FFCP PHASE1:Hg19::chr4:81951957..81951988,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=651|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1070|TSSclassifier=S|UniProt=P12645|association_with_transcript=-130bp_to_ENST00000282701,NM_001201,uc003hmg.3_5end|description=CAGE_peak_2_at_BMP3_5end|id=chr4:81951957..81951988,+|ontology_enrichment_celltype=CL:0000945!2.04e-07!24;CL:0000826!2.04e-07!24|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.31e-31!115;UBERON:0001049!7.30e-13!57;UBERON:0005068!7.30e-13!57;UBERON:0006241!7.30e-13!57;UBERON:0007135!7.30e-13!57;UBERON:0002619!2.40e-11!22;UBERON:0001950!4.27e-11!20;UBERON:0003075!6.84e-11!86;UBERON:0007284!6.84e-11!86;UBERON:0003080!3.59e-10!42;UBERON:0002346!4.93e-10!90;UBERON:0000956!1.32e-09!25;UBERON:0000203!1.32e-09!25;UBERON:0002780!3.30e-09!41;UBERON:0001890!3.30e-09!41;UBERON:0006240!3.30e-09!41;UBERON:0002616!5.35e-09!59;UBERON:0005743!6.28e-09!86;UBERON:0003056!7.39e-09!61;UBERON:0001017!7.73e-09!82;UBERON:0001871!8.73e-09!7;UBERON:0002020!2.91e-08!34;UBERON:0003528!2.91e-08!34;UBERON:0001893!3.36e-08!34;UBERON:0000073!4.93e-08!94;UBERON:0001016!4.93e-08!94;UBERON:0001869!7.06e-08!32;UBERON:0000153!1.56e-07!129;UBERON:0007811!1.56e-07!129;UBERON:0002791!1.82e-07!33|ontology_enrichment_uberon_v019=UBERON:0000160;4.59e-18;17!UBERON:0005409;4.46e-17;22!UBERON:0004921;4.85e-17;33!UBERON:0002108;8.84e-14;4!UBERON:0000922;2.99e-13;49!UBERON:0000059;5.39e-10;11!UBERON:0000341;4.91e-09;2!UBERON:0001555;3.83e-08;54!UBERON:0001155;4.00e-08;9|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.65e-18,17;UBERON:0005409,7.00e-15,25;UBERON:0002108,1.05e-13,4;UBERON:0004921,5.00e-12,118;UBERON:0000059,4.96e-10,11;UBERON:0001007,6.98e-10,145;UBERON:0001555,6.98e-10,145;UBERON:0007026,6.98e-10,145;UBERON:0000341,4.53e-09,2;UBERON:0004119,1.75e-08,160;UBERON:0000925,1.75e-08,160;UBERON:0006595,1.75e-08,160;UBERON:0001155,3.68e-08,9;UBERON:0001046,2.28e-07,19;UBERON:0011216,2.58e-07,223;UBERON:0007023,8.97e-07,114|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.410502947249729,0.550975469195755,0,0,0,0,0,0,4.26069603191659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0.400395987036012,0.574752439954483,0,1.90810750907073,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,1.52631302506568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0.0915694648183434,0.495056999523528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,0.562677665642051,0.111308705022906,0,0,0.597743964753209,1.65770349318689,0,0,0,0,0,0,0,1.38100767891707,0,0,0,0,0,0,0,2.89999830173917,0,2.79679015322043,0,0,0,0.347249989866585,0,0,0,0,0,0.219385397153973,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9431431729421,5.13053874119367,12.8316330436061,0,0,0,0.067401132980677,4.81546588379273,0,2.91927662745066,0,0,0,2.41981432097328,1.53036380815245,0.189559738885464,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,1.84279131327997,0,7.6833451865381,0.137041924646751,0,0.253243183823515,0.391102765469606,0,1.28071796843612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,2.0126081255956,0,1.94081976099493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0.704815022316672,0.640724475406168,2.20086027139532,8.28478110694391,0.496166021811951,0,0,0,1.08803560673895,0,2.14441