FFCP PHASE1:Hg19::chr1:43824639..43824659,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=991 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1723 | |||
|TSSclassifier=strong | |||
|UniProt=Q12834 | |||
|association_with_transcript=13bp_to_ENST00000310955,NM_001255,uc001cix.2_5end | |||
|coexpression_cluster_id=C2586 | |||
|description=CAGE_peak_1_at_CDC20_5end | |||
|id=chr1:43824639..43824659,+ | |||
|ontology_enrichment_celltype=CL:0000548!4.58e-26!679;CL:0000004!4.58e-26!679;CL:0000255!4.58e-26!679;CL:0000012!1.41e-25!682;CL:0000066!4.38e-23!254;CL:0002321!1.11e-17!248;CL:0000220!3.05e-17!246;CL:0000003!4.67e-14!722;CL:0000144!4.16e-13!625;CL:0000055!1.30e-12!180;CL:0000063!6.93e-11!578;CL:0000076!1.09e-10!62;CL:0000222!8.40e-10!119;CL:0002371!1.09e-08!591;CL:0000213!1.50e-07!57;CL:0000215!1.50e-07!57;CL:0000057!2.95e-07!75;CL:1000449!5.08e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000449;5.12e-08;15!CL:1000497;2.32e-07;17!CL:0002518;2.32e-07;17!CL:0002681;3.74e-07;12!CL:0002584;3.74e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.63e-23,253;CL:0002321,1.18e-17,250;CL:0000076,3.54e-10,63;CL:0000222,4.43e-10,121;CL:0000213,2.38e-08,58;CL:0000215,2.38e-08,58;CL:1000449,5.37e-08,15;CL:1000497,2.30e-07,17;CL:0002518,2.30e-07,17;CL:0002078,2.51e-07,45;CL:0002681,3.89e-07,12;CL:0002584,3.89e-07,12;CL:0000057,9.06e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.81e-27!235;DOID:14566!5.36e-26!239;DOID:0050686!2.88e-13!137;DOID:2531!9.57e-13!51;DOID:0060083!9.57e-13!51;DOID:0050687!1.86e-12!143;DOID:1240!7.65e-11!39;DOID:305!4.80e-10!106;DOID:8692!1.49e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.16e-08;39!DOID:8692;1.99e-08;31!DOID:2531;3.53e-08;51!DOID:0060083;3.53e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.18e-27,235;DOID:14566,4.50e-26,239;DOID:0050686,2.71e-13,137;DOID:2531,6.18e-13,51;DOID:0060083,6.18e-13,51;DOID:0050687,3.60e-12,143;DOID:1240,5.32e-11,39;DOID:305,6.77e-10,106;DOID:8692,1.14e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.08e-07!238;UBERON:0009142!1.08e-07!238;UBERON:0000487!4.48e-07!22;UBERON:0004211!5.08e-07!16;UBERON:0001285!5.08e-07!16;UBERON:0007684!5.08e-07!16;UBERON:0003220!5.08e-07!16;UBERON:0004208!5.08e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;5.12e-08;15!UBERON:0004819;5.12e-08;15!UBERON:0001285;5.12e-08;15!UBERON:0007684;5.12e-08;15!UBERON:0000353;8.07e-08;15!UBERON:0002113;3.58e-07;24!UBERON:0011143;3.58e-07;24!UBERON:0000487;3.70e-07;22!UBERON:0001225;3.74e-07;12!UBERON:0008987;3.74e-07;12!UBERON:0000490;4.50e-07;33!UBERON:0001851;5.02e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,5.37e-08,15;UBERON:0009773,5.37e-08,15;UBERON:0001231,5.37e-08,15;UBERON:0001285,5.37e-08,15;UBERON:0007684,5.37e-08,15;UBERON:0004208,5.37e-08,15;UBERON:0000353,8.17e-08,15;UBERON:0000487,3.61e-07,22;UBERON:0001225,3.89e-07,12;UBERON:0008987,3.89e-07,12;UBERON:0001851,5.66e-07,15;UBERON:0000490,6.40e-07,148;UBERON:0006555,6.98e-07,16;UBERON:0004819,6.98e-07,16 | |||
