FFCP PHASE1:Hg19::chr12:109116757..109116789,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C3232|description=CAGE_peak_at_chr12:109116757..109116789,-|id=chr12:109116757..109116789,-|ontology_enrichment_celltype=CL:0000055!9.07e-31!180;CL:0000057!6.88e-25!75;CL:0000144!3.19e-17!625;CL:0002620!3.44e-17!23;CL:0000048!1.38e-16!430;CL:0002371!1.73e-16!591;CL:0000548!7.98e-16!679;CL:0000004!7.98e-16!679;CL:0000255!7.98e-16!679;CL:0000723!9.46e-16!436;CL:0000012!1.75e-15!682;CL:0000034!1.11e-14!444;CL:0000680!2.37e-11!57;CL:0000056!2.37e-11!57;CL:0000355!2.37e-11!57;CL:0000003!3.23e-11!722;CL:0000187!1.30e-09!54;CL:0000192!7.50e-09!42;CL:0000514!7.50e-09!42;CL:0000183!9.10e-09!59;CL:0000393!2.46e-08!60;CL:0000211!2.46e-08!60;CL:0000219!7.49e-08!390;CL:0002320!8.81e-08!365;CL:0000134!8.87e-08!358;CL:0002334!8.92e-08!12;CL:0000359!2.08e-07!32;CL:0000222!7.57e-07!119|ontology_enrichment_celltype_v019=CL:0002620;6.99e-10;23!CL:0002580;1.99e-07;3!CL:0000515;1.99e-07;3!CL:0002494;3.89e-07;16|ontology_enrichment_celltype_v019_2=CL:0000057,1.41e-14,76;CL:0002620,8.52e-10,23;CL:0000048,9.90e-09,427;CL:0000723,1.68e-08,433;CL:0000034,3.31e-08,441;CL:0002580,1.87e-07,3;CL:0002494,3.85e-07,16|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!6.31e-08!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!3.81e-15!83;UBERON:0002329!3.81e-15!83;UBERON:0003077!3.81e-15!83;UBERON:0003059!3.81e-15!83;UBERON:0007282!3.81e-15!83;UBERON:0009618!3.81e-15!83;UBERON:0007285!3.81e-15!83;UBERON:0004290!4.94e-13!70;UBERON:0000486!5.48e-12!82;UBERON:0005256!7.76e-11!143;UBERON:0001134!6.49e-10!61;UBERON:0002036!6.49e-10!61;UBERON:0003082!6.49e-10!61;UBERON:0002385!2.83e-09!63;UBERON:0001015!2.83e-09!63;UBERON:0000383!2.83e-09!63;UBERON:0002199!6.27e-09!45;UBERON:0002416!6.27e-09!45;UBERON:0002097!6.37e-09!40;UBERON:0002204!5.00e-08!167;UBERON:0002384!7.78e-08!375;UBERON:0002100!2.54e-07!216;UBERON:0003102!3.04e-07!95|ontology_enrichment_uberon_v019=UBERON:0004573;2.83e-07;33!UBERON:0004571;2.83e-07;33!UBERON:0002097;5.04e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0002199,7.58e-09,46;UBERON:0002416,7.58e-09,46;UBERON:0002097,2.76e-08,41;UBERON:0004573,3.65e-08,33;UBERON:0004571,3.65e-08,33;UBERON:0001637,1.04e-07,42;UBERON:0003509,1.04e-07,42;UBERON:0004572,1.04e-07,42;UBERON:0004872,5.84e-07,83|phase1_expression=0.363356758541113,0.214100523890983,0.422863212287913,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0,0,0.247532705920093,0,1.34465029290355,0.602694528023977,0,1.46379839637152,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0.929119112685311,0,0.256160706529101,0.47296445977717,0.689491361473237,0,2.70852973188684,0.188242339542605,0.545812300115692,0.674170453335254,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0.434377689410233,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.12663051166458,13.5057364429483,1.14734648299525,0,1.12135520028461,1.06748995729705,0.24666754841716,0,0,0.163461903113459,0,0,0,0.624320153660641,0.570471821544449,0.747243402759005,0.469737994575059,0.323745888736263,0.280901613404497,0.61246251376468,0.245668634623536,0.206651562351531,0,0,0.910161361938026,0.718618141816238,0.168336113954066,0.500474079487857,2.49357703935765,0,0.612975591598039,0.150238058906597,0.113432183160021,5.202299434977,0.640672166455702,0.847727604638247,3.90118424909723,0.824420233907511,3.09168648054755,0.558350568994769,2.53164498361899,0.292311015483596,2.52433774244115,1.01254888506529,0,5.68015348026583,0.806016785821122,0.847802961552438,0.193260853163297,0.272746120590835,0.286804595389004,0,0,0,0,0,0,3.12899064659632,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0,0,0,0,0,0,0,0,0.503946384596579,0.283550194484773,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0.300343057843917,0,0.224262168690721,0,0.22001485746285,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.57191197463259,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0.718874566474748,0,0,2.89562613335158,0.205476322550383,1.07436577943937,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0.535286966391485,0.157702415033935,0.35142424497814,0,0,0,1.32845119707087,0.184369168541703,0.347534457872331,0.391602314925481,0,0,0,0,0.606255142892519,0,0,1.48864684691266,2.455391572609,0,0.512556597022804,0.511707249066704,0.321707842287215,0,0.462629081407967,1.065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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3232 | |||