903734423,6.88532524490589,6.28216385000937,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,1.51243017733031,0.138314504928436,0,0,0,0,0,0,0,0,5.76857044137197,0.902523940191087,0,0.781514011233092,0,0,0,0.202612753855184,0,0,0.126831620387814,2.18789923607288,3.28954660114309,1.48863353516788,0,1.40538670403555,0,0.336283722218824,0,0.227662191351298,0,0.115233987555779,0,0,0.0657727735628491,0,1.22354542081276,1.56986185701028,0,0,4.56579360254748,0,0,1.35805433935647,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0.647428837187895,0.307988420568741,2.3196288626764,0.485710993059139,0,0,0,0.67767649223376,0,0,3.55001127296545,3.0598338470554,0,0.245148321753905,0,0.392616934229891,0.297046400327086,2.113278637917,0,0.0939839179798536,0.0644578879735772,0,1.2498775702396,0,0,3.65168194123259,0.458729283404541,0,0,0.135982980381829,1.74540276136151,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,1.27940389140589,1.90451545170992,0.0645889098360061,0,0,0,0,1.30630048738177,0.342233301085281,0.673520530145875,1.43444410785353,0.99798106963804,0,0,0,0,0,0,0.406896178315738,5.3260541934841,0.603821380773079,0|short_description=p2@BMP3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=651 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1070 | |||
|TSSclassifier=S | |||
|UniProt=P12645 | |||
|association_with_transcript=-130bp_to_ENST00000282701,NM_001201,uc003hmg.3_5end | |||
|description=CAGE_peak_2_at_BMP3_5end | |||
|id=chr4:81951957..81951988,+ | |||
|ontology_enrichment_celltype=CL:0000945!2.04e-07!24;CL:0000826!2.04e-07!24 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.31e-31!115;UBERON:0001049!7.30e-13!57;UBERON:0005068!7.30e-13!57;UBERON:0006241!7.30e-13!57;UBERON:0007135!7.30e-13!57;UBERON:0002619!2.40e-11!22;UBERON:0001950!4.27e-11!20;UBERON:0003075!6.84e-11!86;UBERON:0007284!6.84e-11!86;UBERON:0003080!3.59e-10!42;UBERON:0002346!4.93e-10!90;UBERON:0000956!1.32e-09!25;UBERON:0000203!1.32e-09!25;UBERON:0002780!3.30e-09!41;UBERON:0001890!3.30e-09!41;UBERON:0006240!3.30e-09!41;UBERON:0002616!5.35e-09!59;UBERON:0005743!6.28e-09!86;UBERON:0003056!7.39e-09!61;UBERON:0001017!7.73e-09!82;UBERON:0001871!8.73e-09!7;UBERON:0002020!2.91e-08!34;UBERON:0003528!2.91e-08!34;UBERON:0001893!3.36e-08!34;UBERON:0000073!4.93e-08!94;UBERON:0001016!4.93e-08!94;UBERON:0001869!7.06e-08!32;UBERON:0000153!1.56e-07!129;UBERON:0007811!1.56e-07!129;UBERON:0002791!1.82e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;4.59e-18;17!UBERON:0005409;4.46e-17;22!UBERON:0004921;4.85e-17;33!UBERON:0002108;8.84e-14;4!UBERON:0000922;2.99e-13;49!UBERON:0000059;5.39e-10;11!UBERON:0000341;4.91e-09;2!UBERON:0001555;3.83e-08;54!UBERON:0001155;4.00e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.65e-18,17;UBERON:0005409,7.00e-15,25;UBERON:0002108,1.05e-13,4;UBERON:0004921,5.00e-12,118;UBERON:0000059,4.96e-10,11;UBERON:0001007,6.98e-10,145;UBERON:0001555,6.98e-10,145;UBERON:0007026,6.98e-10,145;UBERON:0000341,4.53e-09,2;UBERON:0004119,1.75e-08,160;UBERON:0000925,1.75e-08,160;UBERON:0006595,1.75e-08,160;UBERON:0001155,3.68e-08,9;UBERON:0001046,2.28e-07,19;UBERON:0011216,2.58e-07,223;UBERON:0007023,8.97e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.410502947249729,0.550975469195755,0,0,0,0,0,0,4.26069603191659