|phase1_expression=0.363356758541113,3.42560838225573,0.140954404095971,4.00293193412522,0,0,10.1319951267324,0,0.522371256399677,100.013712156114,318.895133763399,39.5378883555612,26.1129308446169,2.72285976512103,3.64537113300707,3.36162573225888,5.42425075221579,3.65155045193687,1.46379839637152,72.3951821491513,76.7042599078391,29.1512890974622,31.1997225972852,44.4841881486874,42.8100401018278,18.4920441910042,20.1967450046867,18.1821904834599,0,0,0.154816123316076,137.913183671839,137.65110488166,48.807529342016,28.6628642147116,17.9133232934151,3.81680571135301,0,0.401088894940283,0,0,0,0.257575567634187,0,0.755751887377619,0,0.232429036905685,0.411167888021826,1.23882548358041,0,0.256160706529101,0.945928919554341,1.03423704220986,0,1.35426486594342,0.941211697713023,0.272906150057846,0.449446968890169,0,0,0,0,0.598390972864896,0,0,0,0,0,0,0.434377689410233,3.02699751316684,0,0.949387162322653,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0,0.426730222566507,0,0.574752439954483,0,0,0,0,0,1.32171328579026,0,11.5888997301034,0.393419540227666,0.786021525498329,0.205601498999509,1.83905144929746,0.32592226663359,0,0,5.57052284425868,0.589211814949674,0.664601683750863,0,7.17311390463781,5.20237390239513,10.0307121808242,6.90875044464621,6.0858648004361,0.444859689486181,0,0,10.7643875562688,0,0,0.506039384039006,0,0,0,0.150575119077773,0.127986611154418,1.24930726552346,0,0,0.403213486449465,0.267440195783507,0.579297615531196,0,26.8280343881454,20.7137350186519,55.3001903148386,8.52274448081012,6.95263291011954,15.1104329939709,1.94653948121054,18.5288241641573,13.3037638477538,17.0399484244665,3.1434978119451,69.5804000638756,118.280237248233,0,0.522389211897802,0.132957960518865,0,0.571994910780128,0,37.1685701775739,50.7538411112613,46.16968671381,11.8714667804042,25.1699661725944,50.8968377589125,66.8783892917794,2.06733407335463,2.84613010149368,1.33888245105868,24.9754176607671,20.5273468543998,8.29810995663776,36.7663080345869,14.5825550618717,28.4866133226214,33.6794058939255,42.9049740641458,58.2603222370356,39.8691577018614,35.541138322499,0,0,58.0005089349571,0.496971951695318,27.2255600078846,0.662045904066094,41.3044733878292,47.5255632145798,23.5484592059769,19.2148192313469,10.1133694851036,6.84664277879486,19.6677581221745,51.1635756745126,10.4436625075003,2.30470369792,82.2468225736626,8.74048215124897,52.4834075820893,5.67904986096844,64.5889742540707,58.5980058612636,64.3264694696298,9.79940022023488,34.2707745299833,6.81950155760052,5.94001428641027,5.43987244412825,46.4182294588393,20.1213079708547,31.4788533094104,44.2919560346753,21.3339368922821,24.5827467693269,8.27517048657353,6.76071265079686,29.4923676216055,50.9466565356368,2.13557388818567,4.23863802319124,77.4235027897758,16.4884046781502,12.8820270022815,5.76962254627928,30.8860688001517,23.6771922541713,43.9234767184759,2.66944706062668,3.23292113637624,37.6310168067611,37.8827889335927,49.0030111777309,8.31021668602176,15.2737827530867,10.0381608386151,32.2010584182132,22.2650010780095,25.330279545555,26.4335690289195,26.9983310436922,43.7972830890996,20.3384392028761,5.78916844373597,40.0591271922194,0.464367928031979,0.721879481669586,32.1794496108375,39.9545715485101,38.3207537514736,31.2131942832675,40.9613354893724,39.8614640106642,28.3145747136345,35.3198637225623,33.473002654336,59.7905918245965,64.5112159495851,33.3374949178434,16.1709582524096,1.26755034821831,0.982827216677626,0.590789906681404,35.317047953172,8.97815601364729,15.6126707371658,5.26801369961403,46.084718835624,52.1745366816364,13