FFCP PHASE1:Hg19::chr3:155455734..155455749,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:155455734..155455749,-|id=chr3:155455734..155455749,-|ontology_enrichment_celltype=CL:1000497!7.08e-12!18;CL:0002518!7.08e-12!18;CL:1000507!5.84e-11!12;CL:1000494!5.84e-11!12;CL:0000239!2.16e-09!3;CL:1000615!2.16e-09!3;CL:0002306!2.16e-09!3;CL:1000449!5.77e-08!16;CL:0002681!2.06e-07!13;CL:0002584!2.06e-07!13|ontology_enrichment_celltype_v019=CL:0002563;2.22e-08;4|ontology_enrichment_celltype_v019_2=CL:0002563,2.13e-08,4|ontology_enrichment_development_v019=UBERON:0003104;1.77e-14;31!UBERON:0003918;1.19e-12;10!UBERON:0007687;1.19e-12;10!UBERON:0009497;1.71e-09;13!UBERON:0006242;5.31e-09;1|ontology_enrichment_disease=DOID:305!3.42e-08!106;DOID:4468!2.53e-07!2;DOID:7!5.87e-07!39|ontology_enrichment_disease_v019=DOID:299;2.08e-07;25|ontology_enrichment_disease_v019_2=DOID:305,2.81e-08,106;DOID:299,2.21e-07,25|ontology_enrichment_uberon=UBERON:0001008!5.79e-17!45;UBERON:0005172!7.30e-17!55;UBERON:0005173!7.30e-17!55;UBERON:0002113!4.21e-16!27;UBERON:0003918!4.21e-16!27;UBERON:0005095!4.21e-16!27;UBERON:0007687!4.21e-16!27;UBERON:0005177!5.42e-16!107;UBERON:0006554!2.21e-15!44;UBERON:0000489!2.69e-15!32;UBERON:0002417!1.08e-14!61;UBERON:0000916!1.08e-14!61;UBERON:0004921!2.61e-14!129;UBERON:0004185!2.61e-14!129;UBERON:0000160!9.81e-14!27;UBERON:0001007!1.35e-12!155;UBERON:0001555!1.35e-12!155;UBERON:0007026!1.35e-12!155;UBERON:0000466!2.67e-12!126;UBERON:0009569!3.20e-12!113;UBERON:0003064!3.63e-12!37;UBERON:0005409!6.32e-12!35;UBERON:0004119!9.52e-12!169;UBERON:0000925!9.52e-12!169;UBERON:0006595!9.52e-12!169;UBERON:0000080!1.10e-11!18;UBERON:0002120!1.10e-11!18;UBERON:0004875!1.10e-11!18;UBERON:0005721!1.10e-11!18;UBERON:0005754!1.10e-11!18;UBERON:0007297!1.10e-11!18;UBERON:0000058!1.13e-11!26;UBERON:0009773!5.84e-11!12;UBERON:0001231!5.84e-11!12;UBERON:0004810!5.84e-11!12;UBERON:0004876!2.41e-10!20;UBERON:0006947!2.62e-10!3;UBERON:0004054!2.62e-10!3;UBERON:0003104!5.30e-10!238;UBERON:0009142!5.30e-10!238;UBERON:0006555!6.89e-10!17;UBERON:0005103!6.89e-10!17;UBERON:0000083!6.89e-10!17;UBERON:0009201!6.89e-10!17;UBERON:0004819!6.89e-10!17;UBERON:0006553!6.89e-10!17;UBERON:0003074!6.89e-10!17;UBERON:0003060!6.89e-10!17;UBERON:0000059!8.69e-10!11;UBERON:0003887!9.01e-10!21;UBERON:0000077!1.36e-09!130;UBERON:0006853!2.16e-09!3;UBERON:0007685!2.16e-09!3;UBERON:0004134!2.16e-09!3;UBERON:0000464!3.50e-09!104;UBERON:0000481!5.16e-09!347;UBERON:0007023!1.04e-08!115;UBERON:0002100!1.05e-08!216;UBERON:0001155!1.25e-08!9;UBERON:0001046!1.53e-08!19;UBERON:0003886!3.02e-08!63;UBERON:0002553!4.01e-08!70;UBERON:0004175!4.88e-08!25;UBERON:0004211!5.77e-08!16;UBERON:0001285!5.77e-08!16;UBERON:0007684!5.77e-08!16;UBERON:0003220!5.77e-08!16;UBERON:0004208!5.77e-08!16;UBERON:0005904!8.15e-08!4;UBERON:0001225!2.06e-07!13;UBERON:0008987!2.06e-07!13;UBERON:0005911!2.52e-07!82|ontology_enrichment_uberon_v019=UBERON:0000160;1.38e-26;17!UBERON:0005409;6.96e-26;22!UBERON:0004921;3.40e-15;33!UBERON:0002108;5.46e-15;4!UBERON:0001155;5.27e-14;9!UBERON:0006947;1.27e-11;3!UBERON:0004054;1.27e-11;3!UBERON:0000059;1.72e-11;11!UBERON:0001301;1.60e-09;1!UBERON:0001000;3.58e-09;1!UBERON:0005352;3.58e-09;1!UBERON:0005904;6.23e-09;4!UBERON:0001242;2.22e-08;4!UBERON:0001262;2.22e-08;4!UBERON:0004786;2.22e-08;4!UBERON:0004808;2.22e-08;4!UBERON:0001277;2.22e-08;4!UBERON:0000058;1.25e-07;10!UBERON:0003135;6.45e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.29e-26,17;UBERON:0005409,8.93e-23,25;UBERON:0002108,5.73e-15,4;UBERON:0001155,5.37e-14,9;UBERON:0006947,1.21e-11,3;UBERON:0004054,1.21e-11,3;UBERON:0000059,1.74e-11,11;UBERON:0001301,1.60e-09,1;UBERON:0001000,3.31e-09,1;UBERON:0005352,3.31e-09,1;UBERON:0005904,5.99e-09,4;UBERON:0004921,1.39e-08,118;UBERON:0001242,2.13e-08,4;UBERON:0001262,2.13e-08,4;UBERON:0004786,2.13e-08,4;UBERON:0004808,2.13e-08,4;UBERON:0001277,2.13e-08,4;UBERON:0005172,4.55e-08,54;UBERON:0005173,4.55e-08,54;UBERON:0001007,9.08e-08,145;UBERON:0001555,9.08e-08,145;UBERON:0007026,9.08e-08,145;UBERON:0002113,2.24e-07,26;UBERON:0003918,2.24e-07,26;UBERON:0011143,2.24e-07,26;UBERON:0005095,2.24e-07,26;UBERON:0007687,2.24e-07,26;UBERON:0002417,3.73e-07,60;UBERON:0000916,3.73e-07,60;UBERON:0003135,6.51e-07,11;UBERON:0004119,8.23e-07,160;UBERON:0000925,8.23e-07,160;UBERON:0006595,8.23e-07,160|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:155455734..155455749,- | |||
|id=chr3:155455734..155455749,- | |||
|ontology_enrichment_celltype=CL:1000497!7.08e-12!18;CL:0002518!7.08e-12!18;CL:1000507!5.84e-11!12;CL:1000494!5.84e-11!12;CL:0000239!2.16e-09!3;CL:1000615!2.16e-09!3;CL:0002306!2.16e-09!3;CL:1000449!5.77e-08!16;CL:0002681!2.06e-07!13;CL:0002584!2.06e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002563;2.22e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.13e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0003104;1.77e-14;31!UBERON:0003918;1.19e-12;10!UBERON:0007687;1.19e-12;10!UBERON:0009497;1.71e-09;13!UBERON:0006242;5.31e-09;1 | |||
