FFCP PHASE1:Hg19::chr10:54214960..54214985,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=46bp_to_ENST00000435813,uc001jjs.2_5end | |||
|coexpression_cluster_id=C1315 | |||
|description=CAGE_peak_3_at_ENST00000435813_5end,CAGE_peak_3_at_uc001jjs.2_5end | |||
|id=chr10:54214960..54214985,- | |||
|ontology_enrichment_celltype=CL:0002076!4.45e-18!43;CL:0000223!7.86e-15!59;CL:0000066!1.35e-13!254;CL:0002251!2.68e-10!21;CL:0002620!5.09e-09!23;CL:0000243!5.71e-09!15;CL:0000125!5.71e-09!15;CL:0000030!5.71e-09!15;CL:0000339!5.71e-09!15;CL:0002231!2.53e-08!3;CL:0000095!7.28e-08!17;CL:0000123!7.28e-08!17;CL:0000076!7.68e-08!62;CL:0002328!8.50e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000243;4.16e-11;15!CL:0000125;4.16e-11;15!CL:0000095;7.19e-10;17!CL:0002251;9.43e-09;20!CL:0002573;3.42e-08;2!CL:0002231;1.62e-07;3!CL:0002319;9.44e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,4.13e-11,15;CL:0000125,4.13e-11,15;CL:0000030,4.13e-11,15;CL:0000339,4.13e-11,15;CL:0000095,7.14e-10,17;CL:0000123,7.14e-10,17;CL:0002251,8.72e-09,20;CL:0002573,3.31e-08,2;CL:0002231,1.98e-07,3;CL:0000066,2.76e-07,253;CL:0000223,5.53e-07,58;CL:0002319,9.39e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000339;4.16e-11;15!UBERON:0006238;3.17e-08;10 | |||
|ontology_enrichment_disease=DOID:1749!2.63e-21!14;DOID:305!9.08e-14!106;DOID:7!6.46e-13!39;DOID:14566!2.26e-12!239;DOID:0050687!1.12e-10!143;DOID:162!1.74e-10!235;DOID:299!4.94e-07!25;DOID:5093!9.65e-07!4;DOID:1612!9.65e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.74e-23;14!DOID:5093;3.16e-12;4!DOID:1612;3.16e-12;4!DOID:4074;3.29e-11;2!DOID:4905;3.29e-11;2!DOID:3498;3.29e-11;2!DOID:7;5.49e-10;39!DOID:299;2.79e-09;25!DOID:3093;1.53e-07;11!DOID:3111;7.77e-07;1!DOID:3603;7.77e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.37e-23,14;DOID:14566,1.92e-14,239;DOID:7,8.44e-14,39;DOID:305,2.32e-13,106;DOID:162,1.97e-12,235;DOID:5093,3.62e-12,4;DOID:1612,3.62e-12,4;DOID:4074,3.12e-11,2;DOID:4905,3.12e-11,2;DOID:3498,3.12e-11,2;DOID:0050687,5.81e-10,143;DOID:299,2.56e-09,25;DOID:3093,1.54e-07,11;DOID:3111,7.77e-07,1;DOID:3603,7.77e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000344!2.40e-16!12;UBERON:0003729!2.15e-13!5;UBERON:0003343!1.71e-11!4;UBERON:0004785!1.71e-11!4;UBERON:0003102!5.11e-08!95;UBERON:0004815!8.50e-08!3;UBERON:0002031!8.50e-08!3;UBERON:0000485!8.59e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;3.85e-21;4!UBERON:0004785;3.85e-21;4!UBERON:0000974;3.75e-14;6!UBERON:0000344;7.01e-12;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,3.48e-21,4;UBERON:0004785,3.48e-21,4;UBERON:0000344,6.38e-12,20;UBERON:0000974,1.51e-08,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97328599257748,0,0,0.600182192168805,0.103052529238439,1.54584324027377,0.930584281657949,0.843881661206331,2.04617710838517,0,0,0,0.710019185033229,2.61955455391865,0.847802961552438,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09080345523293,0,0,0,0.201057944823262,0.277765335475589,0,0,0,0.463721619900307,0,0,0,0,3.1608175918371,3.43394464837949,0,0,0,0,0,0.141775097242386,0.626909658919938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