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0.400395987036012,0.574752439954483,0,1.90810750907073,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,1.52631302506568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0.0915694648183434,0.495056999523528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,0.562677665642051,0.111308705022906,0,0,0.597743964753209,1.65770349318689,0,0,0,0,0,0,0,1.38100767891707,0,0,0,0,0,0,0,2.89999830173917,0,2.79679015322043,0,0,0,0.347249989866585,0,0,0,0,0,0.219385397153973,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9431431729421,5.13053874119367,12.8316330436061,0,0,0,0.067401132980677,4.81546588379273,0,2.91927662745066,0,0,0,2.41981432097328,1.53036380815245,0.189559738885464,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,1.84279131327997,0,7.6833451865381,0.137041924646751,0,0.253243183823515,0.391102765469606,0,1.28071796843612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,2.0126081255956,0,1.94081976099493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0.704815022316672,0.640724475406168,2.20086027139532,8.28478110694391,0.496166021811951,0,0,0,1.08803560673895,0,2.14441903734423,6.88532524490589,6.28216385000937,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,1.51243017733031,0.138314504928436,0,0,0,0,0,0,0,0,5.76857044137197,0.902523940191087,0,0.781514011233092,0,0,0,0.202612753855184,0,0,0.126831620387814,2.18789923607288,3.28954660114309,1.48863353516788,0,1.40538670403555,0,0.336283722218824,0,0.227662191351298,0,0.115233987555779,0,0,0.0657727735628491,0,1.22354542081276,1.56986185701028,0,0,4.56579360254748,0,0,1.35805433935647,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0.647428837187895,0.307988420568741,2.3196288626764,0.485710993059139,0,0,0,0.67767649223376,0,0,3.55001127296545,3.0598338470554,0,0.245148321753905,0,0.392616934229891,0.297046400327086,2.113278637917,0,0.0939839179798536,0.0644578879735772,0,1.2498775702396,0,0,3.65168194123259,0.458729283404541,0,0,0.135982980381829,1.74540276136151,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,1.27940389140589,1.90451545170992,0.0645889098360061,0,0,0,0,1.30630048738177,0.342233301085281,0.673520530145875,1.43444410785353,0.99798106963804,0,0,0,0,0,0,0.406896178315738,5.3260541934841,0.603821380773079,0 | |||
|short_description=p2@BMP3 | |||
}} |
Revision as of 11:58, 13 September 2013
Short description: | p2@BMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_BMP3_5end |
Coexpression cluster: | NA |
Association with transcript: | -130bp_to_ENST00000282701, NM_001201, uc003hmg.3_5end |
EntrezGene: | BMP3 |
HGNC: | 1070 |
UniProt: | P12645 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 4.65e-18 | 17 |
gastrointestinal system | 7.00e-15 | 25 |
small intestine | 1.05e-13 | 4 |
subdivision of digestive tract | 5.00e-12 | 118 |
large intestine | 4.96e-10 | 11 |
digestive system | 6.98e-10 | 145 |
digestive tract | 6.98e-10 | 145 |
primitive gut | 6.98e-10 | 145 |
throat | 4.53e-09 | 2 |
endoderm-derived structure | 1.75e-08 | 160 |
endoderm | 1.75e-08 | 160 |
presumptive endoderm | 1.75e-08 | 160 |
colon | 3.68e-08 | 9 |
hindgut | 2.28e-07 | 19 |
organ system subdivision | 2.58e-07 | 223 |
adult organism | 8.97e-07 | 114 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.