FFCP PHASE1:Hg19::chr9:140500175..140500192,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=92714|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28633|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000466367,ENST00000471125,ENST00000495220_5end|description=CAGE_peak_4_at_ARRDC1_5end|id=chr9:140500175..140500192,+|ontology_enrichment_celltype=CL:0000066!5.72e-18!254;CL:0002076!1.93e-14!43;CL:0000223!2.62e-11!59;CL:0000860!2.17e-10!45;CL:0002057!4.17e-09!42;CL:0002009!1.12e-08!65;CL:0002194!1.15e-08!63;CL:0000576!1.15e-08!63;CL:0000040!1.15e-08!63;CL:0000559!1.15e-08!63;CL:0000763!1.26e-08!112;CL:0000049!1.26e-08!112;CL:0000557!1.55e-08!71;CL:0000766!4.46e-08!76;CL:0000839!1.05e-07!70;CL:0002251!1.08e-07!21;CL:0000063!2.62e-07!578|ontology_enrichment_celltype_v019=CL:0002076;9.56e-14;42!CL:0002368;4.24e-09;13!CL:0002251;5.75e-08;20!CL:0002327;7.82e-07;4|ontology_enrichment_celltype_v019_2=CL:0000066,2.95e-22,253;CL:0002076,6.19e-18,42;CL:0000223,2.02e-14,58;CL:0002368,5.03e-09,13;CL:0002393,1.46e-08,9;CL:0002397,1.46e-08,9;CL:0002251,9.48e-08,20;CL:0002327,8.09e-07,4;CL:1000507,8.61e-07,10;CL:1000494,8.61e-07,10|ontology_enrichment_development_v019=CL:0000223;8.82e-09;58|ontology_enrichment_disease=DOID:305!3.27e-11!106;DOID:299!6.89e-07!25|ontology_enrichment_disease_v019=DOID:299;4.29e-09;25!DOID:5093;6.77e-07;4!DOID:1612;6.77e-07;4|ontology_enrichment_disease_v019_2=DOID:305,1.61e-10,106;DOID:299,1.98e-09,25;DOID:5093,6.87e-07,4;DOID:1612,6.87e-07,4|ontology_enrichment_uberon=UBERON:0001004!5.23e-09!72;UBERON:0000065!3.57e-07!53;UBERON:0002371!4.59e-07!80;UBERON:0004119!5.01e-07!169;UBERON:0000925!5.01e-07!169;UBERON:0006595!5.01e-07!169;UBERON:0002390!5.10e-07!102;UBERON:0003061!5.10e-07!102;UBERON:0001474!7.55e-07!86|ontology_enrichment_uberon_v019=UBERON:0001911;7.82e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.47e-08,160;UBERON:0000925,3.47e-08,160;UBERON:0006595,3.47e-08,160;UBERON:0001004,3.79e-08,74;UBERON:0000065,7.82e-07,54;UBERON:0001911,8.09e-07,4;UBERON:0005333,8.09e-07,4;UBERON:0008425,8.09e-07,4;UBERON:0005311,8.09e-07,4;UBERON:0004810,8.61e-07,10|phase1_expression=0.363356758541113,0,0.281908808191942,0,0.446961094427288,0.872338524100369,0,0.631719873426831,0,0.737201809504527,5.58240934377942,3.49506195408276,4.48403862988371,0.123766352960047,0.662794751455832,0.672325146451775,0,0,0.975865597581014,0.123121058076788,0.204000691244253,0,0.286235987131057,0,0.251085279189606,0.0764134057479513,0,0.236132343941038,1.57345710739562,0.383829398097213,0.928896739896456,3.67768489791571,5.12050061923025,13.3111443660044,0,0.284338464974843,0.880801318004542,5.53995408531877,2.4065333696417,1.95309783644267,0,0.647787332037959,0.515151135268373,2.03557534291391,0.377875943688809,1.4555043671269,1.16214518452842,0.822335776043652,0.309706370895104,0.28769239232215,0.768482119587302,0.47296445977717,1.37898272294647,0.645484683583826,1.35426486594342,1.12945403725563,0.818718450173537,0,0.918251677112708,0.641858054152187,0.639337125799041,1.9791078011203,0.598390972864896,1.27867425159808,0.580418477257168,1.13477044938228,0.622822248995575,0.75374599577023,0.521482918420201,0.434377689410233,0,1.84138817993782,0.632924774881769,4.22510572623884,3.61427309940574,0.838634582033504,1.34794357375794,1.65194582125657,0.64290234678832,3.99017841237748,3.77941686678271,4.01861138282195,0,0,0,0,0,0,0