FFCP PHASE1:Hg19::chr14:51261476..51261480,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=51199 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14906 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-240bp_to_ENST00000486200_5end | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_3_at_NIN_5end | |||
|id=chr14:51261476..51261480,- | |||
|ontology_enrichment_celltype=CL:0000738!2.22e-14!140;CL:0000037!6.54e-14!172;CL:0000566!6.54e-14!172;CL:0002087!9.73e-13!119;CL:0000988!1.08e-12!182;CL:0000542!2.24e-12!53;CL:0000051!2.24e-12!53;CL:0000838!4.24e-12!52;CL:0002032!1.09e-11!165;CL:0000837!1.09e-11!165;CL:0002031!2.60e-10!124;CL:0000236!6.98e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000236;3.53e-14;13!CL:0000542;5.17e-10;53!CL:0000945;9.23e-08;24!CL:0000791;1.58e-07;18!CL:0000789;1.58e-07;18!CL:0002419;1.58e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.29e-20,136;CL:0000037,5.93e-19,168;CL:0002087,6.99e-18,115;CL:0000988,4.05e-17,177;CL:0002032,6.02e-16,161;CL:0000837,6.02e-16,161;CL:0002031,1.12e-15,120;CL:0000838,1.45e-13,52;CL:0000542,3.62e-13,53;CL:0000051,3.62e-13,53;CL:0000236,5.74e-13,14;CL:0002393,3.26e-11,9;CL:0002397,3.26e-11,9;CL:0000791,8.00e-08,18;CL:0000789,8.00e-08,18;CL:0002420,8.00e-08,18;CL:0002419,8.00e-08,18;CL:0000790,8.00e-08,18;CL:0000945,8.80e-08,24;CL:0000826,8.80e-08,24 | |||
|ontology_enrichment_development_v019=CL:0000051;5.17e-10;53!CL:0000790;1.58e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.25e-11!115;UBERON:0001893!9.53e-10!34;UBERON:0002780!1.50e-09!41;UBERON:0001890!1.50e-09!41;UBERON:0006240!1.50e-09!41;UBERON:0002791!2.11e-09!33;UBERON:0001869!2.45e-09!32;UBERON:0002020!3.10e-09!34;UBERON:0003528!3.10e-09!34;UBERON:0002619!4.43e-09!22;UBERON:0003080!6.20e-09!42;UBERON:0001950!4.11e-08!20;UBERON:0000956!6.17e-08!25;UBERON:0000203!6.17e-08!25;UBERON:0001049!1.43e-07!57;UBERON:0005068!1.43e-07!57;UBERON:0006241!1.43e-07!57;UBERON:0007135!1.43e-07!57;UBERON:0000955!1.83e-07!69;UBERON:0006238!1.83e-07!69;UBERON:0001017!4.35e-07!82;UBERON:0002616!4.96e-07!59;UBERON:0000178!9.10e-07!15;UBERON:0000179!9.10e-07!15;UBERON:0000463!9.10e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;7.31e-09;32!UBERON:0003528;4.74e-08;34!UBERON:0002020;4.74e-08;34!UBERON:0001869;5.80e-08;32!UBERON:0002619;1.76e-07;22!UBERON:0000178;1.82e-07;15!UBERON:0000179;1.82e-07;15!UBERON:0000463;1.82e-07;15!UBERON:0002780;2.72e-07;41!UBERON:0001890;2.72e-07;41!UBERON:0001893;4.90e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002791,4.14e-09,32;UBERON:0003528,2.41e-08,34;UBERON:0002020,2.41e-08,34;UBERON:0001893,2.41e-08,34;UBERON:0001869,4.65e-08,32;UBERON:0002780,4.86e-08,41;UBERON:0001890,4.86e-08,41;UBERON:0003080,4.86e-08,41;UBERON:0006240,4.86e-08,41;UBERON:0002390,1.10e-07,98;UBERON:0003061,1.10e-07,98;UBERON:0002619,1.30e-07,22;UBERON:0002193,2.01e-07,108;UBERON:0000178,2.77e-07,15;UBERON:0000179,2.77e-07,15;UBERON:0000463,2.77e-07,15 