FFCP PHASE1:Hg19::chr14:58332663..58332678,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.28e-85;3!UBERON:0007123;6.21e-07;5 | |ontology_enrichment_development_v019=UBERON:0006215;2.28e-85;3!UBERON:0007123;6.21e-07;5 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;2.35e-08;4 | |ontology_enrichment_disease_v019=DOID:5409;2.35e-08;4 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,2.11e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.24e-47!57;UBERON:0005068!1.24e-47!57;UBERON:0006241!1.24e-47!57;UBERON:0007135!1.24e-47!57;UBERON:0005743!1.39e-43!86;UBERON:0001017!2.60e-43!82;UBERON:0002616!4.22e-39!59;UBERON:0000073!1.07e-38!94;UBERON:0001016!1.07e-38!94;UBERON:0000955!2.17e-34!69;UBERON:0006238!2.17e-34!69;UBERON:0003075!1.02e-33!86;UBERON:0007284!1.02e-33!86;UBERON:0002346!7.13e-32!90;UBERON:0007023!1.07e-30!115;UBERON:0002020!1.16e-27!34;UBERON:0003528!1.16e-27!34;UBERON:0002780!1.36e-27!41;UBERON:0001890!1.36e-27!41;UBERON:0006240!1.36e-27!41;UBERON:0001893!3.39e-27!34;UBERON:0003080!7.80e-27!42;UBERON:0001869!6.41e-26!32;UBERON:0002791!6.42e-25!33;UBERON:0003076!1.27e-23!15;UBERON:0003057!1.27e-23!15;UBERON:0002619!1.69e-22!22;UBERON:0001950!5.31e-21!20;UBERON:0000153!1.43e-19!129;UBERON:0007811!1.43e-19!129;UBERON:0000956!1.48e-19!25;UBERON:0000203!1.48e-19!25;UBERON:0000033!2.99e-19!123;UBERON:0004733!3.17e-19!12;UBERON:0002028!3.17e-19!12;UBERON:0007277!3.17e-19!12;UBERON:0003056!4.67e-19!61;UBERON:0004121!6.33e-18!169;UBERON:0004732!1.24e-17!13;UBERON:0000924!2.56e-17!173;UBERON:0006601!2.56e-17!173;UBERON:0002680!5.19e-15!9;UBERON:0001895!5.19e-15!9;UBERON:0010092!5.19e-15!9;UBERON:0000025!1.18e-12!194;UBERON:0000988!4.67e-12!3;UBERON:0002298!1.39e-11!8;UBERON:0002308!1.33e-09!9;UBERON:0000125!1.33e-09!9;UBERON:0004111!1.88e-09!241;UBERON:0000200!4.50e-09!6;UBERON:0000477!9.16e-09!286;UBERON:0002148!1.61e-08!2;UBERON:0009662!1.61e-08!2;UBERON:0000369!3.68e-08!4;UBERON:0002435!3.68e-08!4;UBERON:0000204!3.68e-08!4;UBERON:0010082!3.68e-08!4;UBERON:0000483!3.97e-08!309;UBERON:0000119!5.76e-08!312;UBERON:0001871!4.27e-07!7;UBERON:0000349!5.25e-07!5;UBERON:0001872!6.86e-07!5;UBERON:0002021!7.01e-07!5 | |ontology_enrichment_uberon=UBERON:0001049!1.24e-47!57;UBERON:0005068!1.24e-47!57;UBERON:0006241!1.24e-47!57;UBERON:0007135!1.24e-47!57;UBERON:0005743!1.39e-43!86;UBERON:0001017!2.60e-43!82;UBERON:0002616!4.22e-39!59;UBERON:0000073!1.07e-38!94;UBERON:0001016!1.07e-38!94;UBERON:0000955!2.17e-34!69;UBERON:0006238!2.17e-34!69;UBERON:0003075!1.02e-33!86;UBERON:0007284!1.02e-33!86;UBERON:0002346!7.13e-32!90;UBERON:0007023!1.07e-30!115;UBERON:0002020!1.16e-27!34;UBERON:0003528!1.16e-27!34;UBERON:0002780!1.36e-27!41;UBERON:0001890!1.36e-27!41;UBERON:0006240!1.36e-27!41;UBERON:0001893!3.39e-27!34;UBERON:0003080!7.80e-27!42;UBERON:0001869!6.41e-26!32;UBERON:0002791!6.42e-25!33;UBERON:0003076!1.27e-23!15;UBERON:0003057!1.27e-23!15;UBERON:0002619!1.69e-22!22;UBERON:0001950!5.31e-21!20;UBERON:0000153!1.43e-19!129;UBERON:0007811!1.43e-19!129;UBERON:0000956!1.48e-19!25;UBERON:0000203!1.48e-19!25;UBERON:0000033!2.99e-19!123;UBERON:0004733!3.17e-19!12;UBERON:0002028!3.17e-19!12;UBERON:0007277!3.17e-19!12;UBERON:0003056!4.67e-19!61;UBERON:0004121!6.33e-18!169;UBERON:0004732!1.24e-17!13;UBERON:0000924!2.56e-17!173;UBERON:0006601!2.56e-17!173;UBERON:0002680!5.19e-15!9;UBERON:0001895!5.19e-15!9;UBERON:0010092!5.19e-15!9;UBERON:0000025!1.18e-12!194;UBERON:0000988!4.67e-12!3;UBERON:0002298!1.39e-11!8;UBERON:0002308!1.33e-09!9;UBERON:0000125!1.33e-09!9;UBERON:0004111!1.88e-09!241;UBERON:0000200!4.50e-09!6;UBERON:0000477!9.16e-09!286;UBERON:0002148!1.61e-08!2;UBERON:0009662!1.61e-08!2;UBERON:0000369!3.68e-08!4;UBERON:0002435!3.68e-08!4;UBERON:0000204!3.68e-08!4;UBERON:0010082!3.68e-08!4;UBERON:0000483!3.97e-08!309;UBERON:0000119!5.76e-08!312;UBERON:0001871!4.27e-07!7;UBERON:0000349!5.25e-07!5;UBERON:0001872!6.86e-07!5;UBERON:0002021!7.01e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;3.16e-43;6!UBERON:0002680;3.84e-29;9!UBERON:0001895;3.84e-29;9!UBERON:0004733;4.42e-22;12!UBERON:0002028;4.42e-22;12!UBERON:0004732;1.90e-20;13!UBERON:0000341;2.21e-15;2!UBERON:0002046;6.21e