FFCP PHASE1:Hg19::chr11:89956461..89956473,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26973|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14525|TSSclassifier=S|UniProt=Q9UHD1|association_with_transcript=58bp_to_ENST00000320585,NM_001144073,NM_012124,uc001pdg.2,uc009yvz.2_5end|coexpression_cluster_id=C415|description=CAGE_peak_4_at_CHORDC1_5end|id=chr11:89956461..89956473,-|ontology_enrichment_celltype=CL:0000838!3.20e-07!52;CL:0000542!5.68e-07!53;CL:0000051!5.68e-07!53|ontology_enrichment_celltype_v019=CL:0000791;1.96e-20;18!CL:0000789;1.96e-20;18!CL:0002419;1.96e-20;18!CL:0000624;3.85e-16;6!CL:0000623;4.93e-15;3!CL:0000084;1.27e-14;25!CL:0000222;1.01e-11;1!CL:0002563;1.64e-11;4!CL:0000625;3.68e-09;11|ontology_enrichment_celltype_v019_2=CL:0000791,1.71e-20,18;CL:0000789,1.71e-20,18;CL:0002420,1.71e-20,18;CL:0002419,1.71e-20,18;CL:0000790,1.71e-20,18;CL:0000624,2.74e-16,6;CL:0000623,7.02e-15,3;CL:0000825,7.02e-15,3;CL:0000084,1.15e-14,25;CL:0000827,1.15e-14,25;CL:0000838,6.30e-12,52;CL:0000542,1.10e-11,53;CL:0000051,1.10e-11,53;CL:0002563,1.19e-11,4;CL:0000625,3.95e-09,11|ontology_enrichment_development_v019=CL:0000790;1.96e-20;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4468;9.43e-07;2|ontology_enrichment_disease_v019_2=DOID:4468,9.44e-07,2|ontology_enrichment_uberon=UBERON:0001557!8.41e-07!19|ontology_enrichment_uberon_v019=UBERON:0002346;7.36e-12;4!UBERON:0000923;7.36e-12;4!UBERON:0010316;7.36e-12;4!UBERON:0005291;7.36e-12;4!UBERON:0001242;1.64e-11;4!UBERON:0001262;1.64e-11;4!UBERON:0004786;1.64e-11;4!UBERON:0004808;1.64e-11;4!UBERON:0001277;1.64e-11;4!UBERON:0002050;1.15e-09;5!UBERON:0005423;1.15e-09;5!UBERON:0000485;6.02e-07;7!UBERON:0003929;6.02e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0001242,1.19e-11,4;UBERON:0001262,1.19e-11,4;UBERON:0004786,1.19e-11,4;UBERON:0004808,1.19e-11,4;UBERON:0001277,1.19e-11,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236132343941038,0,1.15148819429164,0.154816123316076,0,0,0,0.46480320348181,0.426507697462265,0,0,0.401088894940283,0,0,0,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0.316462387440884,0,0.212604299965044,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,1.57367816091066,1.57204305099666,1.43921049299656,0,0,0.946895611469467,0,0.111410456885174,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0.889719378972363,0.535081656179426,0,0,0.383220493601921,1.03088233644789,0,0.637130828648193,0,0,0.150575119077773,0,0,0.236777252044017,0,2.01606743224732,1.60464117470104,1.01377082717959,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.110293972732394,0.435758888184812,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0,0,0,1.8448265781467,0,0,0,0,0,0,0,1.44331342025273,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0.224262168690721,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0.144781306667579,0,0,0,2.1673383622212,0.431255149719035,1.02674429023799,0.254094624222463,0,0,0.167516265334349,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142283686696828,0.318852545457645,0.199579371432817,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0.166849141711909,0,0,0,0.270455678475983,0.33307196799782,0,0,0,0,0,0.284136146806413,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0.10893846351899,0,0,0,0.23056390438806,0.179515288819544,0.108647371922008,0,0,0,0,0,0,0.451191321234361,0,0.503464760927528,1.13852239634511,0.158936578980379,0.210998064528027,12.4056934200952,2.40300221437699,0.216388639742091,0,0,0,0.296521128680622,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0.300646838828985,0.518440956986236,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0.0730893170861856,0.0821154570532092,0,0,0,0,0.19871461170299,0,0,0.0801588202515337,0,0,0,0,0,0,0.124252535565433,0,0,0,0.101998217636322,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0.084673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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26973 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14525 | |||
