FFCP PHASE1:Hg19::chr4:657485..657519,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5158|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8786|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000460119_5end|description=CAGE_peak_2_at_PDE6B_5end|id=chr4:657485..657519,+|ontology_enrichment_celltype=CL:0000542!3.14e-11!53;CL:0000051!3.14e-11!53;CL:0000838!4.84e-11!52;CL:0000988!7.52e-11!182;CL:0000738!1.37e-10!140;CL:0002087!1.31e-09!119;CL:0000791!1.54e-09!18;CL:0000789!1.54e-09!18;CL:0002420!1.54e-09!18;CL:0002419!1.54e-09!18;CL:0000790!1.54e-09!18;CL:0000037!1.80e-09!172;CL:0000566!1.80e-09!172;CL:0002031!2.63e-09!124;CL:0002032!4.95e-08!165;CL:0000837!4.95e-08!165;CL:0000625!1.30e-07!11;CL:0000084!1.53e-07!25;CL:0000827!1.53e-07!25;CL:0000236!6.91e-07!14|ontology_enrichment_celltype_v019=CL:0000791;2.53e-11;18!CL:0000789;2.53e-11;18!CL:0002419;2.53e-11;18!CL:0000084;1.04e-09;25!CL:0000625;1.08e-08;11!CL:0000542;2.58e-08;53!CL:0000236;5.43e-08;13!CL:1000449;1.74e-07;15!CL:1000497;3.14e-07;17!CL:0002518;3.14e-07;17!CL:1000507;3.29e-07;10!CL:1000494;3.29e-07;10|ontology_enrichment_celltype_v019_2=CL:0000542,9.60e-14,53;CL:0000051,9.60e-14,53;CL:0000838,1.61e-13,52;CL:0000988,1.11e-11,177;CL:0000791,2.15e-11,18;CL:0000789,2.15e-11,18;CL:0002420,2.15e-11,18;CL:0002419,2.15e-11,18;CL:0000790,2.15e-11,18;CL:0000738,1.85e-10,136;CL:0000037,3.34e-10,168;CL:0000084,8.89e-10,25;CL:0000827,8.89e-10,25;CL:0002087,2.45e-09,115;CL:0000625,8.21e-09,11;CL:0002031,1.80e-08,120;CL:0002032,1.87e-08,161;CL:0000837,1.87e-08,161;CL:0000236,3.33e-08,14;CL:1000507,2.58e-07,10;CL:1000494,2.58e-07,10;CL:1000449,2.59e-07,15;CL:1000497,4.19e-07,17;CL:0002518,4.19e-07,17|ontology_enrichment_development_v019=CL:0000790;2.53e-11;18!CL:0000051;2.58e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.11e-09!115;UBERON:0002346!1.03e-07!90;UBERON:0003887!1.21e-07!21;UBERON:0000080!4.04e-07!18;UBERON:0002120!4.04e-07!18;UBERON:0004875!4.04e-07!18;UBERON:0005721!4.04e-07!18;UBERON:0005754!4.04e-07!18;UBERON:0007297!4.04e-07!18;UBERON:0006555!6.57e-07!17;UBERON:0005103!6.57e-07!17;UBERON:0000083!6.57e-07!17;UBERON:0009201!6.57e-07!17;UBERON:0004819!6.57e-07!17;UBERON:0006553!6.57e-07!17;UBERON:0003074!6.57e-07!17;UBERON:0003060!6.57e-07!17;UBERON:0003075!7.85e-07!86;UBERON:0007284!7.85e-07!86|ontology_enrichment_uberon_v019=UBERON:0006555;1.74e-07;15!UBERON:0004819;1.74e-07;15!UBERON:0001285;1.74e-07;15!UBERON:0007684;1.74e-07;15!UBERON:0004211;3.29e-07;10!UBERON:0009773;3.29e-07;10!UBERON:0001231;3.29e-07;10!UBERON:0004810;3.29e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0006555,9.29e-08,16;UBERON:0004819,9.29e-08,16;UBERON:0004810,2.58e-07,10;UBERON:0004211,2.59e-07,15;UBERON:0009773,2.59e-07,15;UBERON:0001231,2.59e-07,15;UBERON:0001285,2.59e-07,15;UBERON:0007684,2.59e-07,15;UBERON:0004208,2.59e-07,15|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,5.58240934377942,0.655324116390517,1.31883489114227,0.618831764800233,0,0,0,0,0,2.09305798730539,0.816002764977012,2.19418305034661,4.00730381983479,3.01123735160345,3.26410862946487,0.458480434487708,0.0821005894499457,0.236132343941038,2.36018566109342,2.68680578668049,2.47705797305722,0,0,0,0,2.98555388223585,7.04641054403633,1.10799081706375,1.60435557976113,1.73608696572681,4.92614043327834,6.15397965436061,7.46969146139141,0.290796477559129,0,0.970336244751265,0.929716147622738,0.411167888021826,0,0.575384784644301,0.256160706529101,0.47296445977717,1.03423704220986,0,0,0.564727018627814,0.818718450173537,0.674170453335254,0.918251677112708,0.320929027076094,1.27867425159808,0.329851300186716,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