FFCP PHASE1:Hg19::chr1:117753540..117753556,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79679|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28873|TSSclassifier=S|UniProt=Q7Z7D3|association_with_transcript=0bp_to_ENST00000328189,ENST00000369458,ENST00000463461,uc001ehb.2,uc001ehc.2,uc009whf.1_5end|description=CAGE_peak_1_at_VTCN1_5end|id=chr1:117753540..117753556,-|ontology_enrichment_celltype=CL:0000066!2.85e-12!254;CL:0002076!1.49e-07!43|ontology_enrichment_celltype_v019=CL:0000349;2.12e-13;19!CL:0002577;1.04e-08;3!CL:0002541;6.75e-07;3|ontology_enrichment_celltype_v019_2=CL:0000349,2.64e-13,19;CL:0002577,1.02e-08,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!3.91e-14!106;DOID:299!3.21e-10!25;DOID:0050687!5.42e-10!143;DOID:1749!1.16e-07!14;DOID:5093!5.97e-07!4;DOID:1612!5.97e-07!4|ontology_enrichment_disease_v019=DOID:5093;9.58e-10;4!DOID:1612;9.58e-10;4!DOID:299;2.47e-09;25|ontology_enrichment_disease_v019_2=DOID:5093,8.75e-10,4;DOID:1612,8.75e-10,4;DOID:299,2.27e-09,25|ontology_enrichment_uberon=UBERON:0005631!5.49e-15!14;UBERON:0000158!5.49e-15!14;UBERON:0000077!1.26e-12!130;UBERON:0004119!1.30e-12!169;UBERON:0000925!1.30e-12!169;UBERON:0006595!1.30e-12!169;UBERON:0003124!1.02e-10!7;UBERON:0004921!1.86e-09!129;UBERON:0004185!1.86e-09!129;UBERON:0001007!2.32e-09!155;UBERON:0001555!2.32e-09!155;UBERON:0007026!2.32e-09!155;UBERON:0000161!7.75e-09!35;UBERON:0000478!1.19e-08!24;UBERON:0000464!1.74e-08!104;UBERON:0005156!2.99e-08!59;UBERON:0000990!2.99e-08!59;UBERON:0004175!4.02e-08!25;UBERON:0000466!4.11e-08!126;UBERON:0003133!9.27e-08!48;UBERON:0001987!1.96e-07!4;UBERON:0004340!1.96e-07!4;UBERON:0001008!2.76e-07!45;UBERON:0002294!3.87e-07!7;UBERON:0001173!3.87e-07!7;UBERON:0004912!3.87e-07!7;UBERON:0002553!5.42e-07!70;UBERON:0001041!7.47e-07!98;UBERON:0005795!8.48e-07!22;UBERON:0000166!9.44e-07!21|ontology_enrichment_uberon_v019=UBERON:0005631;3.32e-14;10!UBERON:0000158;3.32e-14;10!UBERON:0000478;5.08e-14;24!UBERON:0001987;1.65e-10;4!UBERON:0000305;3.95e-09;7!UBERON:0003124;6.75e-07;3!UBERON:0000920;6.75e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.61e-22,14;UBERON:0000158,1.61e-22,14;UBERON:0003124,1.63e-15,7;UBERON:0000478,6.35e-14,24;UBERON:0004175,2.17e-11,25;UBERON:0005795,5.79e-11,22;UBERON:0001987,1.61e-10,4;UBERON:0004340,1.61e-10,4;UBERON:0000995,1.52e-09,21;UBERON:0000305,3.92e-09,7;UBERON:0003975,5.21e-09,22;UBERON:0003133,6.57e-09,48;UBERON:0005156,2.09e-08,59;UBERON:0000990,2.09e-08,59;UBERON:0004871,6.34e-08,8;UBERON:0006554,1.78e-07,47;UBERON:0001008,3.00e-07,48;UBERON:0003100,5.38e-07,41|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,22.2810199572776,67.5243464264841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79929982279836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0,0,0,5.95954793514592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,1.39432731443422,4.5610864206763,0.504641701751257,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33678033231916,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,2.37061319387782,2.57545848628462,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0.207328115540772,0.144119953416961,1.64115163454294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0694614258501,0,0.184369168541703,0,0,0,0,0,0,8.48757200049526,228.016552129381,55.6398139726612,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.00253235151642,0.644566922551274,0,0,0,6.76799419361118,8.08661039596355,0,0,1.26661954671451,0,0,0,0,0,0,1.78413391131527,0.831076008928724,0.223874754722178,0,0,0,0,0,1.33953315142039,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,1.31535265576129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31801321087491,0.86101074534246,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.01363417949149,255.983554877734,7.6790175524808,0,0,0,0,0,2.98871982376605,0,0,0.102268682502155,0,0,0.449341755736634,3.58042349351218,0,1.38100767891707,0,0,0,0,0,7.812832832557,22.7395999990109,7.24999575434793,0.227586896570999,3.30529745380596,0.472775363535873,0,0,0,0,0,0,0,0,0,0,1.67308493134324,6.23297093880756,0,0.23056390438806,16.5154065713981,64.2105968059068,3.19001159731919,1.00757352742049,1.06606955203727,0,0,0,0,0,0,0,0,0,199.796957186797,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,37.5676068349612,0,7.10251925128903,8.46935012340647,0,0,0,0,0,0,0,0,4.26914319044689,0,21.0007283385508,0.783939179315021,0,33.8969736389538,0,0,0,0,0.0969890164884194,0,6.10148000107438,0,0,0,31.8748753857729,5.