|description=CAGE_peak_at_chr12:109116757..109116789,- | |||
|id=chr12:109116757..109116789,- | |||
|ontology_enrichment_celltype=CL:0000055!9.07e-31!180;CL:0000057!6.88e-25!75;CL:0000144!3.19e-17!625;CL:0002620!3.44e-17!23;CL:0000048!1.38e-16!430;CL:0002371!1.73e-16!591;CL:0000548!7.98e-16!679;CL:0000004!7.98e-16!679;CL:0000255!7.98e-16!679;CL:0000723!9.46e-16!436;CL:0000012!1.75e-15!682;CL:0000034!1.11e-14!444;CL:0000680!2.37e-11!57;CL:0000056!2.37e-11!57;CL:0000355!2.37e-11!57;CL:0000003!3.23e-11!722;CL:0000187!1.30e-09!54;CL:0000192!7.50e-09!42;CL:0000514!7.50e-09!42;CL:0000183!9.10e-09!59;CL:0000393!2.46e-08!60;CL:0000211!2.46e-08!60;CL:0000219!7.49e-08!390;CL:0002320!8.81e-08!365;CL:0000134!8.87e-08!358;CL:0002334!8.92e-08!12;CL:0000359!2.08e-07!32;CL:0000222!7.57e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.99e-10;23!CL:0002580;1.99e-07;3!CL:0000515;1.99e-07;3!CL:0002494;3.89e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.41e-14,76;CL:0002620,8.52e-10,23;CL:0000048,9.90e-09,427;CL:0000723,1.68e-08,433;CL:0000034,3.31e-08,441;CL:0002580,1.87e-07,3;CL:0002494,3.85e-07,16 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!6.31e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.81e-15!83;UBERON:0002329!3.81e-15!83;UBERON:0003077!3.81e-15!83;UBERON:0003059!3.81e-15!83;UBERON:0007282!3.81e-15!83;UBERON:0009618!3.81e-15!83;UBERON:0007285!3.81e-15!83;UBERON:0004290!4.94e-13!70;UBERON:0000486!5.48e-12!82;UBERON:0005256!7.76e-11!143;UBERON:0001134!6.49e-10!61;UBERON:0002036!6.49e-10!61;UBERON:0003082!6.49e-10!61;UBERON:0002385!2.83e-09!63;UBERON:0001015!2.83e-09!63;UBERON:0000383!2.83e-09!63;UBERON:0002199!6.27e-09!45;UBERON:0002416!6.27e-09!45;UBERON:0002097!6.37e-09!40;UBERON:0002204!5.00e-08!167;UBERON:0002384!7.78e-08!375;UBERON:0002100!2.54e-07!216;UBERON:0003102!3.04e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.83e-07;33!UBERON:0004571;2.83e-07;33!UBERON:0002097;5.04e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,7.58e-09,46;UBERON:0002416,7.58e-09,46;UBERON:0002097,2.76e-08,41;UBERON:0004573,3.65e-08,33;UBERON:0004571,3.65e-08,33;UBERON:0001637,1.04e-07,42;UBERON:0003509,1.04e-07,42;UBERON:0004572,1.04e-07,42;UBERON:0004872,5.84e-07,83 | |||
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| |||
|short_description=p@chr12:109116757..109116789,- | |||
}} |
Revision as of 20:44, 10 September 2013
Short description: | p@chr12:109116757..109116789, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:109116757..109116789, - |
Coexpression cluster: | C3232_Fibroblast_Smooth_leiomyoma_mesenchymal_nonsmall_Myoblast_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.41e-14 | 76 |
skin fibroblast | 8.52e-10 | 23 |
multi fate stem cell | 9.90e-09 | 427 |
somatic stem cell | 1.68e-08 | 433 |
stem cell | 3.31e-08 | 441 |
preadipocyte of the breast | 1.87e-07 | 3 |
cardiocyte | 3.85e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
integument | 7.58e-09 | 46 |
integumental system | 7.58e-09 | 46 |
skin of body | 2.76e-08 | 41 |
systemic artery | 3.65e-08 | 33 |
systemic arterial system | 3.65e-08 | 33 |
artery | 1.04e-07 | 42 |
arterial blood vessel | 1.04e-07 | 42 |
arterial system | 1.04e-07 | 42 |
splanchnic layer of lateral plate mesoderm | 5.84e-07 | 83 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.