.661044872784862,0,0,0.587237189370939,1.14681968437569,1.32171328579026,0.560508562981536,2.37045676297569,0,0.786021525498329,0.205601498999509,0.668745981562712,0.32592226663359,0,0,0.334231370655521,0.294605907474837,0.221533894583621,0,0.384273959177026,0.520237390239513,0.493313713811028,0.552700035571697,0,0.14828656316206,0,0,0,0.383220493601921,0,0.506039384039006,0,0,0,0.602300476311091,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0.221729397462564,0.614843499851882,0.392937226493138,5.10013403609559,4.82019775619758,0.324547393654683,0.522389211897802,0.664789802594326,0.953962497221368,0.571994910780128,0.371457501329565,0,0.860234595106124,0,0,1.25849830862972,0.275118041940067,0.417989933073621,0.258416759169329,0,0,0.402829317109147,0,0.732186172644509,0.367663080345869,0,0,0,0,0,0.949265659568129,0,1.31780417436063,0,5.66922267785295,0,0.12663051166458,0.397227542439656,0.573673241497627,0.354668382198357,0.560677600142307,1.06748995729705,0.98667019366864,0,0,0,0.151357427644931,0.576175924479999,0.234321431833797,0.312160076830321,0.570471821544449,0.149448680551801,0,0,0,0.204154171254893,0.122834317311768,0.413303124703062,0,0,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0.438977620880838,0.30648779579902,0,0.453728732640084,0.358779271377724,0,0.635795703478686,0,0.309157587715317,0,0.18611685633159,1.35021065793013,0.194874010322397,0.252433774244115,0.0920498986422993,0.161646056818812,0.355009592516614,0.201504196455281,0.169560592310488,2.12586938479627,0.545492241181669,2.00763216772303,0.487894824518382,0.132529768321485,0.69716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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=92714 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28633 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000466367,ENST00000471125,ENST00000495220_5end | |||
|description=CAGE_peak_4_at_ARRDC1_5end | |||
|id=chr9:140500175..140500192,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.72e-18!254;CL:0002076!1.93e-14!43;CL:0000223!2.62e-11!59;CL:0000860!2.17e-10!45;CL:0002057!4.17e-09!42;CL:0002009!1.12e-08!65;CL:0002194!1.15e-08!63;CL:0000576!1.15e-08!63;CL:0000040!1.15e-08!63;CL:0000559!1.15e-08!63;CL:0000763!1.26e-08!112;CL:0000049!1.26e-08!112;CL:0000557!1.55e-08!71;CL:0000766!4.46e-08!76;CL:0000839!1.05e-07!70;CL:0002251!1.08e-07!21;CL:0000063!2.62e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002076;9.56e-14;42!CL:0002368;4.24e-09;13!CL:0002251;5.75e-08;20!CL:0002327;7.82e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.95e-22,253;CL:0002076,6.19e-18,42;CL:0000223,2.02e-14,58;CL:0002368,5.03e-09,13;CL:0002393,1.46e-08,9;CL:0002397,1.46e-08,9;CL:0002251,9.48e-08,20;CL:0002327,8.09e-07,4;CL:1000507,8.61e-07,10;CL:1000494,8.61e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000223;8.82e-09;58 | |||
|ontology_enrichment_disease=DOID:305!3.27e-11!106;DOID:299!6.89e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;4.29e-09;25!DOID:5093;6.77e-07;4!DOID:1612;6.77e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.61e-10,106;DOID:299,1.98e-09,25;DOID:5093,6.87e-07,4;DOID:1612,6.87e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001004!5.23e-09!72;UBERON:0000065!3.57e-07!53;UBERON:0002371!4.59e-07!80;UBERON:0004119!5.01e-07!169;UBERON:0000925!5.01e-07!169;UBERON:0006595!5.01e-07!169;UBERON:0002390!5.10e-07!102;UBERON:0003061!5.10e-07!102;UBERON:0001474!7.55e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;7.82e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.47e-08,160;UBERON:0000925,3.47e-08,160;UBERON:0006595,3.47e-08,160;UBERON:0001004,3.79e-08,74;UBERON:0000065,7.82e-07,54;UBERON:0001911,8.09e-07,4;UBERON:0005333,8.09e-07,4;UBERON:0008425,8.09e-07,4;UBERON:0005311,8.09e-07,4;UBERON:0004810,8.61e-07,10 | |||
