FFCP PHASE1:Hg19::chr6:116382022..116382062,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2444|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3955|TSSclassifier=S|UniProt=P42685|association_with_transcript=-101bp_to_ENST00000368626,NM_002031,uc003pwi.1_5end|description=CAGE_peak_2_at_FRK_5end|id=chr6:116382022..116382062,-|ontology_enrichment_celltype=CL:0000066!3.22e-14!254;CL:0000223!6.80e-14!59;CL:0002076!8.28e-13!43;CL:0002251!5.06e-09!21|ontology_enrichment_celltype_v019=CL:0002076;7.84e-10;42!CL:0002251;6.72e-09;20|ontology_enrichment_celltype_v019_2=CL:0000066,2.87e-17,253;CL:0000223,1.15e-14,58;CL:0002076,1.28e-12,42;CL:0002251,4.77e-09,20|ontology_enrichment_development_v019=UBERON:0006595;1.11e-09;86!UBERON:0008947;4.62e-08;29!CL:0000223;6.93e-08;58!UBERON:0001041;4.24e-07;30!UBERON:0006603;5.74e-07;65|ontology_enrichment_disease=DOID:305!5.18e-18!106;DOID:0050687!9.68e-14!143;DOID:299!1.19e-09!25;DOID:14566!4.18e-09!239;DOID:162!2.92e-08!235;DOID:1749!1.01e-07!14|ontology_enrichment_disease_v019=DOID:1749;2.28e-11;14!DOID:299;5.07e-11;25|ontology_enrichment_disease_v019_2=DOID:305,2.32e-24,106;DOID:0050687,2.11e-16,143;DOID:1749,1.39e-11,14;DOID:14566,3.31e-11,239;DOID:299,3.49e-11,25;DOID:162,1.29e-10,235|ontology_enrichment_uberon=UBERON:0004119!1.76e-23!169;UBERON:0000925!1.76e-23!169;UBERON:0006595!1.76e-23!169;UBERON:0001007!1.17e-20!155;UBERON:0001555!1.17e-20!155;UBERON:0007026!1.17e-20!155;UBERON:0004921!2.54e-20!129;UBERON:0004185!2.54e-20!129;UBERON:0000077!1.52e-19!130;UBERON:0001041!1.45e-13!98;UBERON:0001004!5.64e-12!72;UBERON:0005911!4.85e-11!82;UBERON:0003104!1.30e-10!238;UBERON:0009142!1.30e-10!238;UBERON:0000161!1.33e-09!35;UBERON:0000466!2.56e-09!126;UBERON:0000065!5.24e-09!53;UBERON:0005156!1.86e-08!59;UBERON:0000990!1.86e-08!59;UBERON:0009569!1.09e-07!113;UBERON:0003929!1.90e-07!54;UBERON:0000464!2.52e-07!104;UBERON:0000481!4.97e-07!347;UBERON:0008947!5.84e-07!38;UBERON:0003258!5.84e-07!38;UBERON:0004175!6.95e-07!25;UBERON:0005157!7.96e-07!51;UBERON:0005177!9.58e-07!107|ontology_enrichment_uberon_v019=UBERON:0004175;2.35e-07;21!UBERON:0004921;4.06e-07;33!UBERON:0000344;5.86e-07;20!UBERON:0000974;8.06e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.61e-22,160;UBERON:0000925,1.61e-22,160;UBERON:0006595,1.61e-22,160;UBERON:0001007,1.22e-20,145;UBERON:0001555,1.22e-20,145;UBERON:0007026,1.22e-20,145;UBERON:0004921,1.46e-20,118;UBERON:0001041,1.06e-14,87;UBERON:0001004,1.03e-11,74;UBERON:0005911,5.01e-11,82;UBERON:0000161,2.25e-10,36;UBERON:0004175,3.39e-08,25;UBERON:0000065,4.08e-08,54;UBERON:0003929,9.45e-08,54;UBERON:0005177,9.78e-08,101;UBERON:0000166,2.70e-07,22;UBERON:0005795,3.25e-07,22;UBERON:0008947,3.77e-07,38;UBERON:0003258,3.77e-07,38;UBERON:0000344,6.34e-07,20|phase1_expression=0.363356758541113,0.642301571672949,0.986680828671798,0,0.893922188854576,0,2.53299878168311,0.631719873426831,0.261185628199839,1.47440361900905,0.697801167972428,1.09220686065086,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.534893840235659,0.246301768349