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0.436882744260345,0.527533956456907,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0,0.273748850145768,0.251085279189606,0.152826811495903,0.246301768349837,0.236132343941038,0,1.91914699048606,0.464448369948228,0,0,0,0.46480320348181,2.41687695228617,1.46800219667424,0.553995408531877,1.60435557976113,1.73608696572681,0.671746422719773,0,0.257575567634187,0.290796477559129,0,0.485168122375632,0.232429036905685,0.822335776043652,0,0,0,0,0.689491361473237,0.645484683583826,1.35426486594342,0,0,0,0,0,0.639337125799041,0.329851300186716,0.199463657621632,0,1.16083695451434,1.70215567407342,1.24564449799115,0,0,0.217188844705117,0,1.10483290796269,0,1.26753171787165,1.4882300997553,2.93522103711726,1.23561494261145,1.95229960693958,1.76798145366788,4.27519115611873,3.38158351238453,2.73996230646951,1.75996244461323,2.18455444504853,6.22656477704488,4.69403244823158,2.40237592221607,2.29900975981793,1.32208974556972,0,1.70763890732835,4.11066032559657,3.05818582500183,1.32171328579026,1.68152568894461,0,1.37696839079683,2.75107533924415,2.05601498999509,0.334372990781356,0.32592226663359,2.36723902867367,0,0.779873198196215,0.294605907474837,0,0.812411591295047,1.15282187753108,0.910415432919148,2.46656856905514,0.829050053357545,1.44901542867526,1.33457906845854,1.60524496853828,3.1360657141493,1.81294948316106,2.29932296161153,2.06176467289578,0.506039384039006,1.91139248594458,5.85975108470777,1.90090408889675,0.150575119077773,0.383959833463255,0,0.947109008176067,0.821127996921047,1.61285394579786,3.4767225451856,3.62061009706997,0,0,0,0.361439152384566,0,0.289693037921647,0,0,0.472674085820339,0,0.087834785693126,0.261958150995425,0,0,1.29818957461873,0.348259474598534,0.26591592103773,3.10037811596945,0.571994910780128,1.48583000531826,0,0,0.347140501607594,0,0,0,0.208994966536811,0.258416759169329,1.06729878806013,0.33472061276467,0.805658634218294,0,0,0,0,0.535798369704479,0.22452937262617,0,0,0,0.183201743930407,5.27121669744253,0,0,0,0.25326102332916,0.264818361626438,0.573673241497627,0,0.560677600142307,0,0,0.311211035399766,0.269421344139376,0,0,0,0,0,0,0,0.23486899728753,0,0,0.204154171254893,1.22834317311768,0.206651562351531,0,0.247266929278557,0,0,0.336672227908132,0.125118519871964,0,0,0.30648779579902,0,0,0.717558542755448,0.213557388818567,0.423863802319124,0,0.206105058476878,0.257640540045629,0,0.675105328965065,0,0.252433774244115,0,0.323292113637624,0.355009592516614,0.10075209822764,0,0,0.272746120590835,0,0,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0.241011029883482,0.110293972732394,0,0,0.134831308160164,0,0.769494313892781,0,0,0,0,1.26755034821831,0,0.590789906681404,1.7658523976586,0,0.171567810298526,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0.144366447761074,0.925971025153221,0.190254152234598,0,0,0.984868024349589,0.702012795417713,0.594524649154913,0,0.16798212819886,0,0.179117045405697,0,0,0,0.176096868026452,0,0.432359860250884,0.25248486685276,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0,0.646358578788889,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0.199945982364114,1.2162378064119,0,2.10833939483032,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0,0.672510863961164,0.985153801009636,1.2937654491571,1.15508732651774,0,2.60279707715243,0.773288812777695,0.167516265334349,0,3.74503511973591,29.9161459204025,0.828831026872071,0.12269149171914,0,0,0.207970861530807,0,0.473107245101804,0.234282829985426,0,0,0,0,0,0.173767228936166,0,0,1.44737