FFCP PHASE1:Hg19::chr12:125399403..125399469,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7316|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12468|TSSclassifier=S|UniProt=F5H041|association_with_transcript=8bp_to_ENST00000541046_5end|description=CAGE_peak_2_at_UBC_5end|id=chr12:125399403..125399469,-|ontology_enrichment_celltype=CL:0000548!4.27e-22!679;CL:0000004!4.27e-22!679;CL:0000255!4.27e-22!679;CL:0000144!1.20e-21!625;CL:0000012!2.71e-21!682;CL:0002371!4.35e-18!591;CL:0000003!1.38e-15!722;CL:0002321!2.42e-10!248;CL:0000222!4.07e-10!119;CL:0002057!4.48e-10!42;CL:0000220!6.93e-10!246;CL:0000063!7.38e-10!578;CL:0000055!9.81e-09!180;CL:0000860!4.59e-08!45;CL:0000034!2.16e-07!444;CL:0002139!3.34e-07!24;CL:0000723!6.65e-07!436;CL:0000076!6.67e-07!62;CL:0000048!9.03e-07!430|ontology_enrichment_celltype_v019=CL:0000860;5.31e-08;33!CL:0002057;5.31e-08;33!CL:0002139;4.42e-07;24|ontology_enrichment_celltype_v019_2=CL:0002321,2.23e-10,250;CL:0000222,4.19e-10,121;CL:0000860,4.22e-10,42;CL:0002057,4.22e-10,42;CL:0000473,2.69e-09,48;CL:0000234,2.69e-09,48;CL:0000766,3.49e-08,72;CL:0000034,1.05e-07,441;CL:0002009,2.27e-07,61;CL:0000076,2.73e-07,63;CL:0002139,3.21e-07,24;CL:0002194,3.44e-07,59;CL:0000576,3.44e-07,59;CL:0000040,3.44e-07,59;CL:0000559,3.44e-07,59;CL:0000723,3.54e-07,433;CL:0000048,4.84e-07,427|ontology_enrichment_development_v019=CL:0002057;2.48e-07;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002049!5.90e-09!79;UBERON:0007798!5.90e-09!79;UBERON:0003081!1.68e-08!216;UBERON:0004535!1.82e-08!110;UBERON:0000055!3.35e-08!69;UBERON:0001637!4.57e-08!42;UBERON:0003509!4.57e-08!42;UBERON:0004572!4.57e-08!42;UBERON:0000926!4.78e-08!448;UBERON:0004120!4.78e-08!448;UBERON:0006603!4.78e-08!448;UBERON:0001009!5.57e-08!113;UBERON:0004872!6.40e-08!84;UBERON:0001981!1.05e-07!60;UBERON:0007500!1.05e-07!60;UBERON:0004537!1.05e-07!60;UBERON:0006965!1.05e-07!60;UBERON:0002204!2.16e-07!167|ontology_enrichment_uberon_v019=UBERON:0001637;9.90e-07;42!UBERON:0003509;9.90e-07;42!UBERON:0004572;9.90e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.58e-14,315;UBERON:0004120,1.58e-14,315;UBERON:0006603,1.58e-14,315;UBERON:0003081,4.45e-10,203;UBERON:0002049,1.34e-09,78;UBERON:0007798,1.34e-09,78;UBERON:0004535,6.19e-09,109;UBERON:0000055,7.42e-09,68;UBERON:0002204,8.54e-09,167;UBERON:0004872,1.60e-08,83;UBERON:0001009,2.00e-08,112;UBERON:0007500,2.04e-08,59;UBERON:0001981,2.04e-08,59;UBERON:0004537,2.04e-08,59;UBERON:0006965,2.04e-08,59;UBERON:0001637,4.36e-08,42;UBERON:0003509,4.36e-08,42;UBERON:0004572,4.36e-08,42|phase1_expression=1.63510541343501,2.99740733447376,4.51054093107108,3.00219895059391,3.5756887554183,0.872338524100369,5.06599756336621,4.42203911398782,2.35067065379855,6.63481628554074,0,3.49506195408276,3.16520373874144,9.15871011904345,3.31397375727916,2.01697543935533,1.80808358407193,5.11217063271161,4.39139518911456,3.57051068422685,1.83600622119828,1.56727360739044,6.29719171688325,6.70684682857133,3.64073654824928,3.20936304141395,3.20192298854788,3.69940672174292,7.47392126012918,3.83829398097213,6.81190942590734,5.51652734687356