0.75374599577023,0.521482918420201,1.08594422352558,0,0.368277635987565,0,2.95757400836718,2.33864729961548,3.35453832813401,1.90958672949042,2.25265339262259,1.28580469357664,1.71007646244749,1.9891667719909,1.27864907635244,8.79981222306614,4.91524750135918,8.89509253863555,6.40095333849761,8.40831572775626,5.74752439954483,7.93253847341835,8.58648379081828,4.55370375287559,4.11066032559657,3.44045905312706,5.28685314316103,6.1655941927969,9.2184429671277,4.32761494250433,3.93010762749165,4.11202997999018,7.35620579718984,8.47397893247335,6.62826928028627,3.89653456815823,4.12218690475142,5.59751224202191,6.86755073209225,4.06205795647523,5.63601806792971,4.81219585971549,2.79544437826249,3.86890024900188,3.47763702882063,6.07974908964448,8.29376567078111,9.40819714244791,3.96582699441482,6.13152789763074,9.62156847351364,4.55435445635105,8.28270077242652,2.60433381542567,9.50452044448374,4.66782869141096,4.73550461271348,8.74515085866421,5.6826540490564,6.56902397536837,6.45141578319144,3.4767225451856,5.50332734754636,0,1.34140171940727,1.15076305659177,0,0,0.144846518960824,0,0,2.74150969775797,3.76939975686359,2.3715392137144,2.16115474571226,0,0,0.97364218096405,0.348259474598534,0.797747763113191,5.00830311041218,8.00792875092179,5.57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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5158 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8786 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000460119_5end | |||
|description=CAGE_peak_2_at_PDE6B_5end | |||
|id=chr4:657485..657519,+ | |||
|ontology_enrichment_celltype=CL:0000542!3.14e-11!53;CL:0000051!3.14e-11!53;CL:0000838!4.84e-11!52;CL:0000988!7.52e-11!182;CL:0000738!1.37e-10!140;CL:0002087!1.31e-09!119;CL:0000791!1.54e-09!18;CL:0000789!1.54e-09!18;CL:0002420!1.54e-09!18;CL:0002419!1.54e-09!18;CL:0000790!1.54e-09!18;CL:0000037!1.80e-09!172;CL:0000566!1.80e-09!172;CL:0002031!2.63e-09!124;CL:0002032!4.95e-08!165;CL:0000837!4.95e-08!165;CL:0000625!1.30e-07!11;CL:0000084!1.53e-07!25;CL:0000827!1.53e-07!25;CL:0000236!6.91e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.53e-11;18!CL:0000789;2.53e-11;18!CL:0002419;2.53e-11;18!CL:0000084;1.04e-09;25!CL:0000625;1.08e-08;11!CL:0000542;2.58e-08;53!CL:0000236;5.43e-08;13!CL:1000449;1.74e-07;15!CL:1000497;3.14e-07;17!CL:0002518;3.14e-07;17!CL:1000507;3.29e-07;10!CL:1000494;3.29e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.60e-14,53;CL:0000051,9.60e-14,53;CL:0000838,1.61e-13,52;CL:0000988,1.11e-11,177;CL:0000791,2.15e-11,18;CL:0000789,2.15e-11,18;CL:0002420,2.15e-11,18;CL:0002419,2.15e-11,18;CL:0000790,2.15e-11,18;CL:0000738,1.85e-10,136;CL:0000037,3.34e-10,168;CL:0000084,8.89e-10,25;CL:0000827,8.89e-10,25;CL:0002087,2.45e-09,115;CL:0000625,8.21e-09,11;CL:0002031,1.80e-08,120;CL:0002032,1.87e-08,161;CL:0000837,1.87e-08,161;CL:0000236,3.33e-08,14;CL:1000507,2.58e-07,10;CL:1000494,2.58e-07,10;CL:1000449,2.59e-07,15;CL:1000497,4.19e-07,17;CL:0002518,4.19e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000790;2.53e-11;18!CL:0000051;2.58e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.11e-09!115;UBERON:0002346!1.03e-07!90;UBERON:0003887!1.21e-07!21;UBERON:0000080!4.04e-07!18;UBERON:0002120!4.04e-07!18;UBERON:0004875!4.04e-07!18;UBERON:0005721!4.04e-07!18;UBERON:0005754!4.04e-07!18;UBERON:0007297!4.04e-07!18;UBERON:0006555!6.57e-07!17;UBERON:0005103!6.57e-07!17;UBERON:0000083!6.57e-07!17;UBERON:0009201!6.57e-07!17;UBERON:0004819!6.57e-07!17;UBERON:0006553!6.57e-07!17;UBERON:0003074!6.57e-07!17;UBERON:0003060!6.57e-07!17;UBERON:0003075!7.85e-07!86;UBERON:0007284!7.85e