FFCP PHASE1:Hg19::chr7:3340816..3340827,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221935 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19307 | |||
|TSSclassifier=not | |||
|UniProt=Q7Z5N4,C9JV80 | |||
|association_with_transcript=-252bp_to_ENST00000404826,ENST00000446104,NM_152744,uc003smx.2_5end | |||
|description=CAGE_peak_3_at_SDK1_5end | |||
|id=chr7:3340816..3340827,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002605;1.14e-14;3!CL:0000128;8.14e-11;7!CL:0000126;8.14e-11;7!CL:0000127;8.14e-11;7!CL:0000333;9.44e-09;5!CL:0002564;5.41e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.11e-14,3;CL:0000128,7.22e-11,7;CL:0000126,7.22e-11,7;CL:0000127,7.22e-11,7;CL:0002453,7.22e-11,7;CL:0000333,1.59e-08,41;CL:0002564,6.14e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!1.56e-07!10;DOID:3095!2.23e-07!22;DOID:2994!2.23e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:171;2.60e-16;10!DOID:3095;2.96e-12;22!DOID:2994;2.96e-12;22!DOID:169;2.31e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:171,5.32e-16,10;DOID:3095,4.36e-12,22;DOID:2994,4.36e-12,22;DOID:169,4.48e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002346!1.43e-11!90;UBERON:0000073!5.52e-11!94;UBERON:0001016!5.52e-11!94;UBERON:0001017!8.57e-11!82;UBERON:0005743!2.34e-10!86;UBERON:0000153!2.70e-10!129;UBERON:0007811!2.70e-10!129;UBERON:0000924!2.80e-10!173;UBERON:0006601!2.80e-10!173;UBERON:0007023!5.80e-10!115;UBERON:0002020!7.54e-10!34;UBERON:0003528!7.54e-10!34;UBERON:0000955!8.32e-10!69;UBERON:0006238!8.32e-10!69;UBERON:0003075!1.70e-09!86;UBERON:0007284!1.70e-09!86;UBERON:0000033!2.17e-09!123;UBERON:0001893!3.25e-09!34;UBERON:0003056!4.98e-09!61;UBERON:0002791!4.99e-09!33;UBERON:0001049!8.58e-09!57;UBERON:0005068!8.58e-09!57;UBERON:0006241!8.58e-09!57;UBERON:0007135!8.58e-09!57;UBERON:0002780!8.61e-09!41;UBERON:0001890!8.61e-09!41;UBERON:0006240!8.61e-09!41;UBERON:0001869!1.06e-08!32;UBERON:0004121!1.10e-08!169;UBERON:0002616!1.13e-08!59;UBERON:0000064!1.62e-08!219;UBERON:0003080!2.18e-08!42;UBERON:0000956!8.07e-08!25;UBERON:0000203!8.07e-08!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002050;8.29e-16;5!UBERON:0005423;8.29e-16;5!UBERON:0002346;2.00e-11;4!UBERON:0000923;2.00e-11;4!UBERON:0010316;2.00e-11;4!UBERON:0005291;2.00e-11;4!UBERON:0000013;9.44e-09;5!UBERON:0002410;9.44e-09;5!UBERON:0000922;6.03e-08;49!UBERON:0002242;5.41e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.11e-08,5;UBERON:0002410,2.11e-08,5;UBERON:0004121,1.07e-07,171;UBERON:0000924,1.07e-07,171;UBERON:0006601,1.07e-07,171;UBERON:0002346,2.42e-07,86;UBERON:0002242,6.14e-07,3;UBERON:0003068,6.14e-07,3;UBERON:0002328,6.14e-07,3;UBERON:0004880,6.14e-07,3;UBERON:0001016,8.96e-07,89 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0.783556884599516,0,0,0,0,0.37129905888014,0,0,0,0,0,0,0,0.313454721478088,2.0036519099174,1.23186982565596,1.25542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0,0,0.401088894940283,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0.329851300186716,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0.32592226663359,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,1.04535523804977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0.261958150995425,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0.302714855289863,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0,0.368502951935304,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.818238361772504,0,0,0,0.116193942869518,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.8231480226628,0,0,0,0,0,0.122988438543114,0.514703430895577,0,0,0,0.0925884451585296,0,1.03993478527958,0,1.15930404975077,0.117408694235822,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0.126995788584338,0,1.17217447210047,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,0.12269149171914,1.00034104211935,1.62759014219841,0,0.178428988797162,0,0,0,0,0,0,0,0.260650843404249,0,0,0,0.215714200818617,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0.229628896329213,0,0,0.902399225814824,0.308061348417659,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0.671624264166535,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0.255897791311334,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0,0,0,0.975267478179181,0,0,0,0,1.13008116620243,0,0,0,0,0.655894752046633,0,0,0,0,0.294747123039363,0,0,0,1.64647446479951,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0.47748896947538,0,0,0,0,0,0,0,1.19548792950642,0.828851746593443,1.25966373927138,1.32949287252801,0,0.311039587661807,0,0.358042349351218,0,0.394573622547734,0,0,1.93866549