|ontology_enrichment_disease=DOID:305!3.42e-08!106;DOID:4468!2.53e-07!2;DOID:7!5.87e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:299;2.08e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.81e-08,106;DOID:299,2.21e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0001008!5.79e-17!45;UBERON:0005172!7.30e-17!55;UBERON:0005173!7.30e-17!55;UBERON:0002113!4.21e-16!27;UBERON:0003918!4.21e-16!27;UBERON:0005095!4.21e-16!27;UBERON:0007687!4.21e-16!27;UBERON:0005177!5.42e-16!107;UBERON:0006554!2.21e-15!44;UBERON:0000489!2.69e-15!32;UBERON:0002417!1.08e-14!61;UBERON:0000916!1.08e-14!61;UBERON:0004921!2.61e-14!129;UBERON:0004185!2.61e-14!129;UBERON:0000160!9.81e-14!27;UBERON:0001007!1.35e-12!155;UBERON:0001555!1.35e-12!155;UBERON:0007026!1.35e-12!155;UBERON:0000466!2.67e-12!126;UBERON:0009569!3.20e-12!113;UBERON:0003064!3.63e-12!37;UBERON:0005409!6.32e-12!35;UBERON:0004119!9.52e-12!169;UBERON:0000925!9.52e-12!169;UBERON:0006595!9.52e-12!169;UBERON:0000080!1.10e-11!18;UBERON:0002120!1.10e-11!18;UBERON:0004875!1.10e-11!18;UBERON:0005721!1.10e-11!18;UBERON:0005754!1.10e-11!18;UBERON:0007297!1.10e-11!18;UBERON:0000058!1.13e-11!26;UBERON:0009773!5.84e-11!12;UBERON:0001231!5.84e-11!12;UBERON:0004810!5.84e-11!12;UBERON:0004876!2.41e-10!20;UBERON:0006947!2.62e-10!3;UBERON:0004054!2.62e-10!3;UBERON:0003104!5.30e-10!238;UBERON:0009142!5.30e-10!238;UBERON:0006555!6.89e-10!17;UBERON:0005103!6.89e-10!17;UBERON:0000083!6.89e-10!17;UBERON:0009201!6.89e-10!17;UBERON:0004819!6.89e-10!17;UBERON:0006553!6.89e-10!17;UBERON:0003074!6.89e-10!17;UBERON:0003060!6.89e-10!17;UBERON:0000059!8.69e-10!11;UBERON:0003887!9.01e-10!21;UBERON:0000077!1.36e-09!130;UBERON:0006853!2.16e-09!3;UBERON:0007685!2.16e-09!3;UBERON:0004134!2.16e-09!3;UBERON:0000464!3.50e-09!104;UBERON:0000481!5.16e-09!347;UBERON:0007023!1.04e-08!115;UBERON:0002100!1.05e-08!216;UBERON:0001155!1.25e-08!9;UBERON:0001046!1.53e-08!19;UBERON:0003886!3.02e-08!63;UBERON:0002553!4.01e-08!70;UBERON:0004175!4.88e-08!25;UBERON:0004211!5.77e-08!16;UBERON:0001285!5.77e-08!16;UBERON:0007684!5.77e-08!16;UBERON:0003220!5.77e-08!16;UBERON:0004208!5.77e-08!16;UBERON:0005904!8.15e-08!4;UBERON:0001225!2.06e-07!13;UBERON:0008987!2.06e-07!13;UBERON:0005911!2.52e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.38e-26;17!UBERON:0005409;6.96e-26;22!UBERON:0004921;3.40e-15;33!UBERON:0002108;5.46e-15;4!UBERON:0001155;5.27e-14;9!UBERON:0006947;1.27e-11;3!UBERON:0004054;1.27e-11;3!UBERON:0000059;1.72e-11;11!UBERON:0001301;1.60e-09;1!UBERON:0001000;3.58e-09;1!UBERON:0005352;3.58e-09;1!UBERON:0005904;6.23e-09;4!UBERON:0001242;2.22e-08;4!UBERON:0001262;2.22e-08;4!UBERON:0004786;2.22e-08;4!UBERON:0004808;2.22e-08;4!UBERON:0001277;2.22e-08;4!UBERON:0000058;1.25e-07;10!UBERON:0003135;6.45e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