FFCP PHASE1:Hg19::chr1:1149506..1149515,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7293|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11918|TSSclassifier=S|UniProt=P43489|association_with_transcript=0bp_to_ENST00000379236,uc001ade.2,uc001adf.2_5end|coexpression_cluster_id=C205|description=CAGE_peak_2_at_TNFRSF4_5end|id=chr1:1149506..1149515,-|ontology_enrichment_celltype=CL:0000738!8.46e-26!140;CL:0002087!5.40e-25!119;CL:0002031!4.39e-23!124;CL:0000988!1.61e-22!182;CL:0000037!1.38e-20!172;CL:0000566!1.38e-20!172;CL:0002032!1.88e-19!165;CL:0000837!1.88e-19!165;CL:0000542!8.58e-15!53;CL:0000051!8.58e-15!53;CL:0000838!6.77e-14!52;CL:0000084!1.11e-13!25;CL:0000827!1.11e-13!25;CL:0000791!9.38e-11!18;CL:0000789!9.38e-11!18;CL:0002420!9.38e-11!18;CL:0002419!9.38e-11!18;CL:0000790!9.38e-11!18;CL:0000557!2.74e-10!71;CL:0000080!5.58e-10!6;CL:0000766!6.42e-10!76;CL:0000839!1.40e-09!70;CL:0002009!2.58e-09!65;CL:0002194!7.39e-09!63;CL:0000576!7.39e-09!63;CL:0000040!7.39e-09!63;CL:0000559!7.39e-09!63;CL:0000624!1.32e-07!6;CL:0002057!1.51e-07!42;CL:0000840!2.64e-07!5;CL:0001029!2.64e-07!5;CL:0000763!2.71e-07!112;CL:0000049!2.71e-07!112;CL:0000860!9.59e-07!45|ontology_enrichment_celltype_v019=CL:0000084;3.36e-17;25!CL:0000624;2.50e-15;6!CL:0000840;6.21e-09;5!CL:0000791;1.16e-07;18!CL:0000789;1.16e-07;18!CL:0002419;1.16e-07;18|ontology_enrichment_celltype_v019_2=CL:0000084,3.51e-17,25;CL:0000827,3.51e-17,25;CL:0000624,1.62e-15,6;CL:0002087,5.57e-12,115;CL:0002031,2.49e-11,120;CL:0000988,6.38e-11,177;CL:0000738,1.42e-09,136;CL:0000840,6.13e-09,5;CL:0001029,6.13e-09,5;CL:0002032,1.29e-08,161;CL:0000837,1.29e-08,161;CL:0000037,4.22e-08,168;CL:0000791,1.08e-07,18;CL:0000789,1.08e-07,18;CL:0002420,1.08e-07,18;CL:0002419,1.08e-07,18;CL:0000790,1.08e-07,18;CL:0000838,1.70e-07,52;CL:0000542,2.51e-07,53;CL:0000051,2.51e-07,53|ontology_enrichment_development_v019=CL:0000790;1.16e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060060;1.45e-07;1!DOID:0060061;1.45e-07;1!DOID:8691;1.45e-07;1|ontology_enrichment_disease_v019_2=DOID:0060060,1.46e-07,1;DOID:0060061,1.46e-07,1;DOID:8691,1.46e-07,1|ontology_enrichment_uberon=UBERON:0002390!2.81e-15!102;UBERON:0003061!2.81e-15!102;UBERON:0002193!1.43e-14!112;UBERON:0002371!2.74e-08!80;UBERON:0002405!1.81e-07!115;UBERON:0001474!3.26e-07!86|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687720651731561,0.57470412614962,0.708397031823113,0.393364276848904,0,0.464448369948228,0,0,0,0,0,0,1.10799081706375,0,0.434021741431704,0,0,0.77272670290256,0,0,0,0,0.411167888021826,0.309706370895104,0,0.512321413058201,0.709446689665756,0.344745680736619,0.645484683583826,0,0.188242339542605,0.272906150057846,0.449446968890169,0,0,0.639337125799041,0,0,0,0.580418477257168,1.70215567407342,2.4912889959823,0,0,0.217188844705117,0,1.47311054395026,1.58231193720442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,1.96709770113833,1.57204305099666,1.85041349099558,2.34061093546949,0,0,0,4.34500781852177,3.24066498222321,1.99380505125259,1.62482318259009,7.04502258491213,6.89314542067355,5.59088875652499,7.46145048021791,3.76744011455568,0.14828656316206,0,0,1.81294948316106,0.766440987203842,2.40539211837841,1.51811815211702,0.637130828648193,1.30216690771284,0.950452044448374,0.602300476311091,0,0,0.473554504088034,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,1.9472843619281,1.56716763569341,1.46253756570752,0.715471872916026