocyte | 2.14e-10 | 136 |
non-classical monocyte | 1.34e-09 | 3 |
CD14-low, CD16-positive monocyte | 1.34e-09 | 3 |
monopoietic cell | 1.37e-09 | 59 |
monocyte | 1.37e-09 | 59 |
monoblast | 1.37e-09 | 59 |
promonocyte | 1.37e-09 | 59 |
macrophage dendritic cell progenitor | 3.70e-09 | 61 |
hematopoietic stem cell | 1.12e-08 | 168 |
myeloid lineage restricted progenitor cell | 3.41e-08 | 66 |
granulocyte monocyte progenitor cell | 5.10e-08 | 67 |
hematopoietic cell | 6.95e-08 | 177 |
hematopoietic oligopotent progenitor cell | 7.66e-08 | 161 |
hematopoietic multipotent progenitor cell | 7.66e-08 | 161 |
eosinophil | 8.68e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.42e-22 | 15 |
haemolymphatic fluid | 1.42e-22 | 15 |
organism substance | 1.42e-22 | 15 |
hematopoietic system | 2.89e-17 | 98 |
blood island | 2.89e-17 | 98 |
hemolymphoid system | 2.74e-16 | 108 |
pituitary gland | 2.98e-07 | 2 |
epithelial sac | 4.90e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.