,9.0361775633475,4.80680213216824,3.79589282843478,2.84338464974843,1.17440175733939,4.9859586767869,6.41742231904453,4.77423915574874,1.79132379391939,3.2389366601898,2.31818010870768,6.97911546141911,3.02300754951048,3.39617685662943,7.43772918098191,5.75635043230556,20.1309141081817,6.61692502340946,3.33008918487831,9.69577142543199,15.8583013138845,16.7826017731795,28.4395621848118,9.22387463758763,7.36846605156184,8.09004544002305,7.03992952453076,4.8139354061414,1.91801137739712,4.28806690242731,2.79249120670285,4.26224750532694,5.80418477257168,3.97169657283798,3.73693349397345,14.5724225848911,10.9511412868242,18.4610517999349,3.63239701580021,9.57521853567668,7.27863491114034,5.91514801673437,3.61427309940574,2.51590374610051,5.05478840159228,3.60424542819615,3.85741408072992,4.56020389985998,4.57508357557907,4.20127553658658,0,0.546138611262131,1.77901850772711,2.13365111283254,0,0.574752439954483,0,0,0.569212969109448,2.34894875748376,1.91136614062614,0,1.68152568894461,2.10707267820062,1.57367816091066,0.786021525498329,0.822405995998037,1.5046784585161,0.977766799900771,1.4203434172042,0,3.11949279278486,2.06224135232386,1.10766947291811,1.62482318259009,1.66518715643378,1.30059347559878,0.822189523018381,0.552700035571697,1.73881851441031,0.296573126324121,0.802622484269139,1.04535523804977,1.92625882585863,0.383220493601921,0.68725489096526,0.759059076058509,0.637130828648193,0.651083453856419,0,1.35517607169996,0.511946444617674,0,0.473554504088034,0.821127996921047,1.81446068902259,0.267440195783507,0.434473211648397,2.43806866313962,6.03630773733273,5.11450247374121,2.53007406669196,3.50936537445123,1.73815822752988,3.1811437882044,1.94653948121054,6.14476311566441,3.76939975686359,4.0404001418838,12.0500749457896,1.45718115317017,0.741568885568859,2.92092654289215,1.74129737299267,1.06366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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7316 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12468 | |||
|TSSclassifier=S | |||
|UniProt=F5H041 | |||
|association_with_transcript=8bp_to_ENST00000541046_5end | |||
|description=CAGE_peak_2_at_UBC_5end | |||
|id=chr12:125399403..125399469,- | |||
|ontology_enrichment_celltype=CL:0000548!4.27e-22!679;CL:0000004!4.27e-22!679;CL:0000255!4.27e-22!679;CL:0000144!1.20e-21!625;CL:0000012!2.71e-21!682;CL:0002371!4.35e-18!591;CL:0000003!1.38e-15!722;CL:0002321!2.42e-10!248;CL:0000222!4.07e-10!119;CL:0002057!4.48e-10!42;CL:0000220!6.93e-10!246;CL:0000063!7.38e-10!578;CL:0000055!9.81e-09!180;CL:0000860!4.59e-08!45;CL:0000034!2.16e-07!444;CL:0002139!3.34e-07!24;CL:0000723!6.65e-07!436;CL:0000076!6.67e-07!62;CL:0000048!9.03e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.31e-08;33!CL:0002057;5.31e-08;33!CL:0002139;4.42e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.23e-10,250;CL:0000222,4.19e-10,121;CL:0000860,4.22e-10,42;CL:0002057,4.22e-10,42;CL:0000473,2.69e-09,48;CL:0000234,2.69e-09,48;CL:0000766,3.49e-08,72;CL:0000034,1.05e-07,441;CL:0002009,2.27e-07,61;CL:0000076,2.73e-07,63;CL:0002139,3.21e-07,24;CL:0002194,3.44e-07,59;CL:0000