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,1.8720341211139,0.445893486866185,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.646882724578552,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0.79312517629427,0,0,0,0.557409525377156,0,2.06311345710401,1.4348364545594,3.19326994292507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941881538370149,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,6.52346483097368,11.3678823830783,11.7996802941165,0,0.802577647298789,0,0,0,0,0,0,0,0,0.150323419414493,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7293 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11918 | |||
|TSSclassifier=S | |||
|UniProt=P43489 | |||
|association_with_transcript=0bp_to_ENST00000379236,uc001ade.2,uc001adf.2_5end | |||
|coexpression_cluster_id=C205 | |||
|description=CAGE_peak_2_at_TNFRSF4_5end | |||
|id=chr1:1149506..1149515,- | |||
|ontology_enrichment_celltype=CL:0000738!8.46e-26!140;CL:0002087!5.40e-25!119;CL:0002031!4.39e-23!124;CL:0000988!1.61e-22!182;CL:0000037!1.38e-20!172;CL:0000566!1.38e-20!172;CL:0002032!1.88e-19!165;CL:0000837!1.88e-19!165;CL:0000542!8.58e-15!53;CL:0000051!8.58e-15!53;CL:0000838!6.77e-14!52;CL:0000084!1.11e-13!25;CL:0000827!1.11e-13!25;CL:0000791!9.38e-11!18;CL:0000789!9.38e-11!18;CL:0002420!9.38e-11!18;CL:0002419!9.38e-11!18;CL:0000790!9.38e-11!18;CL:0000557!2.74e-10!71;CL:0000080!5.58e-10!6;CL:0000766!6.42e-10!76;CL:0000839!1.40e-09!70;CL:0002009!2.58e-09!65;CL:0002194!7.39e-09!63;CL:0000576!7.39e-09!63;CL:0000040!7.39e-09!63;CL:0000559!7.39e-09!63;CL:0000624!1.32e-07!6;CL:0002057!1.51e-07!42;CL:0000840!2.64e-07!5;CL:0001029!2.64e-07!5;CL:0000763!2.71e-07!112;CL:0000049!2.71e-07!112;CL:0000860!9.59e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.36e-17;25!CL:0000624;2.50e-15;6!CL:0000840;6.21e-09;5!CL:0000791;1.16e-07;18!CL:0000789;1.16e-07;18!CL:0002419;1.16e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.51e-17,25;CL:0000827,3.51e-17,25;CL:0000624,1.62e-15,6;CL:0002087,5.57e-12,115;CL:0002031,2.49e-11,120;CL:0000988,6.38e-11,177;CL:0000738,1.42e-09,136;CL:0000840,6.13e-09,5;CL:0001029,6.13e-09,5;CL:0002032,1.29e-08,161;CL:0000837,1.29e-08,161;CL:0000037,4.22e-08,168;CL:0000791,1.08e-07,18;CL:0000789,1.08e-07,18;CL:0002420,1.08e-07,18;CL:0002419,1.08e-07,18;CL:0000790,1.08e-07,18;CL:0000838,1.70e-07,52;CL:0000542,2.51e-07,53;CL:0000051,2.51e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;1.16e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.45e-07;1!DOID:0060061;1.45e-07;1!DOID:8691;1.45e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.46e-07,1;DOID:0060061,1.46e-07,1;DOID:8691,1.46e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.81e-15!102;UBERON:0003061!2.81e-15!102;UBERON:0002193!1.43e-14!112;UBERON:0002371!2.74e-08!80;UBERON:0002405!1.81e-07!115;UBERON:0001474!3.26e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687720651731561,0.57470412614962,0.708397031823113,0.393364276848904,0,0.464448369948228,0,0,0,0,0,0,1.10799081706375,0,0.434021741431704,0,0,0.77272670290256,0,0,0,0,0.411167888021826,0.309706370895104,0,0.512321413058201,0.709446689665756,0.344745680736619,0.645484683583826,0,0.188242339542605,0.272906150057846,0.449446968890169,0,0,0.639337125799041,0,0,0,0.580418477257168,1.70215567407342,2.4912889959823,0,0,0.217188844705117,0,1.47311054395026,1.58231193720442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,1.96709770113833,1.57204305099666,1.85