219044,0,1.99613798001194,0,0,0,0,0,0.236387681767936,0.689486746482929,1.16641845353302,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0.278847488557207,0.230850775511391,0,1.84451123510448,0.538545866458633,0.108647371922008,0.957003479195758,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,1.51472047819464,0,0.707660516026713,0.611030144933625,0,0,0.104421949505455,0.134802265961354,0,0.468528891450678,0,0,0,0,1.20990716048664,0.61214552326098,0.252746318513952,0.150323419414493,0.311064574191741,0,0,0,0,0,0,0.173559738335131,0,0,0.698906672968121,0,0,0,0,0.193978032976839,0,0.90392296312213,0,0,0.379864775735272,0,0,0,0,0,0.458146384663663,0.343189995723929,0,0,0,0.407712618220842,0,0.203996435272644,0,1.20084057741958,0.136905378891993,0,0,0.262887354279314,0.558564802544508,0,0,0,0,0.223171457441873,0.335917362433631,0,0,0.472699093843342,0.412079291905832,0.202210631562555,0,0,0,0.544813624446302,0.160753148465019,0.687697182986169,0.83088067605837,0,0,0.425246896606173,0.335434687599266,0.0788057072991982,0.577000469484979,0,0.35857467866569,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.39669780522807,0,0.704815022316672,0,0,0.414239055347196,0,0,0.974340787047167,0,0,0.2506898940227,0,0,3.29813602125492,0,0.366078794705889,0.500763722825999,0,0.110929051536852,0.372578417648301,0,0,0,0,0,0.936669811613763,1.01444720027578,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0.310525913752519,0,0.265841714557995,0,0.150257608997218,0,0,0.363697318405119,0,0,0,0.400027764663154,0,0,0,0.192619830407303,0,0.521988583930423,0,0.231522474323834,0.244736704506468,0.179088841081487,0,0,0,0,0,0.256241518587947,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15104934173287,0,1.10086159299127,0.655257829152084,2.54598794931038,2.55089904122019,1.36329340684902,1.11728983594649,0,0.630893960010027,0.80057074828547,0,0.6124909547064,0.256916900385838,0,0.159633859057151,0.205116364240755,1.51243017733031,0,0.322951291263702,0,0,0.353909170043221,0,0.115525666150338,0,0.690359926060101,0,0.150420656698515,0,0.781514011233092,1.57144016688853,0,0,0.0675375846183947,0,0.206686796501184,0.317079050969534,2.7348740450911,0,0.496211178389294,0.351742488719241,0.383287282918786,0,0,0,1.13831095675649,0.0887023701626388,0,0,0.0679697329768317,0.0657727735628491,0.472775363535873,0.222462803784138,0.313972371402056,0,0,0,0,0,0.500335809236594,0.158013611732727,0,0.173858272302579,0.801711364730253,0,0,0,0,0,0,0.423387050190929,0.4582137370881,0,0,0.559277158988962,0,0.243835849964539,0,0.102662806856247,1.1598144313382,2.91426595835484,0.701818390386317,4.3769170535501,0,0.90356865631168,0,0,0.0771741581079447,0.218559560503957,1.41095188908457,0.490296643507811,0.235676547101626,0,0,0.8453114551668,0,1.12780701575824,0.837952543656503,0,0.357107877211315,0,0,1.46067277649303,0.458729283404541,0.143339583151451,0,0.271965960763659,3.05445483238264,0,0,0.462175628631418,0,0.126166424835079,1.09265571963696,0,0,0,0.0918948995348449,0,0.378893491091197,0.535928260312357,0,0.103432995861895,0.639701945702943,0.476128862927481,0.129177819672012,0.372448285775147,0.33639558774184,0,0.202117188958219,0.217716747896961,0.342233301085281,0.471464371102113,0.78894425931944,0.332660356546013,1.38385556638657,0,0,0,0,0.122241444182866,3.66206560484165,0,0.201273793591026,0 | |||
|short_description=p3@SDK1 | |||
}} |
Revision as of 15:30, 22 January 2014
Short description: | p3@SDK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SDK1_5end |
Coexpression cluster: | NA |
Association with transcript: | -252bp_to_ENST00000404826, ENST00000446104, NM_152744, uc003smx.2_5end |
EntrezGene: | SDK1 |
HGNC: | 19307 |
UniProt: | Q7Z5N4C9JV80 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.11e-14 | 3 |
oligodendrocyte | 7.22e-11 | 7 |
macroglial cell | 7.22e-11 | 7 |
astrocyte | 7.22e-11 | 7 |
oligodendrocyte precursor cell | 7.22e-11 | 7 |
migratory neural crest cell | 1.59e-08 | 41 |
nucleus pulposus cell of intervertebral disc | 6.14e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.11e-08 | 5 |
autonomic nervous system | 2.11e-08 | 5 |
ectoderm-derived structure | 1.07e-07 | 171 |
ectoderm | 1.07e-07 | 171 |
presumptive ectoderm | 1.07e-07 | 171 |
neurectoderm | 2.42e-07 | 86 |
nucleus pulposus | 6.14e-07 | 3 |
axial mesoderm | 6.14e-07 | 3 |
notochord | 6.14e-07 | 3 |
chordamesoderm | 6.14e-07 | 3 |
nervous system | 8.96e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 5.32e-16 | 10 |
germ cell and embryonal cancer | 4.36e-12 | 22 |
germ cell cancer | 4.36e-12 | 22 |
neuroendocrine tumor | 4.48e-07 | 6 |