FFCP PHASE1:Hg19::chr18:907687..907707,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1806|description=CAGE_peak_at_chr18:907687..907707,+|id=chr18:907687..907707,+|ontology_enrichment_celltype=CL:0000077!1.98e-10!19;CL:0000163!1.13e-08!9;CL:0002603!7.31e-08!3;CL:0002274!1.24e-07!5;CL:0000457!1.24e-07!5;CL:0002191!1.24e-07!5;CL:0000097!1.24e-07!5;CL:0000831!1.24e-07!5;CL:0002028!1.24e-07!5|ontology_enrichment_celltype_v019=CL:0002603;1.33e-19;3!CL:0000077;7.72e-16;19!CL:0000128;1.07e-08;7!CL:0000126;1.07e-08;7!CL:0000127;1.07e-08;7!CL:0000163;7.05e-07;9|ontology_enrichment_celltype_v019_2=CL:0002603,2.01e-19,3;CL:0000077,8.00e-16,19;CL:0000128,1.27e-08,7;CL:0000126,1.27e-08,7;CL:0000127,1.27e-08,7;CL:0002453,1.27e-08,7;CL:0000163,6.31e-07,9|ontology_enrichment_development_v019=UBERON:0006222;2.04e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.93e-27!57;UBERON:0005068!2.93e-27!57;UBERON:0006241!2.93e-27!57;UBERON:0007135!2.93e-27!57;UBERON:0005743!6.07e-26!86;UBERON:0002616!7.03e-26!59;UBERON:0000073!1.01e-25!94;UBERON:0001016!1.01e-25!94;UBERON:0003075!8.98e-25!86;UBERON:0007284!8.98e-25!86;UBERON:0002346!3.41e-23!90;UBERON:0001017!4.89e-23!82;UBERON:0000955!4.87e-22!69;UBERON:0006238!4.87e-22!69;UBERON:0004733!2.62e-16!12;UBERON:0002028!2.62e-16!12;UBERON:0007277!2.62e-16!12;UBERON:0002780!2.47e-15!41;UBERON:0001890!2.47e-15!41;UBERON:0006240!2.47e-15!41;UBERON:0003076!2.86e-15!15;UBERON:0003057!2.86e-15!15;UBERON:0004732!7.17e-15!13;UBERON:0003080!7.59e-15!42;UBERON:0002680!1.10e-14!9;UBERON:0001895!1.10e-14!9;UBERON:0010092!1.10e-14!9;UBERON:0007023!1.12e-13!115;UBERON:0003056!3.95e-13!61;UBERON:0000033!7.46e-13!123;UBERON:0004121!1.01e-12!169;UBERON:0000924!3.62e-12!173;UBERON:0006601!3.62e-12!173;UBERON:0000153!8.07e-12!129;UBERON:0007811!8.07e-12!129;UBERON:0001950!5.74e-11!20;UBERON:0001893!1.90e-10!34;UBERON:0002020!1.99e-10!34;UBERON:0003528!1.99e-10!34;UBERON:0001869!7.66e-10!32;UBERON:0002619!8.90e-10!22;UBERON:0002037!1.45e-09!6;UBERON:0006215!1.45e-09!6;UBERON:0002791!2.22e-09!33;UBERON:0000025!5.63e-09!194;UBERON:0000956!2.42e-08!25;UBERON:0000203!2.42e-08!25;UBERON:0001894!2.69e-07!7;UBERON:0006222!2.69e-07!7;UBERON:0000988!7.87e-07!3|ontology_enrichment_uberon_v019=UBERON:0002680;2.38e-11;9!UBERON:0001895;2.38e-11;9!UBERON:0002037;4.54e-10;6!UBERON:0004733;1.53e-08;12!UBERON:0002028;1.53e-08;12!UBERON:0004732;6.82e-08;13!UBERON:0001282;2.04e-07;1!UBERON:0009842;2.04e-07;1!UBERON:0003704;2.04e-07;1!UBERON:0001171;2.04e-07;1!UBERON:0001172;2.04e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002680,2.92e-11,9;UBERON:0001895,2.92e-11,9;UBERON:0010092,2.92e-11,9;UBERON:0002037,5.55e-10,6;UBERON:0006215,5.55e-10,6;UBERON:0004733,1.78e-08,12;UBERON:0002028,1.78e-08,12;UBERON:0007277,1.78e-08,12;UBERON:0004732,7.83e-08,13;UBERON:0001282,2.98e-07,1;UBERON:0009842,2.98e-07,1;UBERON:0003704,2.98e-07,1;UBERON:0001171,2.98e-07,1;UBERON:0001172,2.98e-07,1;UBERON:0003076,8.44e-07,15;UBERON:0003057,8.44e-07,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95490539384291,1.02000345622126,5.32873026512749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.880484340132261,3.52457796419313,1.58531948758658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,3.48613383440118,1.29964888536674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,2.55175500661265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0,0.256450125116389,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98565681822056,9.97896857164083,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0.774054819518572,0.591095237907095,0.219385397153973,0,0,0,1.02547850262301,0,0,0,0,0,0,0,0.31396051279005,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,1.1713222286267,0,0,0,0,1.20990716048664,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0.0801588202515337,0.213