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.74e-07;15!UBERON:0004819;1.74e-07;15!UBERON:0001285;1.74e-07;15!UBERON:0007684;1.74e-07;15!UBERON:0004211;3.29e-07;10!UBERON:0009773;3.29e-07;10!UBERON:0001231;3.29e-07;10!UBERON:0004810;3.29e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006555,9.29e-08,16;UBERON:0004819,9.29e-08,16;UBERON:0004810,2.58e-07,10;UBERON:0004211,2.59e-07,15;UBERON:0009773,2.59e-07,15;UBERON:0001231,2.59e-07,15;UBERON:0001285,2.59e-07,15;UBERON:0007684,2.59e-07,15;UBERON:0004208,2.59e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,5.58240934377942,0.655324116390517,1.31883489114227,0.618831764800233,0,0,0,0,0,2.09305798730539,0.816002764977012,2.19418305034661,4.00730381983479,3.01123735160345,3.26410862946487,0.458480434487708,0.0821005894499457,0.236132343941038,2.36018566109342,2.68680578668049,2.47705797305722,0,0,0,0,2.98555388223585,7.04641054403633,1.10799081706375,1.60435557976113,1.73608696572681,4.92614043327834,6.15397965436061,7.46969146139141,0.290796477559129,0,0.970336244751265,0.929716147622738,0.411167888021826,0,0.575384784644301,0.256160706529101,0.47296445977717,1.03423704220986,0,0,0.564727018627814,0.818718450173537,0.674170453335254,0.918251677112708,0.320929027076094,1.27867425159808,0.329851300186716,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0.75374599577023,0.521482918420201,1.08594422352558,0,0.368277635987565,0,2.95757400836718,2.33864729961548,3.35453832813401,1.90958672949042,2.25265339262259,1.28580469357664,1.71007646244749,1.9891667719909,1.27864907635244,8.79981222306614,4.91524750135918,8.89509253863555,6.40095333849761,8.40831572775626,5.74752439954483,7.93253847341835,8.58648379081828,4.55370375287559,4.11066032559657,3.44045905312706,5.28685314316103,6.1655941927969,9.2184429671277,4.32761494250433,3.93010762749165,4.11202997999018,7.35620579718984,8.47397893247335,6.62826928028627,3.89653456815823,4.12218690475142,5.59751224202191,6.86755073209225,4.06205795647523,5.63601806792971,4.81219585971549,2.79544437826249,3.86890024900188,3.47763702882063,6.07974908964448,8.29376567078111,9.40819714244791,3.96582699441482,6.13152789763074,9.62156847351364,4.55435445635105,8.28270077242652,2.60433381542567,9.50452044448374,4.66782869141096,4.73550461271348,8.74515085866421,5.6826540490564,6.56902397536837,6.45141578319144,3.4767225451856,5.50332734754636,0,1.34140171940727,1.15076305659177,0,0,0.144846518960824,0,0,2.74150969775797,3.76939975686359,2.3715392137144,2.16115474571226,0,0,0.97364218096405,0.348259474598534,0.797747763113191,5.00830311041218,8.00792875092179,5.57186251994347,0.198762407366705,0,0,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0.35576626268671,0,0,0.760272105718513,0.488124115096339,0,0.81014194788176,0.892997282840798,1.34717623575702,0.900891843866578,0,0,0.183201743930407,0,0,0,0,0,0,0,0,1.12135520028461,1.06748995729705,0.24666754841716,0.311211035399766,0.538842688278752,0,0.151357427644931,0,1.64025002283658,0,0,0,0.587172493218824,0.323745888736263,0.702254033511242,0.204154171254893,0.122834317311768,0.103325781175765,0,0,0,0,0.673344455816265,0.500474079487857,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0.484938170456436,0,0,0,0,0,0,4.39105342066543,2.91565490307268,3.25343040034651,3.83545903556871,2.01856680700503,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,2.057870056657,4.41026134156626,0,0,0,0,0,1.88724591328378,0,0,0.100528972411631,0.277765335475589,2.28065813717227,0,2.88662684050547,6.95582429850461,0.821860859650752,2.7429625074604,2.31492756288305,3.42457474022277,1.58040879591855,1.71697232418975,4.67812311566055