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79679 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28873 | |||
|TSSclassifier=S | |||
|UniProt=Q7Z7D3 | |||
|association_with_transcript=0bp_to_ENST00000328189,ENST00000369458,ENST00000463461,uc001ehb.2,uc001ehc.2,uc009whf.1_5end | |||
|description=CAGE_peak_1_at_VTCN1_5end | |||
|id=chr1:117753540..117753556,- | |||
|ontology_enrichment_celltype=CL:0000066!2.85e-12!254;CL:0002076!1.49e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.12e-13;19!CL:0002577;1.04e-08;3!CL:0002541;6.75e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.64e-13,19;CL:0002577,1.02e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.91e-14!106;DOID:299!3.21e-10!25;DOID:0050687!5.42e-10!143;DOID:1749!1.16e-07!14;DOID:5093!5.97e-07!4;DOID:1612!5.97e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;9.58e-10;4!DOID:1612;9.58e-10;4!DOID:299;2.47e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,8.75e-10,4;DOID:1612,8.75e-10,4;DOID:299,2.27e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.49e-15!14;UBERON:0000158!5.49e-15!14;UBERON:0000077!1.26e-12!130;UBERON:0004119!1.30e-12!169;UBERON:0000925!1.30e-12!169;UBERON:0006595!1.30e-12!169;UBERON:0003124!1.02e-10!7;UBERON:0004921!1.86e-09!129;UBERON:0004185!1.86e-09!129;UBERON:0001007!2.32e-09!155;UBERON:0001555!2.32e-09!155;UBERON:0007026!2.32e-09!155;UBERON:0000161!7.75e-09!35;UBERON:0000478!1.19e-08!24;UBERON:0000464!1.74e-08!104;UBERON:0005156!2.99e-08!59;UBERON:0000990!2.99e-08!59;UBERON:0004175!4.02e-08!25;UBERON:0000466!4.11e-08!126;UBERON:0003133!9.27e-08!48;UBERON:0001987!1.96e-07!4;UBERON:0004340!1.96e-07!4;UBERON:0001008!2.76e-07!45;UBERON:0002294!3.87e-07!7;UBERON:0001173!3.87e-07!7;UBERON:0004912!3.87e-07!7;UBERON:0002553!5.42e-07!70;UBERON:0001041!7.47e-07!98;UBERON:0005795!8.48e-07!22;UBERON:0000166!9.44e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.32e-14;10!UBERON:0000158;3.32e-14;10!UBERON:0000478;5.08e-14;24!UBERON:0001987;1.65e-10;4!UBERON:0000305;3.95e-09;7!UBERON:0003124;6.75e-07;3!UBERON:0000920;6.75e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.61e-22,14;UBERON:0000158,1.61e-22,14;UBERON:0003124,1.63e-15,7;UBERON:0000478,6.35e-14,24;UBERON:0004175,2.17e-11,25;UBERON:0005795,5.79e-11,22;UBERON:0001987,1.61e-10,4;UBERON:0004340,1.61e-10,4;UBERON:0000995,1.52e-09,21;UBERON:0000305,3.92e-09,7;UBERON:0003975,5.21e-09,22;UBERON:0003133,6.57e-09,48;UBERON:0005156,2.09e-08,59;UBERON:0000990,2.09e-08,59;UBERON:0004871,6.34e-08,8;UBERON:0006554,1.78e-07,47;UBERON:0001008,3.00e-07,48;UBERON:0003100,5.38e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,22.2810199572776,67.5243464264841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79929982279836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0,0,0,5.95954793514592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,1.39432731443422,4.5610864206763,0.504641701751257,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33678033231916,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,2.37061319387782,2.57545848628462,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0.207328115540772,0.144119953416961,1.64115163454294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0694614258501,0,0.184369168541703,0,0,0,0,0,0,8.48757200049526,228.016552129381,55.6398139726612,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