FFCP PHASE1:Hg19::chr15:54134723..54134734,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C311|description=CAGE_peak_at_chr15:54134723..54134734,+|id=chr15:54134723..54134734,+|ontology_enrichment_celltype=CL:0002322!3.16e-30!5;CL:0002563!8.04e-18!4;CL:0000148!1.74e-15!10;CL:0000541!1.74e-15!10;CL:0000147!3.02e-11!14;CL:0002253!9.46e-10!2;CL:0000710!4.80e-08!20;CL:0002231!6.88e-07!3|ontology_enrichment_celltype_v019=CL:0002563;2.22e-40;4!CL:0002253;4.66e-21;2!CL:0002231;1.83e-14;3!CL:0002076;9.60e-10;42!CL:0002322;3.49e-09;5!CL:0002251;5.70e-09;20|ontology_enrichment_celltype_v019_2=CL:0002563,2.22e-40,4;CL:0002253,4.66e-21,2;CL:0002231,1.83e-14,3;CL:0002076,2.66e-09,42;CL:0002322,3.49e-09,5;CL:0002251,5.70e-09,20;CL:0000223,6.14e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3119;2.12e-12;14|ontology_enrichment_disease_v019_2=DOID:3119,2.12e-12,14|ontology_enrichment_uberon=UBERON:0001052!7.39e-18!4;UBERON:0001242!8.04e-18!4;UBERON:0001262!8.04e-18!4;UBERON:0004786!8.04e-18!4;UBERON:0004808!8.04e-18!4;UBERON:0001277!8.04e-18!4;UBERON:0004907!1.72e-14!5;UBERON:0003350!1.84e-14!5;UBERON:0001046!1.35e-08!19;UBERON:0000485!1.90e-08!9;UBERON:0000059!4.43e-07!11|ontology_enrichment_uberon_v019=UBERON:0001052;1.81e-40;4!UBERON:0001242;2.22e-40;4!UBERON:0001262;2.22e-40;4!UBERON:0004786;2.22e-40;4!UBERON:0004808;2.22e-40;4!UBERON:0001277;2.22e-40;4!UBERON:0004907;1.23e-32;5!UBERON:0000485;1.28e-23;7!UBERON:0003929;1.28e-23;7!UBERON:0003350;8.12e-21;8!UBERON:0000160;1.20e-20;17!UBERON:0005409;2.31e-16;22!UBERON:0000059;1.74e-15;11!UBERON:0004921;3.61e-10;33!UBERON:0000344;5.70e-09;20|ontology_enrichment_uberon_v019_2=UBERON:0001052,1.81e-40,4;UBERON:0001242,2.22e-40,4;UBERON:0001262,2.22e-40,4;UBERON:0004786,2.22e-40,4;UBERON:0004808,2.22e-40,4;UBERON:0001277,2.22e-40,4;UBERON:0004907,1.23e-32,5;UBERON:0003350,8.12e-21,8;UBERON:0000160,1.20e-20,17;UBERON:0001046,1.48e-19,19;UBERON:0000485,1.24e-18,9;UBERON:0000059,1.74e-15,11;UBERON:0005409,1.41e-14,25;UBERON:0000344,5.70e-09,20;UBERON:0003929,2.12e-07,54|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0.207322110030741,1.51392510525377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8816010637167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.42703706814653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.873658000451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.549665801203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr15:54134723..54134734,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C311 | |||
|description=CAGE_peak_at_chr15:54134723..54134734,+ | |||
|id=chr15:54134723..54134734,+ | |||
|ontology_enrichment_celltype=CL:0002322!3.16e-30!5;CL:0002563!8.04e-18!4;CL:0000148!1.74e-15!10;CL:0000541!1.74e-15!10;CL:0000147!3.02e-11!14;CL:0002253!9.46e-10!2;CL:0000710!4.80e-08!20;CL:0002231!6.88e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002563;2.22e-40;4!CL:0002253;4.66e-21;2!CL:0002231;1.83e-14;3!CL:0002076;9.60e-10;42!CL:0002322;3.49e-09;5!CL:0002251;5.70e-09;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.22e-40,4;CL:0002253,4.66e-21,2;CL:0002231,1.83e-