837,0.393553906568396,0,0,0,0.919421224478927,0.6024118375565,0.739508020333575,0.309868802321207,0.284338464974843,0,0,0,0,0.447830948479849,1.94336199611388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0.12786256184353,0,0,0,2.3858578411533,0,0,0,0,1.44076983047484,0.364295288292542,0.741568885568859,0,0.174129737299267,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.993943903390637,0.379891534993739,2.25095607382472,0.860509862246441,0.709336764396714,0,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0.206651562351531,0,0,0,0,0,0,0.277064115484183,0,0,0.150238058906597,0.226864366320042,0,0,0.635795703478686,0.300091096084402,0.412210116953756,0,0.18611685633159,0,0.0974370051611986,0,0.552299391853796,0,0,0,0,2.89891279744945,3.54569956768085,2.29443676311203,0,0,0,0.310983165046111,0,0,0,0,0,0.464367928031979,2.16563844500876,1.65629520055781,1.18009283054671,0.964044119533928,1.54411561825352,1.30727666455444,1.89816495288877,1.48314438976181,0.588664395376038,1.92373578473195,0,0,0.4115740113314,0,2.53510069643662,3.9313088667105,1.77236972004421,0,3.93563003337963,0,2.52425656439839,0,1.00528972411631,0.925884451585296,0,0,0,0,0.234817388471643,0,0,0.570762456703795,3.1608175918371,1.71697232418975,0.492434012174795,0.468008530278475,0.148631162288728,0,5.54341023056236,3.40260233381728,0.626909658919938,0,0.383382679165211,0,0,0,0,0,0.317489471460845,0.381988425558278,0,0,0.411309970813294,0.901029173531752,0.857479297891735,0,0,0,0.646358578788889,0,0.845302752556,0,0,0,0,0,0.428933980974443,0,0,0,0,0,7.23454504943007,3.48613383440118,3.59902768255405,0,0,0,0,0,0,0.723906533337896,0.205476322550383,0.895304816199478,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2444 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3955 | |||
|TSSclassifier=S | |||
|UniProt=P42685 | |||
|association_with_transcript=-101bp_to_ENST00000368626,NM_002031,uc003pwi.1_5end | |||
|description=CAGE_peak_2_at_FRK_5end | |||
|id=chr6:116382022..116382062,- | |||
|ontology_enrichment_celltype=CL:0000066!3.22e-14!254;CL:0000223!6.80e-14!59;CL:0002076!8.28e-13!43;CL:0002251!5.06e-09!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.84e-10;42!CL:0002251;6.72e-09;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.87e-17,253;CL:0000223,1.15e-14,58;CL:0002076,1.28e-12,42;CL:0002251,4.77e-09,20 | |||
|ontology_enrichment_development_v019=UBERON:0006595;1.11e-09;86!UBERON:0008947;4.62e-08;29!CL:0000223;6.93e-08;58!UBERON:0001041;4.24e-07;30!UBERON:0006603;5.74e-07;65 | |||
|ontology_enrichment_disease=DOID:305!5.18e-18!106;DOID:0050687!9.68e-14!143;DOID:299!1.19e-09!25;DOID:14566!4.18e-09!239;DOID:162!2.92e-08!235;DOID:1749!1.01e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.28e-11;14!DOID:299;5.07e-11;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.32e-24,106;DOID:0050687,2.11e-16,143;DOID:1749,1.39e-11,14;DOID:14566,3.31e-11,239;DOID:299,3.49e-11,25;DOID:162,1.29e-10,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.76e-23!169;UBERON:0000925!1.76e-23!169;UBERON:0006595!1.76e-23!169;UBERON:0001007!1.17e-20!155;UBERON:0001555!1.17e-20!155;UBERON:0007026!1.17e-20!155;UBERON:0004921!2.54e-20!129;UBERON:0004185!2.54e-20!129;UBERON:0000077!1.52e-19!130;UBERON:0001041!1.45e-13!98;UBERON:0001004!5.64e-12!72;UBERON:0005911!4.85e-11!82;UBERON:0003104!1.30e-10!238;UBERON:0009142!1.30e-10!238;UBERON:0000161!1.33e-09!35;UBERON:0000466!2.56e-09!126;UBERON:0000065!5.24e-09!53;UBERON:0005156!1.86e-08!59;UBERON:0000990!1.86e-08!59;UBERON:0009569!1.09e-07!113;UBERON:0003929!1.90e-07!54;UBERON:0000464!2.52e-07!104;UBERON:0000481!4.97e-07!347;UBERON:0008947!5.84e-07!38;UBERON:0003258!5.84e-07!38;UBERON:0004175!6.95e-07!25;UBERON:0005157!7.96e-07!51;UBERON:0005177!9.58e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0004175;2.35e-07;21!UBERON:0004921;4.06e-07;33!UBERON:0000344;5.86e-07;20!UBERON:0000974;8.06e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.61e-22,160;UBERON:0000925,1.61e-22,160;UBERON:0006595,1.61e-22,160;UBERON:0001007,1.22e-20,145;UBERON:0001555,1.22e-20,145;UBERON:0007026,1.22e-20,145;UBERON:0004921,1.46e-20,118;UBERON:0001041,1.06e-14,87;UBERON:0001004,1.03e-11,74;UBERON:0005911,5.01e-11,82;UBERON:0000161,2.25e-10,36;UBERON:0004175,3.39e-08,25;UBERON:0000065,4.08e-08,54;UBERON:0003929,9.45e-08,54;UBERON:0005177,9.78e-08,101;UBERON:0000166,2.70e-07,22;UBERON:0005795,3.25e-07,22;UBERON:0008947,3.77e-07,38;UBERON:0003258,3.77e-07,38;UBERON:0000344,6.34e-07,20 | |||
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| |||
|short_description=p2@FRK | |||
}} |
Revision as of 17:32, 13 September 2013
Short description: | p2@FRK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_FRK_5end |
Coexpression cluster: | NA |
Association with transcript: | -101bp_to_ENST00000368626, NM_002031, uc003pwi.1_5end |
EntrezGene: | FRK |
HGNC: | 3955 |
UniProt: | P42685 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.87e-17 | 253 |
endodermal cell | 1.15e-14 | 58 |
endo-epithelial cell | 1.28e-12 | 42 |
epithelial cell of alimentary canal | 4.77e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.61e-22 | 160 |
endoderm | 1.61e-22 | 160 |
presumptive endoderm | 1.61e-22 | 160 |
digestive system | 1.22e-20 | 145 |
digestive tract | 1.22e-20 | 145 |
primitive gut | 1.22e-20 | 145 |
subdivision of digestive tract | 1.46e-20 | 118 |
foregut | 1.06e-14 | 87 |
respiratory system | 1.03e-11 | 74 |
endo-epithelium | 5.01e-11 | 82 |
orifice | 2.25e-10 | 36 |
internal genitalia | 3.39e-08 | 25 |
respiratory tract | 4.08e-08 | 54 |
gut epithelium | 9.45e-08 | 54 |
trunk region element | 9.78e-08 | 101 |
oral opening | 2.70e-07 | 22 |
embryonic uterus | 3.25e-07 | 22 |
respiratory primordium | 3.77e-07 | 38 |
endoderm of foregut | 3.77e-07 | 38 |
mucosa | 6.34e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.32e-24 | 106 |
cell type cancer | 2.11e-16 | 143 |
squamous cell carcinoma | 1.39e-11 | 14 |
disease of cellular proliferation | 3.31e-11 | 239 |
adenocarcinoma | 3.49e-11 | 25 |
cancer | 1.29e-10 | 235 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.