|TSSclassifier=S | |||
|UniProt=Q9UHD1 | |||
|association_with_transcript=58bp_to_ENST00000320585,NM_001144073,NM_012124,uc001pdg.2,uc009yvz.2_5end | |||
|coexpression_cluster_id=C415 | |||
|description=CAGE_peak_4_at_CHORDC1_5end | |||
|id=chr11:89956461..89956473,- | |||
|ontology_enrichment_celltype=CL:0000838!3.20e-07!52;CL:0000542!5.68e-07!53;CL:0000051!5.68e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.96e-20;18!CL:0000789;1.96e-20;18!CL:0002419;1.96e-20;18!CL:0000624;3.85e-16;6!CL:0000623;4.93e-15;3!CL:0000084;1.27e-14;25!CL:0000222;1.01e-11;1!CL:0002563;1.64e-11;4!CL:0000625;3.68e-09;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.71e-20,18;CL:0000789,1.71e-20,18;CL:0002420,1.71e-20,18;CL:0002419,1.71e-20,18;CL:0000790,1.71e-20,18;CL:0000624,2.74e-16,6;CL:0000623,7.02e-15,3;CL:0000825,7.02e-15,3;CL:0000084,1.15e-14,25;CL:0000827,1.15e-14,25;CL:0000838,6.30e-12,52;CL:0000542,1.10e-11,53;CL:0000051,1.10e-11,53;CL:0002563,1.19e-11,4;CL:0000625,3.95e-09,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.96e-20;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;9.43e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,9.44e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001557!8.41e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;7.36e-12;4!UBERON:0000923;7.36e-12;4!UBERON:0010316;7.36e-12;4!UBERON:0005291;7.36e-12;4!UBERON:0001242;1.64e-11;4!UBERON:0001262;1.64e-11;4!UBERON:0004786;1.64e-11;4!UBERON:0004808;1.64e-11;4!UBERON:0001277;1.64e-11;4!UBERON:0002050;1.15e-09;5!UBERON:0005423;1.15e-09;5!UBERON:0000485;6.02e-07;7!UBERON:0003929;6.02e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,1.19e-11,4;UBERON:0001262,1.19e-11,4;UBERON:0004786,1.19e-11,4;UBERON:0004808,1.19e-11,4;UBERON:0001277,1.19e-11,4 | |||
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|short_description=p4@CHORDC1 | |||
}} |
Revision as of 20:08, 10 September 2013
Short description: | p4@CHORDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_CHORDC1_5end |
Coexpression cluster: | C415_neuroectodermal_eye_retina_thyroid_acute_adult_lymphoma |
Association with transcript: | 58bp_to_ENST00000320585, NM_001144073, NM_012124, uc001pdg.2, uc009yvz.2_5end |
EntrezGene: | CHORDC1 |
HGNC: | 14525 |
UniProt: | Q9UHD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.71e-20 | 18 |
alpha-beta T cell | 1.71e-20 | 18 |
immature T cell | 1.71e-20 | 18 |
mature T cell | 1.71e-20 | 18 |
immature alpha-beta T cell | 1.71e-20 | 18 |
CD4-positive, alpha-beta T cell | 2.74e-16 | 6 |
natural killer cell | 7.02e-15 | 3 |
pro-NK cell | 7.02e-15 | 3 |
T cell | 1.15e-14 | 25 |
pro-T cell | 1.15e-14 | 25 |
lymphoid lineage restricted progenitor cell | 6.30e-12 | 52 |
lymphocyte | 1.10e-11 | 53 |
common lymphoid progenitor | 1.10e-11 | 53 |
intestinal epithelial cell | 1.19e-11 | 4 |
CD8-positive, alpha-beta T cell | 3.95e-09 | 11 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 1.19e-11 | 4 |
wall of intestine | 1.19e-11 | 4 |
gastrointestinal system mucosa | 1.19e-11 | 4 |
gastrointestinal system epithelium | 1.19e-11 | 4 |
intestinal epithelium | 1.19e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 9.44e-07 | 2 |
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