14,3;CL:0002076,2.66e-09,42;CL:0002322,3.49e-09,5;CL:0002251,5.70e-09,20;CL:0000223,6.14e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3119;2.12e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,2.12e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0001052!7.39e-18!4;UBERON:0001242!8.04e-18!4;UBERON:0001262!8.04e-18!4;UBERON:0004786!8.04e-18!4;UBERON:0004808!8.04e-18!4;UBERON:0001277!8.04e-18!4;UBERON:0004907!1.72e-14!5;UBERON:0003350!1.84e-14!5;UBERON:0001046!1.35e-08!19;UBERON:0000485!1.90e-08!9;UBERON:0000059!4.43e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0001052;1.81e-40;4!UBERON:0001242;2.22e-40;4!UBERON:0001262;2.22e-40;4!UBERON:0004786;2.22e-40;4!UBERON:0004808;2.22e-40;4!UBERON:0001277;2.22e-40;4!UBERON:0004907;1.23e-32;5!UBERON:0000485;1.28e-23;7!UBERON:0003929;1.28e-23;7!UBERON:0003350;8.12e-21;8!UBERON:0000160;1.20e-20;17!UBERON:0005409;2.31e-16;22!UBERON:0000059;1.74e-15;11!UBERON:0004921;3.61e-10;33!UBERON:0000344;5.70e-09;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,1.81e-40,4;UBERON:0001242,2.22e-40,4;UBERON:0001262,2.22e-40,4;UBERON:0004786,2.22e-40,4;UBERON:0004808,2.22e-40,4;UBERON:0001277,2.22e-40,4;UBERON:0004907,1.23e-32,5;UBERON:0003350,8.12e-21,8;UBERON:0000160,1.20e-20,17;UBERON:0001046,1.48e-19,19;UBERON:0000485,1.24e-18,9;UBERON:0000059,1.74e-15,11;UBERON:0005409,1.41e-14,25;UBERON:0000344,5.70e-09,20;UBERON:0003929,2.12e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0.207322110030741,1.51392510525377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8816010637167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.42703706814653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.873658000451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.549665801203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr15:54134723..54134734,+ | |||
}} |
Revision as of 07:29, 11 September 2013
Short description: | p@chr15:54134723..54134734, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:54134723..54134734, + |
Coexpression cluster: | C311_rectal_heart_choriocarcinoma_placenta_chorionic_lung_ductal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.22e-40 | 4 |
epithelial cell of large intestine | 4.66e-21 | 2 |
epithelial cell of prostate | 1.83e-14 | 3 |
endo-epithelial cell | 2.66e-09 | 42 |
embryonic stem cell | 3.49e-09 | 5 |
epithelial cell of alimentary canal | 5.70e-09 | 20 |
endodermal cell | 6.14e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
rectum | 1.81e-40 | 4 |
intestinal mucosa | 2.22e-40 | 4 |
wall of intestine | 2.22e-40 | 4 |
gastrointestinal system mucosa | 2.22e-40 | 4 |
gastrointestinal system epithelium | 2.22e-40 | 4 |
intestinal epithelium | 2.22e-40 | 4 |
lower digestive tract | 1.23e-32 | 5 |
epithelium of mucosa | 8.12e-21 | 8 |
intestine | 1.20e-20 | 17 |
hindgut | 1.48e-19 | 19 |
simple columnar epithelium | 1.24e-18 | 9 |
large intestine | 1.74e-15 | 11 |
gastrointestinal system | 1.41e-14 | 25 |
mucosa | 5.70e-09 | 20 |
gut epithelium | 2.12e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 2.12e-12 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.