.00253235151642,0.644566922551274,0,0,0,6.76799419361118,8.08661039596355,0,0,1.26661954671451,0,0,0,0,0,0,1.78413391131527,0.831076008928724,0.223874754722178,0,0,0,0,0,1.33953315142039,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,1.31535265576129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31801321087491,0.86101074534246,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.01363417949149,255.983554877734,7.6790175524808,0,0,0,0,0,2.98871982376605,0,0,0.102268682502155,0,0,0.449341755736634,3.58042349351218,0,1.38100767891707,0,0,0,0,0,7.812832832557,22.7395999990109,7.24999575434793,0.227586896570999,3.30529745380596,0.472775363535873,0,0,0,0,0,0,0,0,0,0,1.67308493134324,6.23297093880756,0,0.23056390438806,16.5154065713981,64.2105968059068,3.19001159731919,1.00757352742049,1.06606955203727,0,0,0,0,0,0,0,0,0,199.796957186797,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,37.5676068349612,0,7.10251925128903,8.46935012340647,0,0,0,0,0,0,0,0,4.26914319044689,0,21.0007283385508,0.783939179315021,0,33.8969736389538,0,0,0,0,0.0969890164884194,0,6.10148000107438,0,0,0,31.8748753857729,5.45079977710429,0.640358984218058,0.39961921916426,0,0,0,0,0,0.942776138467182,0,0,0,0,0,0,0,0,0,0,0,0,4.19325901047881,0,0,0,0,0,0,0,0,0.393709926058995,0,0,0,0,0,0,0,0,0,0,27.1091633109242,7.08136939822474,0,0,1.15149118391667,0,0,0,0,0,0,0,0,0,0,0.879313402068495,0,0,0,0.171086837884329,13.3914854240168,0.320362237703084,0.943225830597996,0,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0362910251936,0,0,0,0,0,0,1.72041036127604,0,0,0,0,0,0,0,4.35454082023081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,2.71330363699803,0,0.231051332300676,0,0,0,4.66304035765395,0,32.8235884717899,2.61906694481422,0,0.739280431085226,0,0,0,0,0,2.19303106742873,7.44316767583941,0,38.4564907195182,0,0,0,1.36597314810779,2.57236873471653,0,0,0,0,0,0,1.41287567130925,0,26.3455833514962,0,0.863710364874486,0,0,0,0,0,0,0.207216164163037,1.3657478167516,0,3.01159151174194,0,0,0,10.0807022159382,0,0,19.2391342692203,7.16496705391274,0.243835849964539,0,0,0,7.28566489588709,0,0,0,0,0,0,0,0,0,0.735444965261716,0.942706188406504,0,0,0,0,0,0,0,6.24938785119802,1.05868461514708,0,0.730336388246517,1.37618785021362,0,0,0,0,4.7612415646386,0,0,0,0,1.31118686356435,0.126698501011437,0.509944148709909,0,0.18378979906969,0,3.63737751447549,0,0,0,4.69114760182158,6.18967521805725,0.129177819672012,0.186224142887574,0,0,0,0.435433495793923,3.76456631193809,1.54909721933551,15.2051075432474,30.6047528022332,0.162806537221949,0,0,0,2.34640942403454,2.81155321620593,5.2896503181046,0.665756774185513,0,0 | |||
|short_description=p1@VTCN1 | |||
}} |
Revision as of 23:45, 11 September 2013
Short description: | p1@VTCN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_VTCN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000328189, ENST00000369458, ENST00000463461, uc001ehb.2, uc001ehc.2, uc009whf.1_5end |
EntrezGene: | VTCN1 |
HGNC: | 28873 |
UniProt: | Q7Z7D3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.64e-13 | 19 |
placental epithelial cell | 1.02e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.61e-22 | 14 |
membranous layer | 1.61e-22 | 14 |
chorion | 1.63e-15 | 7 |
extraembryonic structure | 6.35e-14 | 24 |
internal genitalia | 2.17e-11 | 25 |
embryonic uterus | 5.79e-11 | 22 |
placenta | 1.61e-10 | 4 |
allantois | 1.61e-10 | 4 |
uterus | 1.52e-09 | 21 |
amnion | 3.92e-09 | 7 |
internal female genitalia | 5.21e-09 | 22 |
reproductive organ | 6.57e-09 | 48 |
reproductive structure | 2.09e-08 | 59 |
reproductive system | 2.09e-08 | 59 |
somatic layer of lateral plate mesoderm | 6.34e-08 | 8 |
urinary system structure | 1.78e-07 | 47 |
renal system | 3.00e-07 | 48 |
female organism | 5.38e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 8.75e-10 | 4 |
breast cancer | 8.75e-10 | 4 |
adenocarcinoma | 2.27e-09 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.