618286021,3.01999881146064,0.853820462427555,0,0,0,0.248107807818777,0.306923946576125,0,0.256278298511402,0,0,0,0,0,0.164254312027618,0.519254429183621,0.116210378459959,0,0.40101294060657,0.368323955743585,0.114814448164607,0.182091168006717,0,0.451199612907412,0.15403067420883,0,0,0,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0,0.219259876645935,0,0.256450125116389,0,0,0.721287081534056,0.366277859273374,0.660075999364704,0,0,1.6068392984416,0.096670718292122,0.154048617114644,0.307007349452259,0.137836572484531,0.322260734604821,0.435050081742686,0.0852266274161009,0.178064071293475,0.165284915360978,0,0.510450849978337,0,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0.372158369359667,0.316379424718726,0.38126038784765,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0,0,0,0.422215270595328,0,0,0,0.192444225451024,0.670302275535787,0,0.282431402330337,0,0,0,0,1.01489521846434,1.52927441428475,0.569647187174163,3.33524485640905,2.87953591160336,0.648473311192717,1.08006287447623,2.37937552888281,0,0,0.490080431962063,0.743212700502875,0.432807638929335,0.142283686696828,0.159426272728822,0.399158742865633,0.191505370132367,1.05836791361941,0.324621940274555,1.68478306868075,1.59764275323235,0.313359791546046,2.50634477090067,0.846458889008016,0.481764225311099,0.605399121573143,0.425846237690326,1.03051603426729,0,0,0.33369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| |||
|short_description=p3@NIN | |||
}} |
Revision as of 20:02, 11 January 2014
Short description: | p3@NIN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NIN_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | -240bp_to_ENST00000486200_5end |
EntrezGene: | NIN |
HGNC: | 14906 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.29e-20 | 136 |
hematopoietic stem cell | 5.93e-19 | 168 |
nongranular leukocyte | 6.99e-18 | 115 |
hematopoietic cell | 4.05e-17 | 177 |
hematopoietic oligopotent progenitor cell | 6.02e-16 | 161 |
hematopoietic multipotent progenitor cell | 6.02e-16 | 161 |
hematopoietic lineage restricted progenitor cell | 1.12e-15 | 120 |
lymphoid lineage restricted progenitor cell | 1.45e-13 | 52 |
lymphocyte | 3.62e-13 | 53 |
common lymphoid progenitor | 3.62e-13 | 53 |
B cell | 5.74e-13 | 14 |
intermediate monocyte | 3.26e-11 | 9 |
CD14-positive, CD16-positive monocyte | 3.26e-11 | 9 |
mature alpha-beta T cell | 8.00e-08 | 18 |
alpha-beta T cell | 8.00e-08 | 18 |
immature T cell | 8.00e-08 | 18 |
mature T cell | 8.00e-08 | 18 |
immature alpha-beta T cell | 8.00e-08 | 18 |
lymphocyte of B lineage | 8.80e-08 | 24 |
pro-B cell | 8.80e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
regional part of telencephalon | 4.14e-09 | 32 |
brain grey matter | 2.41e-08 | 34 |
gray matter | 2.41e-08 | 34 |
telencephalon | 2.41e-08 | 34 |
cerebral hemisphere | 4.65e-08 | 32 |
regional part of forebrain | 4.86e-08 | 41 |
forebrain | 4.86e-08 | 41 |
anterior neural tube | 4.86e-08 | 41 |
future forebrain | 4.86e-08 | 41 |
hematopoietic system | 1.10e-07 | 98 |
blood island | 1.10e-07 | 98 |
regional part of cerebral cortex | 1.30e-07 | 22 |
hemolymphoid system | 2.01e-07 | 108 |
blood | 2.77e-07 | 15 |
haemolymphatic fluid | 2.77e-07 | 15 |
organism substance | 2.77e-07 | 15 |