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0002037;3.16e-43;6!UBERON:0002680;3.84e-29;9!UBERON:0001895;3.84e-29;9!UBERON:0004733;4.42e-22;12!UBERON:0002028;4.42e-22;12!UBERON:0004732;1.90e-20;13!UBERON:0000341;2.21e-15;2!UBERON:0002046;6.21e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.16e-43,6;UBERON:0006215,3.16e-43,6;UBERON:0002680,3.84e-29,9;UBERON:0001895,3.84e-29,9;UBERON:0010092,3.84e-29,9;UBERON:0004733,4.42e-22,12;UBERON:0002028,4.42e-22,12;UBERON:0007277,4.42e-22,12;UBERON:0004732,1.90e-20,13;UBERON:0003076,7.82e-18,15;UBERON:0003057,7.82e-18,15;UBERON:0000341,2.37e-15,2;UBERON:0002046,6.77e-07,5;UBERON:0004117,6.77e-07,5;UBERON:0007689,6.77e-07,5;UBERON:0007123,6.77e-07,5;UBERON:0003091,6.77e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.335032530668698,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0.164254312027618,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386682873168488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.241192877250816,6.10326945268333,9.84155413387899,5.31985714116385,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.121499113316049,0,0,0.367182116944987,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.775697738169303,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.443716206147409,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.128458450192919,0,0.159633859057151,0.41023272848151,0,0.276629009856872,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0.413373593002368,0.317079050969534,0,0,0,0,0.127762427639595,0,0.336283722218824,0,0,0.0887023701626388,0,0,0.883606528698812,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0.214429632529969,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75904826792687,0,0,0,0,0,0,0,0.594092800654172,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,1.1903221573187,0,0,0,0.0636471582781649,1.0105859447911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.335032530668698,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0.164254312027618,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386682873168488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.241192877250816,6.10326945268333,9.84155413387899,5.31985714116385,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.121499113316049,0,0,0.367182116944987,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.775697738169303,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.443716206147409,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.128458450192919,0,0.159633859057151,0.41023272848151,0,0.276629009856872,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0.413373593002368,0.317079050969534,0,0,0,0,0.127762427639595,0,0.336283722218824,0,0,0.0887023701626388,0,0,0.883606528698812,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0.214429632529969,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75904826792687,0,0,0,0,0,0,0,0.594092800654172,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,1.1903221573187,0,0,0,0.0636471582781649,1.0105859447911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@SLC35F4 | |short_description=p3@SLC35F4 | ||
}} | }} |
Revision as of 17:18, 17 November 2012
Short description: | p3@SLC35F4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SLC35F4_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -71bp_to_NM_001206920_5end |
EntrezGene: | SLC35F4 |
HGNC: | 19845 |
UniProt: | A4IF30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.16e-43 | 6 |
rhombic lip | 3.16e-43 | 6 |
regional part of metencephalon | 3.84e-29 | 9 |
metencephalon | 3.84e-29 | 9 |
future metencephalon | 3.84e-29 | 9 |
segmental subdivision of hindbrain | 4.42e-22 | 12 |
hindbrain | 4.42e-22 | 12 |
presumptive hindbrain | 4.42e-22 | 12 |
segmental subdivision of nervous system | 1.90e-20 | 13 |
posterior neural tube | 7.82e-18 | 15 |
chordal neural plate | 7.82e-18 | 15 |
throat | 2.37e-15 | 2 |
thyroid gland | 6.77e-07 | 5 |
pharyngeal pouch | 6.77e-07 | 5 |
thyroid diverticulum | 6.77e-07 | 5 |
pharyngeal pouch 2 | 6.77e-07 | 5 |
thyroid primordium | 6.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.11e-08 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.