FFCP PHASE2:Hg19::chr1:197896790..197896802,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:56956 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding |HGNC=HGNC:14222 |TSSclassifier=st...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=56956 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | ||
|HGNC= | |HGNC=14222 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 13:33, 19 September 2015
| Short description: | p16@LHX9 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_16_at_LHX9_5end |
| Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
| Association with transcript: | -29bp_to_AJ277914_5end |
| EntrezGene: | LHX9 |
| HGNC: | 14222 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p16@LHX9 |
|---|
0.0
0.5
1.0
1.5
2.0
2.5
3.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| chondroblast | 7.67e-18 | 6 |
| chondrocyte | 7.67e-18 | 6 |
| neuronal stem cell | 1.07e-13 | 8 |
| GAG secreting cell | 2.19e-12 | 9 |
| carbohydrate secreting cell | 2.19e-12 | 9 |
| extracellular matrix secreting cell | 5.55e-08 | 15 |
Showing 1 to 6 of 6 entries
| Ontology term | p-value | n |
|---|---|---|
| cartilage tissue | 4.27e-34 | 3 |
| skeletal tissue | 4.27e-34 | 3 |
Showing 1 to 2 of 2 entries
| Ontology term | p-value | n |
|---|---|---|
| chondrosarcoma | 9.37e-99 | 1 |
| extraosseous chondrosarcoma | 9.37e-99 | 1 |
| myxoid chondrosarcoma | 9.37e-99 | 1 |
| extraskeletal myxoid chondrosarcoma | 9.37e-99 | 1 |
| connective tissue cancer | 7.67e-18 | 6 |
| musculoskeletal system cancer | 7.67e-18 | 6 |
Showing 1 to 6 of 6 entries