|phase1_expression=0.363356758541113,0,0.281908808191942,0,0.446961094427288,0.872338524100369,0,0.631719873426831,0,0.737201809504527,5.58240934377942,3.49506195408276,4.48403862988371,0.123766352960047,0.662794751455832,0.672325146451775,0,0,0.975865597581014,0.123121058076788,0.204000691244253,0,0.286235987131057,0,0.251085279189606,0.0764134057479513,0,0.236132343941038,1.57345710739562,0.383829398097213,0.928896739896456,3.67768489791571,5.12050061923025,13.3111443660044,0,0.284338464974843,0.880801318004542,5.53995408531877,2.4065333696417,1.95309783644267,0,0.647787332037959,0.515151135268373,2.03557534291391,0.377875943688809,1.4555043671269,1.16214518452842,0.822335776043652,0.309706370895104,0.28769239232215,0.768482119587302,0.47296445977717,1.37898272294647,0.645484683583826,1.35426486594342,1.12945403725563,0.818718450173537,0,0.918251677112708,0.641858054152187,0.639337125799041,1.9791078011203,0.598390972864896,1.27867425159808,0.580418477257168,1.13477044938228,0.622822248995575,0.75374599577023,0.521482918420201,0.434377689410233,0,1.84138817993782,0.632924774881769,4.22510572623884,3.61427309940574,0.838634582033504,1.34794357375794,1.65194582125657,0.64290234678832,3.99017841237748,3.77941686678271,4.01861138282195,0,0,0,0,0,0,0.661044872784862,0,0,0.587237189370939,1.14681968437569,1.32171328579026,0.560508562981536,2.37045676297569,0,0.786021525498329,0.205601498999509,0.668745981562712,0.32592226663359,0,0,0.334231370655521,0.294605907474837,0.221533894583621,0,0.384273959177026,0.520237390239513,0.493313713811028,0.552700035571697,0,0.14828656316206,0,0,0,0.383220493601921,0,0.506039384039006,0,0,0,0.602300476311091,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0.221729397462564,0.614843499851882,0.392937226493138,5.10013403609559,4.82019775619758,0.324547393654683,0.522389211897802,0.664789802594326,0.953962497221368,0.571994910780128,0.371457501329565,0,0.860234595106124,0,0,1.25849830862972,0.275118041940067,0.417989933073621,0.258416759169329,0,0,0.402829317109147,0,0.732186172644509,0.367663080345869,0,0,0,0,0,0.949265659568129,0,1.31780417436063,0,5.66922267785295,0,0.12663051166458,0.397227542439656,0.573673241497627,0.354668382198357,0.560677600142307,1.06748995729705,0.98667019366864,0,0,0,0.151357427644931,0.576175924479999,0.234321431833797,0.312160076830321,0.570471821544449,0.149448680551801,0,0,0,0.204154171254893,0.122834317311768,0.413303124703062,0,0,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0.438977620880838,0.30648779579902,0,0.453728732640084,0.358779271377724,0,0.635795703478686,0,0.309157587715317,0,0.18611685633159,1.35021065793013,0.194874010322397,0.252433774244115,0.0920498986422993,0.161646056818812,0.355009592516614,0.201504196455281,0.169560592310488,2.12586938479627,0.545492241181669,2.00763216772303,0.487894824518382,0.132529768321485,0.69716365721711,0.829288440122964,0.504641701751257,0.72995471815166,0,0,0,0,0.721879481669586,1.77460200059766,1.34867752062