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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0682179984609265,0.0411126530948397,0.100783889465809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511849857970239,0.298605602657084,0.233118029693616,0,0,0,0,0,1.29782537629981,1.21645088194972,0,0,0,0,0,0,0,0,0,0,0,0,1.25026942172991,1.00482793735745,1.6759016675561,0.0889077662030289,0,0,0,0,0,0,0,0.265446745265214,1.30294093990871,1.36326986913242,1.30277099762853,0,0.870188687181952,0.549990024798021,0,0,0,0,0.196153902644494,0,0.159965940640837,0.488807821845578,0.206537407802916,0.454070665685335,0.279743541756844,0.313508328902057,0.0973729612719386,0.0959343498639139,0,0,0.716498999812,0.475318622711075,0.171689969376673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858067833497223,0.374469112422398,0.177665042710266,0,0,0,0,0,0,0,0,0,0.155680902177084,0.244629442017072,0.184081677162945,0.157877097374896,0.106546909924599,0.12977112683364,0.149700657682213,0.932641267510068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.771266216549529,0.578276963025132,0.405928251974024,0.0797901069290224,0.221970542984498,0.140021075036539,0,0.123654991486488,0.0973736644748266,0,0.0773548534010084,0,0,0,1.05811213147939,0.937249526703743,0.821866243419102,0.798991217204348,0.880492585121905,0.989760186634375,0.515412205110751,0.526567011288014,0.582742366403186,0.508010807689823,0,0.125054963696189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19547738911348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173700201812769,0.190856315052995,0,0,0,0.848761777158262,0,0,0,0,0,0,0,0,0,0,0.357450904250214,0.80222405388814,0.645483788054495,0.616415888723146,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719044921483595,0,0,0,0,0,0,0.231473445080683,0,0.0865478886078475,0.174542051472679,0.389729387085713,0.399296902443608,0.316882265149919,0.219208114021758,0,0.765001915518893,0,0,0,0,0,0,0,0,0,0,0.0637715600712905,0,0,0,0,0,0,0,0.0529304404135566,0,0,0.397099350028893,0.42399662042759,0.335800212476832,0.467962699052795,0.429681439811579,0.337174108072103,0.408655843673153,0.118786370903246,0.0939761495634833,0.270466881039779,0,0,0,0,0,0,0,0,0,0,0.041718751492076,0.0403878614760544,0,0,0,0,0.0373124733443448,0,0,0,0.0730404042754446,0,0,0,0,0,0,0,0,0,0,0,0,1.02744026290595,0.97218072219923,0.798839910910627,0.431644681033775,0.519269321997868,0.392828464370476,0.276228948705051,0.349512651940653,0.292866674034965,0.245041507634362,0.304041610947991,0.328737911309532,0.286998454898945,0.292339661913287,0.36567809424321,0.29061047861444,0.284898528886841,0.198307218446548,0.422974330955965,0.337976384932725,0.485326054812979,0.383780629875634,0.290867826191594,0.335010604487386,0.308607773527825,0.401928084859274,0.321716015203304,0.31223636859556,0.225056016595504,0.326803611095607,0.233455586685672,0.201677520895557,0.259704250749409,0.319013960014458,0.371131851656515,0,0.336391290495296,0.316883139079103,0.542420599934461,0.274703995207021,0.489509971759237
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|gostat_on_MCL_coexpression=GO:0007389;pattern specification process;0.00803872071608881;15427,209448!GO:0005667;transcription factor complex;0.00803872071608881;15427,209448!GO:0043565;sequence-specific DNA binding;0.00803872071608881;15427,209448!GO:0009887;organ morphogenesis;0.00803872071608881;15427,209448!GO:0044451;nucleoplasm part;0.00803872071608881;15427,209448!GO:0005654;nucleoplasm;0.00803872071608881;15427,209448!GO:0031981;nuclear lumen;0.00963684767822337;15427,209448!GO:0031974;membrane-enclosed lumen;0.00963684767822337;15427,209448!GO:0043233;organelle lumen;0.00963684767822337;15427,209448!GO:0003700;transcription factor activity;0.0104645519890221;15427,209448!GO:0044428;nuclear part;0.0139359142684202;15427,209448!GO:0009653;anatomical structure morphogenesis;0.0165973635308497;15427,209448!GO:0048513;organ development;0.0218070536961134;15427,209448!GO:0043234;protein complex;0.0259469384460429;15427,209448!GO:0048731;system development;0.0259469384460429;15427,209448!GO:0006355;regulation of transcription, DNA-dependent;0.0259469384460429;15427,209448!GO:0006351;transcription, DNA-dependent;0.0259469384460429;15427,209448!GO:0032774;RNA biosynthetic process;0.0259469384460429;15427,209448!GO:0003677;DNA binding;0.0259469384460429;15427,209448!GO:0045449;regulation of transcription;0.0259469384460429;15427,209448!GO:0048856;anatomical structure development;0.0259469384460429;15427,209448!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0259469384460429;15427,209448!GO:0006350;transcription;0.0259469384460429;15427,209448!GO:0032991;macromolecular complex;0.0259469384460429;15427,209448!GO:0010468;regulation of gene expression;0.0259469384460429;15427,209448!GO:0031323;regulation of cellular metabolic process;0.0269958749702859;15427,209448!GO:0007275;multicellular organismal development;0.0269958749702859;15427,209448!GO:0019222;regulation of metabolic process;0.0269958749702859;15427,209448!GO:0016070;RNA metabolic process;0.0274591125508986;15427,209448!GO:0044446;intracellular organelle part;0.0275272898319057;15427,209448!GO:0044422;organelle part;0.0275272898319057;15427,209448!GO:0016563;transcription activator activity;0.0327528128633795;15427!GO:0010467;gene expression;0.0345577832018417;15427,209448!GO:0003676;nucleic acid binding;0.0351794894932043;15427,209448!GO:0032502;developmental process;0.0363983845173449;15427,209448!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0385869400193705;15427,209448!GO:0050794;regulation of cellular process;0.0431785730303571;15427,209448!
|gostat_on_MCL_coexpression=GO:0007389;pattern specification process;0.00803872071608881;15427,209448!GO:0005667;transcription factor complex;0.00803872071608881;15427,209448!GO:0043565;sequence-specific DNA binding;0.00803872071608881;15427,209448!GO:0009887;organ morphogenesis;0.00803872071608881;15427,209448!GO:0044451;nucleoplasm part;0.00803872071608881;15427,209448!GO:0005654;nucleoplasm;0.00803872071608881;15427,209448!GO:0031981;nuclear lumen;0.00963684767822337;15427,209448!GO:0031974;membrane-enclosed lumen;0.00963684767822337;15427,209448!GO:0043233;organelle lumen;0.00963684767822337;15427,209448!GO:0003700;transcription factor activity;0.0104645519890221;15427,209448!GO:0044428;nuclear part;0.0139359142684202;15427,209448!GO:0009653;anatomical structure morphogenesis;0.0165973635308497;15427,209448!GO:0048513;organ development;0.0218070536961134;15427,209448!GO:0043234;protein complex;0.0259469384460429;15427,209448!GO:0048731;system development;0.0259469384460429;15427,209448!GO:0006355;regulation of transcription, DNA-dependent;0.0259469384460429;15427,209448!GO:0006351;transcription, DNA-dependent;0.0259469384460429;15427,209448!GO:0032774;RNA biosynthetic process;0.0259469384460429;15427,209448!GO:0003677;DNA binding;0.0259469384460429;15427,209448!GO:0045449;regulation of transcription;0.0259469384460429;15427,209448!GO:0048856;anatomical structure development;0.0259469384460429;15427,209448!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0259469384460429;15427,209448!GO:0006350;transcription;0.0259469384460429;15427,209448!GO:0032991;macromolecular complex;0.0259469384460429;15427,209448!GO:0010468;regulation of gene expression;0.0259469384460429;15427,209448!GO:0031323;regulation of cellular metabolic process;0.0269958749702859;15427,209448!GO:0007275;multicellular organismal development;0.0269958749702859;15427,209448!GO:0019222;regulation of metabolic process;0.0269958749702859;15427,209448!GO:0016070;RNA metabolic process;0.0274591125508986;15427,209448!GO:0044446;intracellular organelle part;0.0275272898319057;15427,209448!GO:0044422;organelle part;0.0275272898319057;15427,209448!GO:0016563;transcription activator activity;0.0327528128633795;15427!GO:0010467;gene expression;0.0345577832018417;15427,209448!GO:0003676;nucleic acid binding;0.0351794894932043;15427,209448!GO:0032502;developmental process;0.0363983845173449;15427,209448!