FFCP PHASE1:Hg19::chr12:28176523..28176533,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:28176523..28176533,-|id=chr12:28176523..28176533,-|ontology_enrichment_celltype=CL:0002368!1.62e-15!13;CL:0002076!1.53e-11!43;CL:0000068!3.89e-11!3;CL:0000069!3.89e-11!3;CL:0000307!3.89e-11!3;CL:0000377!3.89e-11!3;CL:0000223!3.65e-10!59;CL:0002202!1.74e-09!9;CL:0002632!1.74e-09!9;CL:0002589!8.26e-07!2|ontology_enrichment_celltype_v019=CL:0000307;5.50e-34;3!CL:0002368;6.20e-31;13!CL:0002202;2.00e-25;9!CL:0002632;2.00e-25;9!CL:0002593;1.14e-13;2!CL:0002328;1.47e-09;3!CL:1000306;1.75e-07;4!CL:0002547;1.75e-07;4|ontology_enrichment_celltype_v019_2=CL:0000068,6.51e-34,3;CL:0000069,6.51e-34,3;CL:0000307,6.51e-34,3;CL:0000377,6.51e-34,3;CL:0002368,7.24e-31,13;CL:0002202,2.27e-25,9;CL:0002632,2.27e-25,9;CL:0002593,1.55e-13,2;CL:0002076,6.58e-10,42;CL:0002328,1.54e-09,3;CL:1000306,1.49e-07,4;CL:0002547,1.49e-07,4;CL:0000223,2.81e-07,58|ontology_enrichment_development_v019=CL:0000377;5.50e-34;3!CL:0000223;5.51e-07;58|ontology_enrichment_disease=DOID:2394!4.40e-08!14;DOID:1749!2.68e-07!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003729!3.53e-10!5;UBERON:0003343!1.64e-07!4;UBERON:0004785!1.64e-07!4;UBERON:0001529!8.26e-07!2;UBERON:0007204!8.26e-07!2|ontology_enrichment_uberon_v019=UBERON:0007196;1.41e-15;15!UBERON:0001558;1.41e-15;15!UBERON:0003126;3.29e-15;7!UBERON:0001005;3.29e-15;7!UBERON:0002456;1.14e-13;2!UBERON:0004815;1.47e-09;3!UBERON:0002031;1.47e-09;3!UBERON:0000065;1.23e-08;44!UBERON:0004797;1.75e-07;4!UBERON:0000415;1.75e-07;4!UBERON:0007240;1.75e-07;4!UBERON:0005742;1.75e-07;4!UBERON:0005734;1.75e-07;4!UBERON:0004664;1.75e-07;4!UBERON:0004663;1.75e-07;4!UBERON:0005178;2.41e-07;34!UBERON:0002224;2.41e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0007196,1.52e-15,15;UBERON:0001558,1.52e-15,15;UBERON:0003126,3.53e-15,7;UBERON:0001005,3.53e-15,7;UBERON:0002456,1.55e-13,2;UBERON:0004815,1.54e-09,3;UBERON:0002031,1.54e-09,3;UBERON:0000915,4.99e-08,52;UBERON:0000065,8.61e-08,54;UBERON:0000415,1.49e-07,4;UBERON:0007240,1.49e-07,4;UBERON:0005742,1.49e-07,4;UBERON:0005734,1.49e-07,4;UBERON:0004664,1.49e-07,4;UBERON:0004663,1.49e-07,4;UBERON:0005178,3.15e-07,34;UBERON:0002224,3.15e-07,34;UBERON:0005181,4.88e-07,35|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58891016975863,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0.213557388818567,0,0,0,0,0,0.337552664482532,0,0.252433774244115,0,0,0.710019185033229,0,0,0,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,1.1240175325762,0.100528972411631,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,2.16941611240793,0,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,2.68120910214315,1.08890984861323,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0,0,0,0,0,0,0,0,0,0,0.400794101257669,0,0,0,0,0,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0,0,0,0.298509605773748,0,0,0,0.50313580350515,0,0,0.151230923763239,0.15543720058278,0,0,0,0.931577741257556,0,0.53168342911599,0,0.300515217994437,0,1.22061219961398,0.363697318405119,0.429642228169954,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.353909170043221,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17148800943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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:28176523..28176533,- | |||
|id=chr12:28176523..28176533,- | |||
|ontology_enrichment_celltype=CL:0002368!1.62e-15!13;CL:0002076!1.53e-11!43;CL:0000068!3.89e-11!3;CL:0000069!3.89e-11!3;CL:0000307!3.89e-11!3;CL:0000377!3.89e-11!3;CL:0000223!3.65e-10!59;CL:0002202!1.74e-09!9;CL:0002632!1.74e-09!9;CL:0002589!8.26e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000307;5.50e-34;3!CL:0002368;6.20e-31;13!CL:0002202;2.00e-25;9!CL:0002632;2.00e-25;9!CL:0002593;1.14e-13;2!CL:0002328;1.47e-09;3!CL:1000306;1.75e-07;4!CL:0002547;1.75e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,6.51e-34,3;CL:0000069,6.51e-34,3;CL:0000307,6.51e-34,3;CL:0000377,6.51e-34,3;CL:0002368,7.24e-31,13;CL:0002202,2.27e-25,9;CL:0002632,2.27e-25,9;CL:0002593,1.55e-13,2;CL:0002