FFCP PHASE1:Hg19::chr6:20534750..20534765,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54901|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21050|TSSclassifier=S|UniProt=Q5VV42|association_with_transcript=62bp_to_ENST00000274695,ENST00000378624,NM_017774,uc003ndb.1,uc003ndc.1,uc003ndd.1,uc003nde.1,uc010jpo.1_5end|description=CAGE_peak_2_at_CDKAL1_5end|id=chr6:20534750..20534765,+|ontology_enrichment_celltype=CL:0000542!1.55e-18!53;CL:0000051!1.55e-18!53;CL:0000838!5.01e-18!52;CL:0000037!2.82e-15!172;CL:0000566!2.82e-15!172;CL:0000988!5.51e-15!182;CL:0002032!2.42e-13!165;CL:0000837!2.42e-13!165;CL:0000738!5.45e-11!140;CL:0000945!2.76e-09!24;CL:0000826!2.76e-09!24;CL:0002031!3.82e-09!124;CL:0002087!1.17e-08!119;CL:0000084!1.27e-08!25;CL:0000827!1.27e-08!25;CL:0000791!6.17e-07!18;CL:0000789!6.17e-07!18;CL:0002420!6.17e-07!18;CL:0002419!6.17e-07!18;CL:0000790!6.17e-07!18|ontology_enrichment_celltype_v019=CL:0000542;2.96e-13;53!CL:0000945;4.89e-11;24!CL:0000084;1.57e-09;25!CL:0000236;7.19e-09;13!CL:0000791;2.53e-07;18!CL:0000789;2.53e-07;18!CL:0002419;2.53e-07;18|ontology_enrichment_celltype_v019_2=CL:0000542,4.42e-22,53;CL:0000051,4.42e-22,53;CL:0000838,1.85e-21,52;CL:0000988,7.99e-16,177;CL:0000037,1.32e-15,168;CL:0002032,1.18e-13,161;CL:0000837,1.18e-13,161;CL:0000738,8.78e-12,136;CL:0000945,7.45e-11,24;CL:0000826,7.45e-11,24;CL:0000084,4.07e-10,25;CL:0000827,4.07e-10,25;CL:0002031,3.98e-09,120;CL:0002087,5.62e-09,115;CL:0000791,4.64e-08,18;CL:0000789,4.64e-08,18;CL:0002420,4.64e-08,18;CL:0002419,4.64e-08,18;CL:0000790,4.64e-08,18;CL:0000236,8.37e-08,14|ontology_enrichment_development_v019=CL:0000051;2.96e-13;53!CL:0000790;2.53e-07;18|ontology_enrichment_disease=DOID:2531!1.74e-09!51;DOID:0060083!1.74e-09!51|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:2531,6.78e-10,51;DOID:0060083,6.78e-10,51|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0.363356758541113,0,0.281908808191942,0,0.446961094427288,0,0,0.631719873426831,0,0.982935746006035,0,1.09220686065086,1.58260186937072,0.37129905888014,0.331397375727916,1.34465029290355,0,1.46062018077475,0.975865597581014,0.492484232307152,0.204000691244253,0.313454721478088,0.85870796139317,1.64249310087461,1.12988375635323,2.36881557818649,3.03772180964799,3.14843125254717,0.393364276848904,1.15148819429164,2.01260960310899,0.919421224478927,0.30120591877825,0,7.12698245338775,4.40724620711007,0.880801318004542,0.553995408531877,0.802177789880567,1.51907609501096,0.895661896959697,1.29557466407592,2.31818010870768,1.16318591023652,0.377875943688809,0.727752183563449,0,0.411167888021826,0.309706370895104,0.575384784644301,1.0246428261164,0.236482229888585,0.344745680736619,0,0,0.188242339542605,0.545812300115692,0.898893937780338,1.22433556948361,0.641858054152187,0.639337125799041,0.659702600373432,0.398927315243264,0,0.870627715885752,0.56738522469114,0,0.251248665256743,1.0429658368404,0.65156653411535,0.605399502633369,2.20966581592539,0.316462387440884,0.845021145247767,0.850417199860174,0.838634582033504,0.673971786878971,1.20141514273205,1.28580469357664,1.14005097496499,1.19350006319454,0.547992461293902,3.51992488922645,6.00752472388345,4.44754626931777,3.41384178053206,3.2031678962881,1.14950487990897,3.30522436392431,4.77026877267682,2.27685187643779,3.52342313622563,1.91136614062614,3.96513985737078,4.48406850385229,3.16060901730092,3.34406609193516,2.75107533924415,2.2616164889946,4.01247588937627,3.58514493296949,1.4203434172042,5.84480185223734,2.89667187901451,3.53527088969805,2.87994062958707,1.89562704635511,2.17755243533648,3.25148368899696,2.46656856905514,1.65810010671509,2.89803085735052,2.96573126324121,4.81573490561484,0,2.71942422474159,3.44898444241729,2.74901956386104,3.03623630423403,1.59282707162048,1.95325036156926,2.85135613334512,4.21610333417764,2.94369205655162,2.49861453104692,2.8413270245282,0,3.22570789159572,1.60464117470104,2.60683926989038,2.43806866313962,1.34140171940727,0.767175371061182,1.0843174571537,0,0.579386075843295,0.795285947051099,0,1.51255707462509,1.33037638477538,0.614843499851882,1.0478326039817,0,0.370784442784429,1.29818957461873,2.26368658489047,0.797747763113191,2.14641561874808,2.85997455390064,3.34311751196608,1.78886166630035,0,0.694281003215189,1.13061588384802,0.419499436209906,0,0.626984899610432,1.55050055501597,1.42306505074684,2.67776490211736,0.402829317109147,0,0.488124115096339,2.94130464276695,0,2.58969212023831,1.12264686313085,0.337834441449967,0,0.949265659568129,1.28241220751285,2.63560834872127,0,0.436094052142534,0,0.506522046658319,1.32409180813219,1.72101972449288,0,0.560677600142307,0,0.49333509683432,0,0.67355336034844,0.980771418680752,0.454072282934794,0,0,0.312160076830321,0,0.149448680551801,1.17434498643765,1.29498355494505,0.702254033511242,0.408308342509787,0.859840221182376,0.103325781175765,2.37600571456411,0.247266929278557,0,0,1.85169725349473,0.875829639103749,0.831192346452549,0.438977620880838,0.30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3887891756,1.44806194206653,0.852935927603924,2.14257988317366,7.55690245081271,6.95236800113608,1.12131862580613,1.71847327351045,0.808468755832877,1.95945073107265,0.342233301085281,2.76143417359809,1.07583308089015,0.99798106963804,19.3739779294119,3.30854772220918,0,0.0898252021065869,0,2.5670703278402,0.813792356631477,1.33151354837103,1.00636896795513,0.641136984606466|short_description=p2@CDKAL1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=54901 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21050 | |||
|TSSclassifier=S | |||
|UniProt=Q5VV42 | |||
|association_with_transcript=62bp_to_ENST00000274695,ENST00000378624,NM_017774,uc003ndb.1,uc003ndc.1,uc003ndd.1,uc003nde.1,uc010jpo.1_5end | |||
|description=CAGE_peak_2_at_CDKAL1_5end | |||
|id=chr6:20534750..20534765,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.55e-18!53;CL:0000051!1.55e-18!53;CL:0000838!5.01e-18!52;CL:0000037!2.82e-15!172;CL:0000566!2.82e-15!172;CL:0000988!5.51e-15!182;CL:0002032!2.42e-13!165;CL:0000837!2.42e-13!165;CL:0000738!5.45e-11!140;CL:0000945!2.76e-09!24;CL:0000826!2.76e-09!24;CL:0002031!3.82e-09!124;CL:0002087!1.17e-08!119;CL:0000084!1.27e-08!25;CL:0000827!1.27e-08!25;CL:0000791!6.17e-07!18;CL:0000789!6.17e-07!18;CL:0002420!6.17e-07!18;CL:0002419!6.17e-07!18;CL:0000790!6.17e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.96e-13;53!CL:0000945;4.89e-11;24!CL:0000084;1.57e-09;25!CL:0000236;7.19e-09;13!CL:0000791;2.53e-07;18!CL:0000789;2.53e-07;18!CL:0002419;2.53e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.42e-22,53;CL:0000051,4.42e-22,53;CL:0000838,1.85e-21,52;CL:0000988,7.99e-16,177;CL:0000037,1.32e-15,168;CL:0002032,1.18e-13,161;CL:0000837,1.18e-13,161;CL:0000738,8.78e-12,136;CL:0000945,7.45e-11,24;CL:0000826,7.45e-11,24;CL:0000084,4.07e-10,25;CL:0000827,4.07e-10,25;CL:0002031,3.98e-09,120;CL:0002087,5.62e-09,115;CL:0000791,4.64e-08,18;CL:0000789,4.64e-08,18;CL:0002420,4.64e-08,18;CL:0002419,4.64e-08,18;CL:0000790,4.64e-08,18;CL:0000236,8.37e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000051;2.96e-13;53!CL:0000790;2.53e-07;18 | |||
|ontology_enrichment_disease=DOID:2531!1.74e-09!51;DOID:0060083!1.74e-09!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,6.78e-10,51;DOID:0060083,6.78e-10,51 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p2@CDKAL1 | |||
}} |
Revision as of 19:35, 13 September 2013
Short description: | p2@CDKAL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CDKAL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 62bp_to_ENST00000274695, ENST00000378624, NM_017774, uc003ndb.1, uc003ndc.1, uc003ndd.1, uc003nde.1, uc010jpo.1_5end |
EntrezGene: | CDKAL1 |
HGNC: | 21050 |
UniProt: | Q5VV42 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.42e-22 | 53 |
common lymphoid progenitor | 4.42e-22 | 53 |
lymphoid lineage restricted progenitor cell | 1.85e-21 | 52 |
hematopoietic cell | 7.99e-16 | 177 |
hematopoietic stem cell | 1.32e-15 | 168 |
hematopoietic oligopotent progenitor cell | 1.18e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.18e-13 | 161 |
leukocyte | 8.78e-12 | 136 |
lymphocyte of B lineage | 7.45e-11 | 24 |
pro-B cell | 7.45e-11 | 24 |
T cell | 4.07e-10 | 25 |
pro-T cell | 4.07e-10 | 25 |
hematopoietic lineage restricted progenitor cell | 3.98e-09 | 120 |
nongranular leukocyte | 5.62e-09 | 115 |
mature alpha-beta T cell | 4.64e-08 | 18 |
alpha-beta T cell | 4.64e-08 | 18 |
immature T cell | 4.64e-08 | 18 |
mature T cell | 4.64e-08 | 18 |
immature alpha-beta T cell | 4.64e-08 | 18 |
B cell | 8.37e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 6.78e-10 | 51 |
immune system cancer | 6.78e-10 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.