452994739353,0,0,0,3.77508995296322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.41351148331118,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,1.64185041498678,0,0.113312091520126,0.146552233678082,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0.221858103073705,0.372578417648301,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,4.07439023612359,12.5277260143302,5.66764813780681,0,0,0,0,8.55207793356958,0,0.964570191354574,2.36519416914302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53473245564382,6.03818943821418,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,1.41696576325585,0,0.205116364240755,0,0.345786262321089,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0.337687923091973,0,0,0.253663240775627,0,0,0,0,0,0,0.336283722218824,0,0.227662191351298,0,0,0,1.22345519358297,0.197318320688547,0,0,0,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0.173858272302579,0,0,0,0,0,0,0,0,1.3746412112643,0,0,0,0,0,0,0,0,0,2.80727356154527,0,0,0,0.109940516745429,12.3789531724672,0,0.437119121007915,0.470317296361523,0,0,0.392616934229891,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0,0,0.606229585745915,1.07185652062471,0.829169439458779,0.20686599172379,0,0,0,0,1.56984607612859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr18:907687..907707,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1806 | |||
|description=CAGE_peak_at_chr18:907687..907707,+ | |||
|id=chr18:907687..907707,+ | |||
|ontology_enrichment_celltype=CL:0000077!1.98e-10!19;CL:0000163!1.13e-08!9;CL:0002603!7.31e-08!3;CL:0002274!1.24e-07!5;CL:0000457!1.24e-07!5;CL:0002191!1.24e-07!5;CL:0000097!1.24e-07!5;CL:0000831!1.24e-07!5;CL:0002028!1.24e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002603;1.33e-19;3!CL:0000077;7.72e-16;19!CL:0000128;1.07e-08;7!CL:0000126;1.07e-08;7!CL:0000127;1.07e-08;7!CL:0000163;7.05e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,2.01e-19,3;CL:0000077,8.00e-16,19;CL:0000128,1.27e-08,7;CL:0000126,1.27e-08,7;CL:0000127,1.27e-08,7;CL:0002453,1.27e-08,7;CL:0000163,6.31e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0006222;2.04e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.93e-27!57;UBERON:0005068!2.93e-27!57;UBERON:0006241!2.93e-27!57;UBERON:0007135!2.93e-27!57;UBERON:0005743!6.07e-26!86;UBERON:0002616!7.03e-26!59;UBERON:0000073!1.01e-25!94;UBERON:0001016!1.01e-25!94;UBERON:0003075!8.98e-25!86;UBERON:0007284!8.98e-25!86;UBERON:0002346!3.41e-23!90;UBERON:0001017!4.89e-23!82;UBERON:0000955!4.87e-22!69;UBERON:0006238!4.87e-22!69;UBERON:0004733!2.62e-16!12;UBERON:0002028!2.62e-16!12;UBERON:0007277!2.62e-16!12;UBERON:0002780!2.47e-15!41;UBERON:0001890!2.47e-15!41;UBERON:0006240!2.47e-15!41;UBERON:0003076!2.86e-15!15;UBERON:0003057!2.86e-15!15;UBERON:0004732!7.17e-15!13;UBERON:0003080!7.59e-15!42;UBERON:0002680!1.10e-14!9;UBERON:0001895!1.10e-14!9;UBERON:0010092!1.10e-14!9;UBERON:0007023!1.12e-13!115;UBERON:0003056!3.95e-13!61;UBERON:0000033!7.46e-13!123;UBERON:0004121!1.01e-12!169;UBERON:0000924!3.62e-12!173;UBERON:0006601!3.62e-12!173;UBERON:0000153!8.07e-12!129;UBERON:0007811!8.07e-12!129;UBERON:0001950!5.74e-11!20;UBERON:0001893!1.90e-10!34;UBERON:0002020!1.99e-10!34;UBERON:0003528!1.99e-10!34;UBERON:0001869!7.66e-10!32;UBERON:0002619!8.90e-10!22;UBERON:0002037!1.45e-09!6;UBERON:0006215!1.45e-09!6;UBERON:0002791!2.22e-09!33;UBERON:0000025!5.63e-09!194;UBERON:0000956!2.42e-08!25;UBERON:0000203!2.42e-08!25;UBERON:0001894!2.69e-07!7;UBERON:0006222!2.69e-07!7;UBERON:0000988!7.87e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002680;2.38e-11;9!UBERON:0001895;2.38e-11;9!UBERON:0002037;4.54e-10;6!UBERON:0004733;1.53e-08;12!UBERON:0002028;1.53e-08;12!UBERON:0004732;6.82e-08;13!UBERON:0001282;2.04e-07;1!UBERON:0009842;2.04e-07;1!UBERON:0003704;2.04e-07;1!UBERON:0001171;2.04e-07;1!UBERON:0001172;2.