FFCP PHASE1:Hg19::chr2:230817333..230817366,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C128|description=CAGE_peak_at_chr2:230817333..230817366,+|id=chr2:230817333..230817366,+|ontology_enrichment_celltype=CL:0002322!1.49e-58!5;CL:0000039!1.95e-42!7;CL:0000586!1.95e-42!7;CL:0000540!5.62e-18!6;CL:0000031!5.62e-18!6;CL:0000404!5.62e-18!6;CL:0000047!1.21e-13!8;CL:0000148!3.62e-11!10;CL:0000541!3.62e-11!10;CL:0000147!3.96e-08!14|ontology_enrichment_celltype_v019=CL:0002322;2.88e-97;5!CL:0000039;4.99e-46;7!CL:0000586;4.99e-46;7!CL:0002321;1.00e-32;15!CL:0000148;2.86e-18;10!CL:0000147;2.96e-13;14!CL:0000710;1.80e-09;20!CL:0000075;3.63e-07;27|ontology_enrichment_celltype_v019_2=CL:0002322,2.88e-97,5;CL:0000039,4.99e-46,7;CL:0000586,4.99e-46,7;CL:0000148,3.13e-18,10;CL:0000541,3.13e-18,10;CL:0000147,3.16e-13,14;CL:0000710,1.88e-09,20;CL:0000075,3.75e-07,27|ontology_enrichment_development_v019=UBERON:0009117;2.09e-32;10!UBERON:0005564;2.09e-32;10|ontology_enrichment_disease=DOID:3095!3.57e-19!22;DOID:2994!3.57e-19!22|ontology_enrichment_disease_v019=DOID:3095;7.29e-23;22!DOID:2994;7.29e-23;22|ontology_enrichment_disease_v019_2=DOID:3095,7.29e-23,22;DOID:2994,7.29e-23,22|ontology_enrichment_uberon=UBERON:0000473!4.06e-37!8;UBERON:0003135!5.04e-27!11;UBERON:0000991!3.69e-14!21;UBERON:0009196!3.69e-14!21;UBERON:0009117!3.69e-14!21;UBERON:0005564!3.69e-14!21;UBERON:0004176!1.63e-13!22;UBERON:0003101!1.63e-13!22;UBERON:0000079!1.63e-13!22|ontology_enrichment_uberon_v019=UBERON:0000473;2.35e-40;8!UBERON:0003135;1.64e-29;11!UBERON:0000922;5.16e-20;49!UBERON:0000991;1.09e-15;21!UBERON:0003101;5.37e-15;22!UBERON:0000079;5.37e-15;22!UBERON:0002323;3.54e-07;45|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.35e-40,8;UBERON:0003135,1.64e-29,11;UBERON:0000991,1.09e-15,21;UBERON:0009196,1.09e-15,21;UBERON:0009117,1.09e-15,21;UBERON:0005564,1.09e-15,21;UBERON:0004176,5.37e-15,22;UBERON:0003101,5.37e-15,22;UBERON:0000079,5.37e-15,22;UBERON:0002323,2.40e-07,46;UBERON:0003133,4.73e-07,48;UBERON:0004458,6.51e-07,49|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46368447355514,3.18071443971565,1.04574548582567,1.24393266018445,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.412618309791701,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95017044301978,0,11.9326930798119,11.7575658316847,4.31906027813771,4.26202816797038,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr2:230817333..230817366,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C128 | |||
|description=CAGE_peak_at_chr2:230817333..230817366,+ | |||
|id=chr2:230817333..230817366,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.49e-58!5;CL:0000039!1.95e-42!7;CL:0000586!1.95e-42!7;CL:0000540!5.62e-18!6;CL:0000031!5.62e-18!6;CL:0000404!5.62e-18!6;CL:0000047!1.21e-13!8;CL:0000148!3.62e-11!10;CL:0000541!3.62e-11!10;CL:0000147!3.96e-08!14 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.88e-97;5!CL:0000039;4.99e-46;7!CL:0000586;4.99e-46;7!CL:0002321;1.00e-32;15!CL:0000148;2.86e-18;10!CL:0000147;2.96e-13;14!CL:0000710;1.80e-09;20!CL:0000075;3.63e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.88e-97,5;CL:0000039,4.99e-46,7;CL:0000586,4.99e-46,7;CL:0000148,3.13e-18,10;CL:0000541,3.13e-18,10;CL:0000147,3.16e-13,14;CL:0000710,1.88e-09,20;CL:0000075,3.75e-07,27 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.09e-32;10!UBERON:0005564;2.09e-32;10 | |||
|ontology_enrichment_disease=DOID:3095!3.57e-19!22;DOID:2994!3.57e-19!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;7.29e-23;22!DOID:2994;7.29e-23;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.29e-23,22;DOID:2994,7.29e-23,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!4.06e-37!8;UBERON:0003135!5.04e-27!11;UBERON:0000991!3.69e-14!21;UBERON:0009196!3.69e-14!21;UBERON:0009117!3.69e-14!21;UBERON:0005564!3.69e-14!21;UBERON:0004176!1.63e-13!22;UBERON:0003101!1.63e-13!22;UBERON:0000079!1.63e-13!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.35e-40;8!UBERON:0003135;1.64e-29;11!UBERON:0000922;5.16e-20;49!UBERON:0000991;1.09e-15;21!UBERON:0003101;5.37e-15;22!UBERON:0000079;5.37e-15;22!UBERON:0002323;3.54e-07;45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.35e-40,8;UBERON:0003135,1.64e-29,11;UBERON:0000991,1.09e-15,21;UBERON:0009196,1.09e-15,21;UBERON:0009117,1.09e-15,21;UBERON:0005564,1.09e-15,21;UBERON:0004176,5.37e-15,22;UBERON:0003101,5.37e-15,22;UBERON:0000079,5.37e-15,22;UBERON:0002323,2.40e-07,46;UBERON:0003133,4.73e-07,48;UBERON:0004458,6.51e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46368447355514,3.18071443971565,1.04574548582567,1.24393266018445,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.412618309791701,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95017044301978,0,11.9326930798119,11.7575658316847,4.31906027813771,4.26202816797038,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:230817333..230817366,+ | |||
}} |
Revision as of 17:17, 12 September 2013
Short description: | p@chr2:230817333..230817366, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:230817333..230817366, + |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.88e-97 | 5 |
germ line cell | 4.99e-46 | 7 |
germ cell | 4.99e-46 | 7 |
melanocyte | 3.13e-18 | 10 |
melanoblast | 3.13e-18 | 10 |
pigment cell | 3.16e-13 | 14 |
neurecto-epithelial cell | 1.88e-09 | 20 |
columnar/cuboidal epithelial cell | 3.75e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
testis | 2.35e-40 | 8 |
male reproductive organ | 1.64e-29 | 11 |
gonad | 1.09e-15 | 21 |
indifferent external genitalia | 1.09e-15 | 21 |
indifferent gonad | 1.09e-15 | 21 |
gonad primordium | 1.09e-15 | 21 |
external genitalia | 5.37e-15 | 22 |
male organism | 5.37e-15 | 22 |
male reproductive system | 5.37e-15 | 22 |
body cavity | 2.40e-07 | 46 |
reproductive organ | 4.73e-07 | 48 |
body cavity or lining | 6.51e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.29e-23 | 22 |
germ cell cancer | 7.29e-23 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.