.29e-26,17;UBERON:0005409,8.93e-23,25;UBERON:0002108,5.73e-15,4;UBERON:0001155,5.37e-14,9;UBERON:0006947,1.21e-11,3;UBERON:0004054,1.21e-11,3;UBERON:0000059,1.74e-11,11;UBERON:0001301,1.60e-09,1;UBERON:0001000,3.31e-09,1;UBERON:0005352,3.31e-09,1;UBERON:0005904,5.99e-09,4;UBERON:0004921,1.39e-08,118;UBERON:0001242,2.13e-08,4;UBERON:0001262,2.13e-08,4;UBERON:0004786,2.13e-08,4;UBERON:0004808,2.13e-08,4;UBERON:0001277,2.13e-08,4;UBERON:0005172,4.55e-08,54;UBERON:0005173,4.55e-08,54;UBERON:0001007,9.08e-08,145;UBERON:0001555,9.08e-08,145;UBERON:0007026,9.08e-08,145;UBERON:0002113,2.24e-07,26;UBERON:0003918,2.24e-07,26;UBERON:0011143,2.24e-07,26;UBERON:0005095,2.24e-07,26;UBERON:0007687,2.24e-07,26;UBERON:0002417,3.73e-07,60;UBERON:0000916,3.73e-07,60;UBERON:0003135,6.51e-07,11;UBERON:0004119,8.23e-07,160;UBERON:0000925,8.23e-07,160;UBERON:0006595,8.23e-07,160 | |||
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|short_description=p@chr3:155455734..155455749,- | |||
}} |
Revision as of 22:18, 12 September 2013
Short description: | p@chr3:155455734..155455749, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:155455734..155455749, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.13e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.29e-26 | 17 |
gastrointestinal system | 8.93e-23 | 25 |
small intestine | 5.73e-15 | 4 |
colon | 5.37e-14 | 9 |
male genital duct | 1.21e-11 | 3 |
internal male genitalia | 1.21e-11 | 3 |
large intestine | 1.74e-11 | 11 |
epididymis | 1.60e-09 | 1 |
vas deferens | 3.31e-09 | 1 |
spermatic cord | 3.31e-09 | 1 |
duct of male reproductive system | 5.99e-09 | 4 |
subdivision of digestive tract | 1.39e-08 | 118 |
intestinal mucosa | 2.13e-08 | 4 |
wall of intestine | 2.13e-08 | 4 |
gastrointestinal system mucosa | 2.13e-08 | 4 |
gastrointestinal system epithelium | 2.13e-08 | 4 |
intestinal epithelium | 2.13e-08 | 4 |
abdomen element | 4.55e-08 | 54 |
abdominal segment element | 4.55e-08 | 54 |
digestive system | 9.08e-08 | 145 |
digestive tract | 9.08e-08 | 145 |
primitive gut | 9.08e-08 | 145 |
kidney | 2.24e-07 | 26 |
kidney mesenchyme | 2.24e-07 | 26 |
upper urinary tract | 2.24e-07 | 26 |
kidney rudiment | 2.24e-07 | 26 |
kidney field | 2.24e-07 | 26 |
abdominal segment of trunk | 3.73e-07 | 60 |
abdomen | 3.73e-07 | 60 |
male reproductive organ | 6.51e-07 | 11 |
endoderm-derived structure | 8.23e-07 | 160 |
endoderm | 8.23e-07 | 160 |
presumptive endoderm | 8.23e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.81e-08 | 106 |
adenocarcinoma | 2.21e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.