04e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002680,2.92e-11,9;UBERON:0001895,2.92e-11,9;UBERON:0010092,2.92e-11,9;UBERON:0002037,5.55e-10,6;UBERON:0006215,5.55e-10,6;UBERON:0004733,1.78e-08,12;UBERON:0002028,1.78e-08,12;UBERON:0007277,1.78e-08,12;UBERON:0004732,7.83e-08,13;UBERON:0001282,2.98e-07,1;UBERON:0009842,2.98e-07,1;UBERON:0003704,2.98e-07,1;UBERON:0001171,2.98e-07,1;UBERON:0001172,2.98e-07,1;UBERON:0003076,8.44e-07,15;UBERON:0003057,8.44e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95490539384291,1.02000345622126,5.32873026512749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.880484340132261,3.52457796419313,1.58531948758658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,3.48613383440118,1.29964888536674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,2.55175500661265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0,0.256450125116389,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98565681822056,9.97896857164083,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0.774054819518572,0.591095237907095,0.219385397153973,0,0,0,1.02547850262301,0,0,0,0,0,0,0,0.31396051279005,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,1.1713222286267,0,0,0,0,1.20990716048664,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0.0801588202515337,0.213452994739353,0,0,0,3.77508995296322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.41351148331118,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,1.64185041498678,0,0.113312091520126,0.146552233678082,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0.221858103073705,0.372578417648301,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,4.07439023612359,12.5277260143302,5.66764813780681,0,0,0,0,8.55207793356958,0,0.964570191354574,2.36519416914302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53473245564382,6.03818943821418,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,1.41696576325585,0,0.205116364240755,0,0.345786262321089,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0.337687923091973,0,0,0.253663240775627,0,0,0,0,0,0,0.336283722218824,0,0.227662191351298,0,0,0,1.22345519358297,0.197318320688547,0,0,0,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0.173858272302579,0,0,0,0,0,0,0,0,1.3746412112643,0,0,0,0,0,0,0,0,0,2.80727356154527,0,0,0,0.109940516745429,12.3789531724672,0,0.437119121007915,0.470317296361523,0,0,0.392616934229891,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0,0,0.606229585745915,1.07185652062471,0.829169439458779,0.20686599172379,0,0,0,0,1.56984607612859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:907687..907707,+ | |||
}} |
Revision as of 18:25, 11 September 2013
Short description: | p@chr18:907687..907707, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:907687..907707, + |
Coexpression cluster: | C1806_acute_mesothelioma_small_neuroblastoma_Astrocyte_hepatoma_gastrointestinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 2.01e-19 | 3 |
mesothelial cell | 8.00e-16 | 19 |
oligodendrocyte | 1.27e-08 | 7 |
macroglial cell | 1.27e-08 | 7 |
astrocyte | 1.27e-08 | 7 |
oligodendrocyte precursor cell | 1.27e-08 | 7 |
endocrine cell | 6.31e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 2.92e-11 | 9 |
metencephalon | 2.92e-11 | 9 |
future metencephalon | 2.92e-11 | 9 |
cerebellum | 5.55e-10 | 6 |
rhombic lip | 5.55e-10 | 6 |
segmental subdivision of hindbrain | 1.78e-08 | 12 |
hindbrain | 1.78e-08 | 12 |
presumptive hindbrain | 1.78e-08 | 12 |
segmental subdivision of nervous system | 7.83e-08 | 13 |
intralobular bile duct | 2.98e-07 | 1 |
acinus | 2.98e-07 | 1 |
intrahepatic bile duct | 2.98e-07 | 1 |
portal lobule | 2.98e-07 | 1 |
hepatic acinus | 2.98e-07 | 1 |
posterior neural tube | 8.44e-07 | 15 |
chordal neural plate | 8.44e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.