076,6.58e-10,42;CL:0002328,1.54e-09,3;CL:1000306,1.49e-07,4;CL:0002547,1.49e-07,4;CL:0000223,2.81e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000377;5.50e-34;3!CL:0000223;5.51e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!4.40e-08!14;DOID:1749!2.68e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003729!3.53e-10!5;UBERON:0003343!1.64e-07!4;UBERON:0004785!1.64e-07!4;UBERON:0001529!8.26e-07!2;UBERON:0007204!8.26e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;1.41e-15;15!UBERON:0001558;1.41e-15;15!UBERON:0003126;3.29e-15;7!UBERON:0001005;3.29e-15;7!UBERON:0002456;1.14e-13;2!UBERON:0004815;1.47e-09;3!UBERON:0002031;1.47e-09;3!UBERON:0000065;1.23e-08;44!UBERON:0004797;1.75e-07;4!UBERON:0000415;1.75e-07;4!UBERON:0007240;1.75e-07;4!UBERON:0005742;1.75e-07;4!UBERON:0005734;1.75e-07;4!UBERON:0004664;1.75e-07;4!UBERON:0004663;1.75e-07;4!UBERON:0005178;2.41e-07;34!UBERON:0002224;2.41e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007196,1.52e-15,15;UBERON:0001558,1.52e-15,15;UBERON:0003126,3.53e-15,7;UBERON:0001005,3.53e-15,7;UBERON:0002456,1.55e-13,2;UBERON:0004815,1.54e-09,3;UBERON:0002031,1.54e-09,3;UBERON:0000915,4.99e-08,52;UBERON:0000065,8.61e-08,54;UBERON:0000415,1.49e-07,4;UBERON:0007240,1.49e-07,4;UBERON:0005742,1.49e-07,4;UBERON:0005734,1.49e-07,4;UBERON:0004664,1.49e-07,4;UBERON:0004663,1.49e-07,4;UBERON:0005178,3.15e-07,34;UBERON:0002224,3.15e-07,34;UBERON:0005181,4.88e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58891016975863,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0.213557388818567,0,0,0,0,0,0.337552664482532,0,0.252433774244115,0,0,0.710019185033229,0,0,0,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,1.1240175325762,0.100528972411631,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,2.16941611240793,0,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,2.68120910214315,1.08890984861323,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0,0,0,0,0,0,0,0,0,0,0.400794101257669,0,0,0,0,0,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0,0,0,0.298509605773748,0,0,0,0.50313580350515,0,0,0.151230923763239,0.15543720058278,0,0,0,0.931577741257556,0,0.53168342911599,0,0.300515217994437,0,1.22061219961398,0.363697318405119,0.429642228169954,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.353909170043221,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0.236387681767936,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:28176523..28176533,- | |||
}} |
Revision as of 22:21, 10 September 2013
Short description: | p@chr12:28176523..28176533, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:28176523..28176533, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 6.51e-34 | 3 |
branched duct epithelial cell | 6.51e-34 | 3 |
tracheal epithelial cell | 6.51e-34 | 3 |
tracheoblast | 6.51e-34 | 3 |
respiratory epithelial cell | 7.24e-31 | 13 |
epithelial cell of tracheobronchial tree | 2.27e-25 | 9 |
epithelial cell of lower respiratory tract | 2.27e-25 | 9 |
smooth muscle cell of the internal thoracic artery | 1.55e-13 | 2 |
endo-epithelial cell | 6.58e-10 | 42 |
bronchial epithelial cell | 1.54e-09 | 3 |
fibroblast of tunica adventitia of artery | 1.49e-07 | 4 |
fibroblast of the aortic adventitia | 1.49e-07 | 4 |
endodermal cell | 2.81e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
tracheobronchial tree | 1.52e-15 | 15 |
lower respiratory tract | 1.52e-15 | 15 |
trachea | 3.53e-15 | 7 |
respiratory airway | 3.53e-15 | 7 |
internal thoracic artery | 1.55e-13 | 2 |
lower respiratory tract epithelium | 1.54e-09 | 3 |
epithelium of bronchus | 1.54e-09 | 3 |
thoracic segment of trunk | 4.99e-08 | 52 |
respiratory tract | 8.61e-08 | 54 |
artery wall | 1.49e-07 | 4 |
tunica adventitia of artery | 1.49e-07 | 4 |
adventitia | 1.49e-07 | 4 |
tunica adventitia of blood vessel | 1.49e-07 | 4 |
aorta tunica adventitia | 1.49e-07 | 4 |
aorta wall | 1.49e-07 | 4 |
thoracic cavity element | 3.15e-07 | 34 |
thoracic cavity | 3.15e-07 | 34 |
thoracic segment organ | 4.88e-07 | 35 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.