576,3.44e-07,59;CL:0000040,3.44e-07,59;CL:0000559,3.44e-07,59;CL:0000723,3.54e-07,433;CL:0000048,4.84e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;2.48e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!5.90e-09!79;UBERON:0007798!5.90e-09!79;UBERON:0003081!1.68e-08!216;UBERON:0004535!1.82e-08!110;UBERON:0000055!3.35e-08!69;UBERON:0001637!4.57e-08!42;UBERON:0003509!4.57e-08!42;UBERON:0004572!4.57e-08!42;UBERON:0000926!4.78e-08!448;UBERON:0004120!4.78e-08!448;UBERON:0006603!4.78e-08!448;UBERON:0001009!5.57e-08!113;UBERON:0004872!6.40e-08!84;UBERON:0001981!1.05e-07!60;UBERON:0007500!1.05e-07!60;UBERON:0004537!1.05e-07!60;UBERON:0006965!1.05e-07!60;UBERON:0002204!2.16e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;9.90e-07;42!UBERON:0003509;9.90e-07;42!UBERON:0004572;9.90e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.58e-14,315;UBERON:0004120,1.58e-14,315;UBERON:0006603,1.58e-14,315;UBERON:0003081,4.45e-10,203;UBERON:0002049,1.34e-09,78;UBERON:0007798,1.34e-09,78;UBERON:0004535,6.19e-09,109;UBERON:0000055,7.42e-09,68;UBERON:0002204,8.54e-09,167;UBERON:0004872,1.60e-08,83;UBERON:0001009,2.00e-08,112;UBERON:0007500,2.04e-08,59;UBERON:0001981,2.04e-08,59;UBERON:0004537,2.04e-08,59;UBERON:0006965,2.04e-08,59;UBERON:0001637,4.36e-08,42;UBERON:0003509,4.36e-08,42;UBERON:0004572,4.36e-08,42 | |||
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| |||
|short_description=p2@UBC | |||
}} |
Revision as of 21:37, 10 September 2013
Short description: | p2@UBC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_UBC_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000541046_5end |
EntrezGene: | UBC |
HGNC: | 12468 |
UniProt: | F5H041 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.23e-10 | 250 |
mesodermal cell | 4.19e-10 | 121 |
classical monocyte | 4.22e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.22e-10 | 42 |
defensive cell | 2.69e-09 | 48 |
phagocyte | 2.69e-09 | 48 |
myeloid leukocyte | 3.49e-08 | 72 |
stem cell | 1.05e-07 | 441 |
macrophage dendritic cell progenitor | 2.27e-07 | 61 |
squamous epithelial cell | 2.73e-07 | 63 |
endothelial cell of vascular tree | 3.21e-07 | 24 |
monopoietic cell | 3.44e-07 | 59 |
monocyte | 3.44e-07 | 59 |
monoblast | 3.44e-07 | 59 |
promonocyte | 3.44e-07 | 59 |
somatic stem cell | 3.54e-07 | 433 |
multi fate stem cell | 4.84e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.58e-14 | 315 |
mesoderm-derived structure | 1.58e-14 | 315 |
presumptive mesoderm | 1.58e-14 | 315 |
lateral plate mesoderm | 4.45e-10 | 203 |
vasculature | 1.34e-09 | 78 |
vascular system | 1.34e-09 | 78 |
cardiovascular system | 6.19e-09 | 109 |
vessel | 7.42e-09 | 68 |
musculoskeletal system | 8.54e-09 | 167 |
splanchnic layer of lateral plate mesoderm | 1.60e-08 | 83 |
circulatory system | 2.00e-08 | 112 |
epithelial tube open at both ends | 2.04e-08 | 59 |
blood vessel | 2.04e-08 | 59 |
blood vasculature | 2.04e-08 | 59 |
vascular cord | 2.04e-08 | 59 |
artery | 4.36e-08 | 42 |
arterial blood vessel | 4.36e-08 | 42 |
arterial system | 4.36e-08 | 42 |
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