041349099558,2.34061093546949,0,0,0,4.34500781852177,3.24066498222321,1.99380505125259,1.62482318259009,7.04502258491213,6.89314542067355,5.59088875652499,7.46145048021791,3.76744011455568,0.14828656316206,0,0,1.81294948316106,0.766440987203842,2.40539211837841,1.51811815211702,0.637130828648193,1.30216690771284,0.950452044448374,0.602300476311091,0,0,0.473554504088034,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,1.9472843619281,1.56716763569341,1.46253756570752,0.715471872916026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,1.8720341211139,0.445893486866185,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.646882724578552,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0.79312517629427,0,0,0,0.557409525377156,0,2.06311345710401,1.4348364545594,3.19326994292507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941881538370149,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,6.52346483097368,11.3678823830783,11.7996802941165,0,0.802577647298789,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.7062710335625,0,0.229160424011684,0.717873024576814,0,0,0.446342914883745,0.268733889946905,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0.0607495566580247,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533937062838473,0.314408610199332,0,0,0,0.121792598380896,0,0,0.7520696820681,0.612691153526923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,31.7979959409339,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0.691403925334676,0,0.0679697329768317,0.131545547125698,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410651227424988,0,0,0,0,0,0,0,0,0.154348316215889,0.437119121007915,0,0,0,0,0,0,0,0.375935671919414,0.966868319603658,0,0,0,0,0,0.458729283404541,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0.516711278688049,0.620747142958579,0,0.0636471582781649,0.202117188958219,0,0.342233301085281,0.5388164241167,0.358611026963382,0.332660356546013,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p2@TNFRSF4 | |||
}} |
Revision as of 23:39, 11 September 2013
Short description: | p2@TNFRSF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TNFRSF4_5end |
Coexpression cluster: | C205_mycosis_cord_hairy_xeroderma_CD4_B_b |
Association with transcript: | 0bp_to_ENST00000379236, uc001ade.2, uc001adf.2_5end |
EntrezGene: | TNFRSF4 |
HGNC: | 11918 |
UniProt: | P43489 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.51e-17 | 25 |
pro-T cell | 3.51e-17 | 25 |
CD4-positive, alpha-beta T cell | 1.62e-15 | 6 |
nongranular leukocyte | 5.57e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 2.49e-11 | 120 |
hematopoietic cell | 6.38e-11 | 177 |
leukocyte | 1.42e-09 | 136 |
immature conventional dendritic cell | 6.13e-09 | 5 |
common dendritic progenitor | 6.13e-09 | 5 |
hematopoietic oligopotent progenitor cell | 1.29e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.29e-08 | 161 |
hematopoietic stem cell | 4.22e-08 | 168 |
mature alpha-beta T cell | 1.08e-07 | 18 |
alpha-beta T cell | 1.08e-07 | 18 |
immature T cell | 1.08e-07 | 18 |
mature T cell | 1.08e-07 | 18 |
immature alpha-beta T cell | 1.08e-07 | 18 |
lymphoid lineage restricted progenitor cell | 1.70e-07 | 52 |
lymphocyte | 2.51e-07 | 53 |
common lymphoid progenitor | 2.51e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.46e-07 | 1 |
cutaneous T cell lymphoma | 1.46e-07 | 1 |
mycosis fungoides | 1.46e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.