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0385869400193705;15427,209448!GO:0050794;regulation of cellular process;0.0431785730303571;15427,209448!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000489!9.30e-14!21;UBERON:0002113!1.53e-09!14;UBERON:0003918!1.53e-09!14;UBERON:0011143!1.53e-09!14;UBERON:0005095!1.53e-09!14;UBERON:0007687!1.53e-09!14;UBERON:0000991!3.82e-08!18;UBERON:0005564!3.82e-08!18;UBERON:0006554!4.15e-08!18;UBERON:0005156!1.19e-07!26;UBERON:0000990!1.19e-07!26;UBERON:0001008!2.11e-07!19;UBERON:0004176!2.18e-07!17;UBERON:0009196!2.18e-07!17;UBERON:0009117!2.18e-07!17;UBERON:0003133!6.73e-07!24;UBERON:0002240!7.16e-07!6;UBERON:0005174!7.16e-07!6;UBERON:0001137!7.16e-07!6
}}
}}

Revision as of 19:17, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:102797288..102797302,+p1@Hoxc10
Mm9::chr15:102812013..102812029,+p@chr15:102812013..102812029
+
Mm9::chr15:102812035..102812072,+p@chr15:102812035..102812072
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007389pattern specification process0.00803872071608881
GO:0005667transcription factor complex0.00803872071608881
GO:0043565sequence-specific DNA binding0.00803872071608881
GO:0009887organ morphogenesis0.00803872071608881
GO:0044451nucleoplasm part0.00803872071608881
GO:0005654nucleoplasm0.00803872071608881
GO:0031981nuclear lumen0.00963684767822337
GO:0031974membrane-enclosed lumen0.00963684767822337
GO:0043233organelle lumen0.00963684767822337
GO:0003700transcription factor activity0.0104645519890221
GO:0044428nuclear part0.0139359142684202
GO:0009653anatomical structure morphogenesis0.0165973635308497
GO:0048513organ development0.0218070536961134
GO:0043234protein complex0.0259469384460429
GO:0048731system development0.0259469384460429
GO:0006355regulation of transcription, DNA-dependent0.0259469384460429
GO:0006351transcription, DNA-dependent0.0259469384460429
GO:0032774RNA biosynthetic process0.0259469384460429
GO:0003677DNA binding0.0259469384460429
GO:0045449regulation of transcription0.0259469384460429
GO:0048856anatomical structure development0.0259469384460429
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0259469384460429
GO:0006350transcription0.0259469384460429
GO:0032991macromolecular complex0.0259469384460429
GO:0010468regulation of gene expression0.0259469384460429
GO:0031323regulation of cellular metabolic process0.0269958749702859
GO:0007275multicellular organismal development0.0269958749702859
GO:0019222regulation of metabolic process0.0269958749702859
GO:0016070RNA metabolic process0.0274591125508986
GO:0044446intracellular organelle part0.0275272898319057
GO:0044422organelle part0.0275272898319057
GO:0016563transcription activator activity0.0327528128633795
GO:0010467gene expression0.0345577832018417
GO:0003676nucleic acid binding0.0351794894932043
GO:0032502developmental process0.0363983845173449
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0385869400193705
GO:0050794regulation of cellular process0.0431785730303571



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
cavitated compound organ9.30e-1421
kidney1.53e-0914
kidney mesenchyme1.53e-0914
upper urinary tract1.53e-0914
kidney rudiment1.53e-0914
kidney field1.53e-0914
gonad3.82e-0818
gonad primordium3.82e-0818
urinary system structure4.15e-0818
reproductive structure1.19e-0726
reproductive system1.19e-0726
renal system2.11e-0719
external genitalia2.18e-0717
indifferent external genitalia2.18e-0717
indifferent gonad2.18e-0717
reproductive organ6.73e-0724
spinal cord7.16e-076
dorsal region element7.16e-076
dorsum7.16e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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