,2.34004265139238,2.97262324577457,0,0.503946384596579,0.567100388969546,0,0,0.383382679165211,0.492663237895943,4.0502279646084,2.48793738648926,3.60299883542404,3.28230326908588,0.317489471460845,0,0,0,0,0,0,0.112131084345361,1.30788020649984,0.22001485746285,0.129271715757778,0,0,0.531876233169741,0,0.771622122786426,0,0.532844358032199,0.857867961948885,1.62786481617433,0.823240336780769,0,1.77695974371273,2.37585561880029,1.80863626235752,2.61460037580088,1.99945982364114,4.86495122564762,4.52031382288914,4.21667878966063,0.479249710983165,1.14861935834114,0,0,0,0,0,3.74358444383662,3.45004119775228,5.00537841491019,1.52456774533478,1.30139853857622,1.54657762555539,2.01019518401218,5.74144876487847,0,0,0.414415513436035,1.47229790062968,2.00068208423871,0.271265023699736,0,0.535286966391485,0.157702415033935,0.468565659970853,0,0,1.03473071292505,0,0,0.173767228936166,1.56640925970192,1.37257369524342,3.3082884179662,3.45142721309787,4.37582986994122,2.12189300012382,0,3.32629322662648,0,0,0,0.128139149255701,0,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0.262248829918848,4.51199612907412,5.93018095703994,7.84349769176855,5.84556898613043,5.48868470242954,1.13733384070897,0.340187410553031,1.0795795805107,4.62681758070868,5.68987518842091,8.52872615553251,2.29388645740534,2.49322802678617,2.68649705666614,1.09629938322967,0.522870902049801,11.5402556302375,6.88830755969382,5.53143270929315,0.618246069886334,0,0,0,0,0,0.290012154876366,0.462145851343933,0.921022048356777,0.275673144969061,0.751941714077915,1.74020032697074,0.596586391912706,0.178064071293475,0.330569830721956,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0.855877976067841,0,0,1.61885211824983,1.37268514868027,0.942499218765491,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,0.578775534266688,0.655894752046633,0,0.30982349809975,0,2.00775893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| |||
|short_description=p2@PDE6B | |||
}} |
Revision as of 11:18, 13 September 2013
Short description: | p2@PDE6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_PDE6B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000460119_5end |
EntrezGene: | PDE6B |
HGNC: | 8786 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.60e-14 | 53 |
common lymphoid progenitor | 9.60e-14 | 53 |
lymphoid lineage restricted progenitor cell | 1.61e-13 | 52 |
hematopoietic cell | 1.11e-11 | 177 |
mature alpha-beta T cell | 2.15e-11 | 18 |
alpha-beta T cell | 2.15e-11 | 18 |
immature T cell | 2.15e-11 | 18 |
mature T cell | 2.15e-11 | 18 |
immature alpha-beta T cell | 2.15e-11 | 18 |
leukocyte | 1.85e-10 | 136 |
hematopoietic stem cell | 3.34e-10 | 168 |
T cell | 8.89e-10 | 25 |
pro-T cell | 8.89e-10 | 25 |
nongranular leukocyte | 2.45e-09 | 115 |
CD8-positive, alpha-beta T cell | 8.21e-09 | 11 |
hematopoietic lineage restricted progenitor cell | 1.80e-08 | 120 |
hematopoietic oligopotent progenitor cell | 1.87e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.87e-08 | 161 |
B cell | 3.33e-08 | 14 |
kidney tubule cell | 2.58e-07 | 10 |
nephron tubule epithelial cell | 2.58e-07 | 10 |
epithelial cell of nephron | 2.59e-07 | 15 |
kidney cell | 4.19e-07 | 17 |
kidney epithelial cell | 4.19e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
excretory tube | 9.29e-08 | 16 |
kidney epithelium | 9.29e-08 | 16 |
nephron tubule epithelium | 2.58e-07 | 10 |
nephron epithelium | 2.59e-07 | 15 |
renal tubule | 2.59e-07 | 15 |
nephron tubule | 2.59e-07 | 15 |
nephron | 2.59e-07 | 15 |
uriniferous tubule | 2.59e-07 | 15 |
nephrogenic mesenchyme | 2.59e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.