FFCP PHASE1:Hg19::chr2:34673099..34673137,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_at_chr2:34673099..34673137,+ | |||
|id=chr2:34673099..34673137,+ | |||
|ontology_enrichment_celltype=CL:0000064!8.46e-34!3;CL:0005012!8.46e-34!3;CL:0000067!8.46e-34!3;CL:0002304!8.46e-34!3;CL:0002605!9.09e-16!3;CL:0000133!9.90e-11!59;CL:0000075!3.17e-10!27;CL:0002322!8.49e-10!5;CL:0000710!4.39e-09!20;CL:0000221!8.10e-09!71;CL:0000128!2.86e-07!7;CL:0000126!2.86e-07!7;CL:0000127!2.86e-07!7;CL:0002453!2.86e-07!7;CL:0002549!8.06e-07!2;CL:0002319!8.19e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000047;5.15e-21;2!CL:0000064;1.71e-14;3!CL:0000067;1.71e-14;3!CL:0005012;1.71e-14;3!CL:0002304;1.71e-14;3!CL:0000306;3.26e-11;4!CL:0002222;3.26e-11;4!CL:0002224;3.26e-11;4!CL:0000075;7.24e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.40e-14,3;CL:0000067,1.40e-14,3;CL:0005012,1.40e-14,3;CL:0002304,1.40e-14,3;CL:0000306,3.10e-11,4;CL:0002222,3.10e-11,4;CL:0002224,3.10e-11,4;CL:0000075,6.82e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050619!1.96e-12!1;DOID:1357!1.96e-12!1 | |||
|ontology_enrichment_disease_v019=DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.53e-11,4;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0001778!8.46e-34!3;UBERON:0001775!8.46e-34!3;UBERON:0000488!1.54e-25!4;UBERON:0002203!2.97e-17!6;UBERON:0001768!2.97e-17!6;UBERON:0007625!1.63e-16!11;UBERON:0002200!2.25e-16!11;UBERON:0006876!2.25e-16!11;UBERON:0001801!4.95e-13!14;UBERON:0001764!1.96e-12!1;UBERON:0001825!1.96e-12!1;UBERON:0000019!1.16e-09!19;UBERON:0000047!1.16e-09!19;UBERON:0004088!1.16e-09!19;UBERON:0003072!1.16e-09!19;UBERON:0003071!1.16e-09!19;UBERON:0004128!1.16e-09!19;UBERON:0000970!3.46e-09!20;UBERON:0002104!9.30e-09!21;UBERON:0001456!9.30e-09!21;UBERON:0000020!5.19e-08!23;UBERON:0001032!1.10e-07!24;UBERON:0004456!1.10e-07!24;UBERON:0003947!8.06e-07!2;UBERON:0005629!8.06e-07!2;UBERON:0005358!8.06e-07!2;UBERON:0001886!8.06e-07!2;UBERON:0004086!8.06e-07!2;UBERON:0005282!8.06e-07!2;UBERON:0005281!8.06e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;2.17e-15;11!UBERON:0001778;1.71e-14;3!UBERON:0001775;1.71e-14;3!UBERON:0001801;2.51e-12;14!UBERON:0010077;3.26e-11;4!UBERON:0005389;3.26e-11;4!UBERON:0000488;3.26e-11;4!UBERON:0000484;3.26e-11;4!UBERON:0000965;3.26e-11;4!UBERON:0001803;3.26e-11;4!UBERON:0000019;2.36e-09;19!UBERON:0000047;2.36e-09;19!UBERON:0004088;2.36e-09;19!UBERON:0010230;2.36e-09;19!UBERON:0000970;6.17e-09;20!UBERON:0002104;1.48e-08;21!UBERON:0001456;1.48e-08;21!UBERON:0002203;6.55e-08;6!UBERON:0001768;6.55e-08;6!UBERON:0002200;6.55e-08;6!UBERON:0000020;6.75e-08;23!UBERON:0001032;1.31e-07;24!UBERON:0004456;1.31e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.88e-15,11;UBERON:0001778,1.40e-14,3;UBERON:0001775,1.40e-14,3;UBERON:0001801,2.24e-12,14;UBERON:0000488,2.80e-11,4;UBERON:0010077,3.10e-11,4;UBERON:0005389,3.10e-11,4;UBERON:0000484,3.10e-11,4;UBERON:0002546,3.10e-11,4;UBERON:0000965,3.10e-11,4;UBERON:0001803,3.10e-11,4;UBERON:0003073,3.10e-11,4;UBERON:0005426,3.10e-11,4;UBERON:0000019,5.70e-09,20;UBERON:0000047,5.70e-09,20;UBERON:0010312,5.70e-09,20;UBERON:0004088,5.70e-09,20;UBERON:0010230,5.70e-09,20;UBERON:0003072,5.70e-09,20;UBERON:0004128,5.70e-09,20;UBERON:0003071,5.70e-09,20;UBERON:0000970,1.37e-08,21;UBERON:0002104,1.37e-08,21;UBERON:0001456,3.04e-08,22;UBERON:0002203,5.92e-08,6;UBERON:0001768,5.92e-08,6;UBERON:0002200,5.92e-08,6;UBERON:0000020,1.23e-07,24;UBERON:0001032,1.23e-07,24;UBERON:0004456,1.23e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.958120975510189,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89069634328136,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0.116193942869518,0,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27523445472584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.005314172831,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:34673099..34673137,+ | |||
}} |
Revision as of 02:32, 21 January 2014
Short description: | p@chr2:34673099..34673137, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:34673099..34673137, + |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.40e-14 | 3 |
ciliated epithelial cell | 1.40e-14 | 3 |
multi-ciliated epithelial cell | 1.40e-14 | 3 |
non-pigmented ciliary epithelial cell | 1.40e-14 | 3 |
crystallin accumulating cell | 3.10e-11 | 4 |
vertebrate lens cell | 3.10e-11 | 4 |
lens epithelial cell | 3.10e-11 | 4 |
columnar/cuboidal epithelial cell | 6.82e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 1.88e-15 | 11 |
ciliary epithelium | 1.40e-14 | 3 |
ciliary body | 1.40e-14 | 3 |
anterior segment of eyeball | 2.24e-12 | 14 |
atypical epithelium | 2.80e-11 | 4 |
cuboidal epithelium | 3.10e-11 | 4 |
transparent eye structure | 3.10e-11 | 4 |
simple cuboidal epithelium | 3.10e-11 | 4 |
cranial placode | 3.10e-11 | 4 |
lens of camera-type eye | 3.10e-11 | 4 |
epithelium of lens | 3.10e-11 | 4 |
lens placode | 3.10e-11 | 4 |
lens vesicle | 3.10e-11 | 4 |
camera-type eye | 5.70e-09 | 20 |
simple eye | 5.70e-09 | 20 |
immature eye | 5.70e-09 | 20 |
ocular region | 5.70e-09 | 20 |
eyeball of camera-type eye | 5.70e-09 | 20 |
optic cup | 5.70e-09 | 20 |
optic vesicle | 5.70e-09 | 20 |
eye primordium | 5.70e-09 | 20 |
eye | 1.37e-08 | 21 |
visual system | 1.37e-08 | 21 |
face | 3.04e-08 | 22 |
vasculature of eye | 5.92e-08 | 6 |
uvea | 5.92e-08 | 6 |
vasculature of head | 5.92e-08 | 6 |
sense organ | 1.23e-07 | 24 |
sensory system | 1.23e-07 | 24 |
entire sense organ system | 1.23e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.53e-11 | 4 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |