FFCP PHASE1:Hg19::chr2:21231399..21231410,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=338|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=603|TSSclassifier=S|UniProt=Q13789|association_with_transcript=105bp_to_X03324_5end|coexpression_cluster_id=C5|description=CAGE_peak_35_at_APOB_5end|id=chr2:21231399..21231410,-|ontology_enrichment_celltype=CL:0000181!4.74e-40!12;CL:0000417!4.74e-40!12;CL:0000668!4.74e-40!12;CL:0000414!4.74e-40!12;CL:0000412!4.74e-40!12;CL:0000182!4.74e-40!12;CL:0000223!9.90e-14!59|ontology_enrichment_celltype_v019=CL:0000182;5.24e-54;12|ontology_enrichment_celltype_v019_2=CL:0000182,4.17e-54,12;CL:0000223,3.57e-11,58|ontology_enrichment_development_v019=UBERON:0004161;1.01e-40;11!UBERON:0009497;1.65e-34;13!UBERON:0001041;4.46e-15;30!UBERON:0003104;1.45e-14;31!CL:0000223;2.06e-08;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!2.60e-44!19;UBERON:0006925!2.60e-44!19;UBERON:0008836!2.60e-44!19;UBERON:0008835!3.39e-38!22;UBERON:0003894!3.39e-38!22;UBERON:0009854!1.64e-36!23;UBERON:0007499!1.52e-33!25;UBERON:0009497!1.52e-33!25;UBERON:0000015!1.52e-33!25;UBERON:0002423!1.52e-33!25;UBERON:0006235!1.52e-33!25;UBERON:0004161!1.52e-33!25;UBERON:0005057!3.13e-32!26;UBERON:0009856!3.13e-32!26;UBERON:0002365!6.19e-27!31;UBERON:0002330!6.19e-27!31;UBERON:0002368!8.77e-24!35;UBERON:0003929!1.53e-23!54;UBERON:0000949!2.39e-18!45;UBERON:0002530!2.10e-17!59;UBERON:0004921!8.36e-16!129;UBERON:0004185!8.36e-16!129;UBERON:0005911!3.84e-15!82;UBERON:0005172!6.99e-15!55;UBERON:0005173!6.99e-15!55;UBERON:0002417!2.41e-13!61;UBERON:0000916!2.41e-13!61;UBERON:0001007!6.36e-13!155;UBERON:0001555!6.36e-13!155;UBERON:0007026!6.36e-13!155;UBERON:0004119!9.84e-12!169;UBERON:0000925!9.84e-12!169;UBERON:0006595!9.84e-12!169;UBERON:0000490!1.58e-08!138;UBERON:0001041!5.26e-08!98;UBERON:0000160!9.56e-08!27;UBERON:0000077!2.32e-07!130;UBERON:0005177!2.91e-07!107;UBERON:0009569!7.85e-07!113|ontology_enrichment_uberon_v019=UBERON:0002107;3.99e-60;19!UBERON:0006925;3.99e-60;19!UBERON:0002423;1.16e-45;25!UBERON:0002365;2.20e-35;31!UBERON:0002330;2.20e-35;31!UBERON:0002368;3.37e-31;33!UBERON:0000949;8.16e-23;43!UBERON:0005172;1.31e-13;52!UBERON:0005173;1.31e-13;52!UBERON:0002417;6.07e-12;58!UBERON:0000916;6.07e-12;58!UBERON:0002530;7.98e-12;57!UBERON:0001007;4.63e-10;81|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.84e-60,19;UBERON:0006925,3.84e-60,19;UBERON:0008836,3.84e-60,19;UBERON:0008835,6.36e-52,22;UBERON:0003894,6.36e-52,22;UBERON:0009854,1.17e-49,23;UBERON:0007499,1.13e-45,25;UBERON:0009497,1.13e-45,25;UBERON:0000015,1.13e-45,25;UBERON:0002423,1.13e-45,25;UBERON:0006235,1.13e-45,25;UBERON:0004161,1.13e-45,25;UBERON:0009856,6.56e-44,26;UBERON:0002365,8.56e-37,31;UBERON:0002330,8.56e-37,31;UBERON:0002368,1.46e-32,35;UBERON:0000949,2.90e-25,45;UBERON:0003929,5.36e-21,54;UBERON:0005172,5.36e-21,54;UBERON:0005173,5.36e-21,54;UBERON:0002530,3.46e-19,59;UBERON:0002417,7.33e-19,60;UBERON:0000916,7.33e-19,60;UBERON:0005911,1.09e-13,82;UBERON:0001041,7.08e-13,87;UBERON:0004921,9.32e-12,118;UBERON:0005177,5.03e-11,101;UBERON:0009569,6.84e-10,112;UBERON:0001007,1.82e-09,145;UBERON:0001555,1.82e-09,145;UBERON:0007026,1.82e-09,145;UBERON:0003914,1.91e-09,117;UBERON:0005256,4.90e-09,122;UBERON:0004119,1.61e-08,160;UBERON:0000925,1.61e-08,160;UBERON:0006595,1.61e-08,160;UBERON:0000490,2.39e-07,148;UBERON:0001048,9.44e-07,160;UBERON:0003104,9.44e-07,160;UBERON:0009142,9.44e-07,160|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.478154526838,4.91413608338813,4.13552934676983,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.854738209659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38767683921062,2.14281231791033,1.95470277177136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3707013745959,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00652811080656,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p35@APOB}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=338 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=603 | |||
|TSSclassifier=S | |||
|UniProt=Q13789 | |||
|association_with_transcript=105bp_to_X03324_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_35_at_APOB_5end | |||
|id=chr2:21231399..21231410,- | |||
|ontology_enrichment_celltype=CL:0000181!4.74e-40!12;CL:0000417!4.74e-40!12;CL:0000668!4.74e-40!12;CL:0000414!4.74e-40!12;CL:0000412!4.74e-40!12;CL:0000182!4.74e-40!12;CL:0000223!9.90e-14!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;5.24e-54;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.17e-54,12;CL:0000223,3.57e-11,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.01e-40;11!UBERON:0009497;1.65e-34;13!UBERON:0001041;4.46e-15;30!UBERON:0003104;1.45e-14;31!CL:0000223;2.06e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!2.60e-44!19;UBERON:0006925!2.60e-44!19;UBERON:0008836!2.60e-44!19;UBERON:0008835!3.39e-38!22;UBERON:0003894!3.39e-38!22;UBERON:0009854!1.64e-36!23;UBERON:0007499!1.52e-33!25;UBERON:0009497!1.52e-33!25;UBERON:0000015!1.52e-33!25;UBERON:0002423!1.52e-33!25;UBERON:0006235!1.52e-33!25;UBERON:0004161!1.52e-33!25;UBERON:0005057!3.13e-32!26;UBERON:0009856!3.13e-32!26;UBERON:0002365!6.19e-27!31;UBERON:0002330!6.19e-27!31;UBERON:0002368!8.77e-24!35;UBERON:0003929!1.53e-23!54;UBERON:0000949!2.39e-18!45;UBERON:0002530!2.10e-17!59;UBERON:0004921!8.36e-16!129;UBERON:0004185!8.36e-16!129;UBERON:0005911!3.84e-15!82;UBERON:0005172!6.99e-15!55;UBERON:0005173!6.99e-15!55;UBERON:0002417!2.41e-13!61;UBERON:0000916!2.41e-13!61;UBERON:0001007!6.36e-13!155;UBERON:0001555!6.36e-13!155;UBERON:0007026!6.36e-13!155;UBERON:0004119!9.84e-12!169;UBERON:0000925!9.84e-12!169;UBERON:0006595!9.84e-12!169;UBERON:0000490!1.58e-08!138;UBERON:0001041!5.26e-08!98;UBERON:0000160!9.56e-08!27;UBERON:0000077!2.32e-07!130;UBERON:0005177!2.91e-07!107;UBERON:0009569!7.85e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.99e-60;19!UBERON:0006925;3.99e-60;19!UBERON:0002423;1.16e-45;25!UBERON:0002365;2.20e-35;31!UBERON:0002330;2.20e-35;31!UBERON:0002368;3.37e-31;33!UBERON:0000949;8.16e-23;43!UBERON:0005172;1.31e-13;52!UBERON:0005173;1.31e-13;52!UBERON:0002417;6.07e-12;58!UBERON:0000916;6.07e-12;58!UBERON:0002530;7.98e-12;57!UBERON:0001007;4.63e-10;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.84e-60,19;UBERON:0006925,3.84e-60,19;UBERON:0008836,3.84e-60,19;UBERON:0008835,6.36e-52,22;UBERON:0003894,6.36e-52,22;UBERON:0009854,1.17e-49,23;UBERON:0007499,1.13e-45,25;UBERON:0009497,1.13e-45,25;UBERON:0000015,1.13e-45,25;UBERON:0002423,1.13e-45,25;UBERON:0006235,1.13e-45,25;UBERON:0004161,1.13e-45,25;UBERON:0009856,6.56e-44,26;UBERON:0002365,8.56e-37,31;UBERON:0002330,8.56e-37,31;UBERON:0002368,1.46e-32,35;UBERON:0000949,2.90e-25,45;UBERON:0003929,5.36e-21,54;UBERON:0005172,5.36e-21,54;UBERON:0005173,5.36e-21,54;UBERON:0002530,3.46e-19,59;UBERON:0002417,7.33e-19,60;UBERON:0000916,7.33e-19,60;UBERON:0005911,1.09e-13,82;UBERON:0001041,7.08e-13,87;UBERON:0004921,9.32e-12,118;UBERON:0005177,5.03e-11,101;UBERON:0009569,6.84e-10,112;UBERON:0001007,1.82e-09,145;UBERON:0001555,1.82e-09,145;UBERON:0007026,1.82e-09,145;UBERON:0003914,1.91e-09,117;UBERON:0005256,4.90e-09,122;UBERON:0004119,1.61e-08,160;UBERON:0000925,1.61e-08,160;UBERON:0006595,1.61e-08,160;UBERON:0000490,2.39e-07,148;UBERON:0001048,9.44e-07,160;UBERON:0003104,9.44e-07,160;UBERON:0009142,9.44e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.478154526838,4.91413608338813,4.13552934676983,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.854738209659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38767683921062,2.14281231791033,1.95470277177136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3707013745959,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00652811080656,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p35@APOB | |||
}} |
Revision as of 16:25, 12 September 2013
Short description: | p35@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_35_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 105bp_to_X03324_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | Q13789 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.17e-54 | 12 |
endodermal cell | 3.57e-11 | 58 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.