,1.40354529212299,0.828728900423067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68426486367398,0,7.28163130497081,0,0,0,0,0,0,0,0,0,0,0,0,0,34.7713520507326,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,1.30213880542617,0,0,3.07242310370849,0,0,0,0,0,0,0,0,0,0,0,0,2.23077990845765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69623685720729,0,0,0,0,0,0,0,0,0,0,0,3.52196314077761,1.45668227720456,0,0,0,0,0,0,0,0,0,0,0,0.970722711091971,0,0.881931576729399,0,0,0,0,0,0,0,0,0,0,0,0,0.391102765469606,0,0,0,0,12.8280987705826,0,0,0,0,16.9880257592018,22.6988176497763,0.101998217636322,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0,0,0,0,0,0,0.326587360109409,2.39460383124975,0,1.02232813071253,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,12.1284838976335,0,0,0,0,0,0,0,0,0,0,0,0,5.24917713440848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62065732026684,0,11.1035081470522,0,0,0.176689145945881,0,0,0,0,0.303859956177382,0,0,0,0,0,0,9.08642130442096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.67404485806974,1.65157612686837,2.20114318226015,5.77628330751691,0,0,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,1.55723962648897,0,0,0.280272163313789,0,1.07963795609311,0,0,0,0,0,0,0,0,0,0,6.74492404164222,6.90228578549177,0,0.9164274741762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,4.2347384605883,2.56772373405338,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@ENST00000435813,p3@uc001jjs.2 | |||
}} |
Revision as of 02:51, 11 January 2014
Short description: | p3@ENST00000435813, p3@uc001jjs.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ENST00000435813_5end, CAGE_peak_3_at_uc001jjs.2_5end |
Coexpression cluster: | C1315_mucinous_astrocytoma_malignant_glioblastoma_oral_gastric_medulloblastoma |
Association with transcript: | 46bp_to_ENST00000435813, uc001jjs.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 4.13e-11 | 15 |
glial cell | 4.13e-11 | 15 |
glioblast | 4.13e-11 | 15 |
glioblast (sensu Vertebrata) | 4.13e-11 | 15 |
neuron associated cell | 7.14e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 7.14e-10 | 17 |
epithelial cell of alimentary canal | 8.72e-09 | 20 |
Schwann cell | 3.31e-08 | 2 |
epithelial cell of prostate | 1.98e-07 | 3 |
epithelial cell | 2.76e-07 | 253 |
endodermal cell | 5.53e-07 | 58 |
neural cell | 9.39e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 3.48e-21 | 4 |
respiratory system mucosa | 3.48e-21 | 4 |
mucosa | 6.38e-12 | 20 |
neck | 1.51e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.37e-23 | 14 |
disease of cellular proliferation | 1.92e-14 | 239 |
disease of anatomical entity | 8.44e-14 | 39 |
carcinoma | 2.32e-13 | 106 |
cancer | 1.97e-12 | 235 |
thoracic cancer | 3.62e-12 | 4 |
breast cancer | 3.62e-12 | 4 |
pancreas adenocarcinoma | 3.12e-11 | 2 |
pancreatic carcinoma | 3.12e-11 | 2 |
pancreatic ductal adenocarcinoma | 3.12e-11 | 2 |
cell type cancer | 5.81e-10 | 143 |
adenocarcinoma | 2.56e-09 | 25 |
nervous system cancer | 1.54e-07 | 11 |
cystadenocarcinoma | 7.77e-07 | 1 |
mucinous cystadenocarcinoma | 7.77e-07 | 1 |