481,1.20505514941741,1.54411561825352,1.74303555273925,0,1.34831308160164,0.784885860501384,1.15424147083917,0,0,0,0,0,1.96565443335525,0,0,2.95172252503473,0,2.74375713521564,11.240175325762,2.51322431029077,2.22212268380471,0,0,0,0.231860809950154,0.234817388471643,0,0,0.190254152234598,26.0767451326561,16.3112370798026,0.492434012174795,0.234004265139238,0.891786973732369,0,1.00789276919316,0.567100388969546,14.4189221551586,7.55648240136301,8.05103626246943,1.97065295158377,0.616339038092582,0.207328115540772,0,0.12624243342638,0.063497894292169,0.381988425558278,0,0,0.411309970813294,0.300343057843917,0,0.336393253036082,0,0.1466765716419,0.258543431515556,0,0,0.531876233169741,0,0,1.41849132023278,0,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0.399891964728228,1.2162378064119,0,0,0,0,0,1.01346914667305,0.410952645100767,0,0.448340575974109,0.197030760201927,0.431255149719035,0.256686072559497,0,0,0,0.167516265334349,0.637938751653163,2.99602809578873,0,0,0,0,0,0,0.713715955188647,0.157702415033935,0.117141414992713,0.902838299183157,4.5481500811197,2.0694614258501,0,0.368738337083406,0,0.587403472388222,0,0.413536052245775,0,0.533637789017222,3.33440328590885,0,1.81434175997808,0.496215615637554,0.153461973288062,0,0.256278298511402,0,0.321707842287215,0,0,0.710246901252508,0.0821271560138091,0,0,1.32945394550784,1.20303882181971,5.98526428083326,0.114814448164607,0.546273504020151,0.262248829918848,3.60959690325929,1.61732207919271,3.13739907670742,1.46139224653261,1.79437769117889,0,0.340187410553031,0,0,0.541892875087706,2.00675909541941,3.82314409567557,7.47968408035852,0.671624264166535,0,0.261435451024901,0.256450125116389,0.656029291399411,0.325378394664303,0.721287081534056,0.27470839445503,0.41254749960294,0.574265537996172,2.60024098414608,0,0.096670718292122,0,0.15350367472613,0,0,0.290033387828457,0.0852266274161009,0,3.8015530533025,3.45942121257191,7.52915003718046,5.0578890427775,0,0.94443704049192,0,0.616067160352178,1.0646120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| |||
|short_description=p4@ARRDC1 | |||
}} |
Revision as of 08:24, 14 September 2013
Short description: | p4@ARRDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_ARRDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000466367, ENST00000471125, ENST00000495220_5end |
EntrezGene: | ARRDC1 |
HGNC: | 28633 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.95e-22 | 253 |
endo-epithelial cell | 6.19e-18 | 42 |
endodermal cell | 2.02e-14 | 58 |
respiratory epithelial cell | 5.03e-09 | 13 |
intermediate monocyte | 1.46e-08 | 9 |
CD14-positive, CD16-positive monocyte | 1.46e-08 | 9 |
epithelial cell of alimentary canal | 9.48e-08 | 20 |
mammary gland epithelial cell | 8.09e-07 | 4 |
kidney tubule cell | 8.61e-07 | 10 |
nephron tubule epithelial cell | 8.61e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.47e-08 | 160 |
endoderm | 3.47e-08 | 160 |
presumptive endoderm | 3.47e-08 | 160 |
respiratory system | 3.79e-08 | 74 |
respiratory tract | 7.82e-07 | 54 |
mammary gland | 8.09e-07 | 4 |
mammary bud | 8.09e-07 | 4 |
mammary ridge | 8.09e-07 | 4 |
mammary placode | 8.09e-07 | 4 |
nephron tubule epithelium | 8.61e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.61e-10 | 106 |
adenocarcinoma | 1.98e-09 | 25 |
thoracic cancer | 6.87e-07 | 4 |
breast cancer | 6.87e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.