.1475592125112,57.6680700399275,83.1947828223663,21.649701303791,10.3178060427818,1.87853910777315,6.0633908059651,10.1856812766854,5.70762456703795,41.0906286938823,32.6224741596052,0.246217006087397,2.10603838625314,10.7014436847884,7.49870671894216,5.20744597416465,16.3041361828744,25.2555034022032,70.6240470588928,95.0789044329724,13.7945706610864,6.33948724895227,1.03664057770386,0.288239906833923,1.38866676769018,3.93686944611448,10.3136874900735,23.4434894420094,10.2643467613623,6.78661451841935,14.416466776508,2.85826432630578,57.186853016134,48.3915676404941,20.1680286007613,0.129271715757778,10.7296933755565,45.646348638024,3.45719551560332,16.6411899058186,67.9027468052055,63.8321094104752,94.8462957297314,3.28849385413739,1.08524321078289,89.7331967091038,32.8993546136672,6.75244702610837,137.007674017483,0,0,2.7992437530976,1.2162378064119,0.502257091432126,0,6.23024624278115,2.29723871668228,27.1010119577365,9.26600362672507,11.0957214177207,17.18985247103,34.2980540620193,0,0.431255149719035,0.641715181398742,5.84417635711666,11.712586847186,7.73288812777695,6.03058555203656,5.74144876487847,0,0,0.414415513436035,0.858840442033979,2.00068208423871,6.51036056879365,1.66376689224646,8.02930449587228,3.78485796081443,4.09994952474496,0.300946099727719,0,4.1389228517002,33.2112799267718,30.0521744722976,14.1620291582975,8.2236486134351,6.86286847621712,0,0,0.320182673410333,16.6720164295443,24.9653159265746,45.66093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| |||
|short_description=p1@CDC20 | |||
}} |
Revision as of 18:11, 10 January 2014
Short description: | p1@CDC20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDC20_5end |
Coexpression cluster: | C2586_Alveolar_acute_Renal_Mesenchymal_Bronchial_Trabecular_Corneal |
Association with transcript: | 13bp_to_ENST00000310955, NM_001255, uc001cix.2_5end |
EntrezGene: | CDC20 |
HGNC: | 1723 |
UniProt: | Q12834 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.63e-23 | 253 |
embryonic cell | 1.18e-17 | 250 |
squamous epithelial cell | 3.54e-10 | 63 |
mesodermal cell | 4.43e-10 | 121 |
lining cell | 2.38e-08 | 58 |
barrier cell | 2.38e-08 | 58 |
epithelial cell of nephron | 5.37e-08 | 15 |
kidney cell | 2.30e-07 | 17 |
kidney epithelial cell | 2.30e-07 | 17 |
meso-epithelial cell | 2.51e-07 | 45 |
kidney cortical cell | 3.89e-07 | 12 |
renal cortical epithelial cell | 3.89e-07 | 12 |
fibroblast | 9.06e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 5.37e-08 | 15 |
renal tubule | 5.37e-08 | 15 |
nephron tubule | 5.37e-08 | 15 |
nephron | 5.37e-08 | 15 |
uriniferous tubule | 5.37e-08 | 15 |
nephrogenic mesenchyme | 5.37e-08 | 15 |
parenchyma | 8.17e-08 | 15 |
simple squamous epithelium | 3.61e-07 | 22 |
cortex of kidney | 3.89e-07 | 12 |
renal parenchyma | 3.89e-07 | 12 |
cortex | 5.66e-07 | 15 |
unilaminar epithelium | 6.40e-07 | 148 |
excretory tube | 6.98e-07 | 16 |
kidney epithelium | 6.98e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.18e-27 | 235 |
disease of cellular proliferation | 4.50e-26 | 239 |
organ system cancer | 2.71e-13 | 137 |
hematologic cancer | 6.18e-13 | 51 |
immune system cancer | 6.18e-13 | 51 |
cell type cancer | 3.60e-12 | 143 |
leukemia | 5.32e-11 | 39 |
carcinoma | 6.77e-10 | 106 |
myeloid leukemia | 1.14e-08 | 31 |