FFCP PHASE1:Hg19::chr3:124606049..124606060,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3693|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6160|TSSclassifier=S|UniProt=P18084|association_with_transcript=83bp_to_ENST00000296181,NM_002213,uc003eho.2_5end|coexpression_cluster_id=C2716|description=CAGE_peak_9_at_ITGB5_5end|id=chr3:124606049..124606060,-|ontology_enrichment_celltype=CL:0000055!5.56e-22!180;CL:0000136!9.61e-11!15;CL:0000057!3.40e-10!75;CL:0000680!3.90e-09!57;CL:0000056!3.90e-09!57;CL:0000355!3.90e-09!57;CL:0000183!5.66e-09!59;CL:0000192!1.20e-08!42;CL:0000514!1.20e-08!42;CL:0000187!6.80e-08!54;CL:0000325!1.12e-07!39;CL:0000393!2.02e-07!60;CL:0000211!2.02e-07!60;CL:0000359!5.50e-07!32|ontology_enrichment_celltype_v019=CL:0000136;2.84e-17;13!CL:0002334;5.54e-10;12|ontology_enrichment_celltype_v019_2=CL:0000136,2.79e-19,15;CL:0002334,1.42e-09,12;CL:0000048,2.35e-09,427;CL:0000723,7.68e-09,433;CL:0000034,1.43e-08,441;CL:0000057,4.94e-08,76|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;6.74e-07;14|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!1.15e-11!659;UBERON:0002100!5.39e-11!216;UBERON:0000475!3.00e-10!365;UBERON:0004923!1.31e-09!57;UBERON:0000467!1.67e-09!625;UBERON:0005256!2.05e-09!143;UBERON:0000480!2.62e-09!626;UBERON:0000486!5.50e-09!82;UBERON:0004290!7.09e-09!70;UBERON:0003914!1.12e-08!118;UBERON:0000914!1.47e-08!83;UBERON:0002329!1.47e-08!83;UBERON:0003077!1.47e-08!83;UBERON:0003059!1.47e-08!83;UBERON:0007282!1.47e-08!83;UBERON:0009618!1.47e-08!83;UBERON:0007285!1.47e-08!83;UBERON:0004872!2.16e-08!84;UBERON:0001134!6.80e-08!61;UBERON:0002036!6.80e-08!61;UBERON:0003082!6.80e-08!61;UBERON:0003104!7.10e-08!238;UBERON:0009142!7.10e-08!238;UBERON:0002385!7.26e-08!63;UBERON:0001015!7.26e-08!63;UBERON:0000383!7.26e-08!63;UBERON:0001981!2.44e-07!60;UBERON:0007500!2.44e-07!60;UBERON:0004537!2.44e-07!60;UBERON:0006965!2.44e-07!60;UBERON:0000481!2.75e-07!347;UBERON:0000483!3.17e-07!309;UBERON:0000119!3.20e-07!312|ontology_enrichment_uberon_v019=UBERON:0003688;2.42e-09;6!UBERON:0002358;2.42e-09;6!UBERON:0003684;2.42e-09;6!UBERON:0001178;2.42e-09;6!UBERON:0004457;1.13e-07;9!UBERON:0000042;1.13e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.36e-09,6;UBERON:0002358,2.36e-09,6;UBERON:0003684,2.36e-09,6;UBERON:0001178,2.36e-09,6;UBERON:0004923,1.12e-07,66;UBERON:0007503,1.56e-07,78;UBERON:0004573,2.12e-07,33;UBERON:0004571,2.12e-07,33;UBERON:0001637,5.02e-07,42;UBERON:0003509,5.02e-07,42;UBERON:0004572,5.02e-07,42|phase1_expression=7.63049192936338,5.99481466894753,8.03440103347036,9.00659685178174,2.68176656656373,8.72338524100369,10.1319951267324,3.79031924056099,1.04474251279935,0.245733936501509,0,0.436882744260345,1.31883489114227,0.495065411840187,0,2.6893005858071,0.602694528023977,2.19093027116212,0.975865597581014,0.738726348460727,1.63200552995402,0.940364164434263,0.286235987131057,0.958120975510189,0.753255837568817,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0.200544447470142,0,0.671746422719773,0.32389366601898,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.639312809217652,1.0843174571537,0.50133791063589,1.44846518960824,0.795285947051099,4.37971383272372,0.0945348171640679,0,0.43917392846563,0.654895377488563,0,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0.694281003215189,0,0,1.37559020970034,0.208994966536811,0.516833518338658,1.06729878806013,1.00416183829401,0.402829317109147,0.760272105718513,0.24406205754817,0,0,0.535798369704479,0.44905874525234,0.450445921933289,0,0,1.09921046358244,0,0,0.436094052142534,1.49091585508596,1.77282716330412,1.72131935057184,0.860509862246441,1.77334191099179,0.560677600142307,0,1.97334038733728,0.933633106199299,0.404132016209064,0.653847612453835,0.302714855289863,0.576175924479999,0.70296429550139,0.624320153660641,0,2.39117888882882,0.587172493218824,0.161872944368132,0.140450806702248,0.204154171254893,0.491337269247072,0.206651562351531,2.37600571456411,0.989067717114227,0,2.87447256726495,0,0.375355559615893,0.277064115484183,0.438977620880838,2.75839016219118,4.6573798261045,0.794025282120147,0.717558542755448,1.49490172172997,0.635795703478686,1.20036438433761,0.309157587715317,0.515281080091258,1.67505170698431,3.03797398034279,1.07180705677318,0.504867548488229,0.644349290496095,0.323292113637624,0.710019185033229,0.705264687593482,0.169560592310488,0.966304265816484,0.272746120590835,0.573609190778008,0.487894824518382,0,0.464775771478074,0.829288440122964,1.51392510525377,0,1.56449532329816,5.14592750554308,4.14404764057442,1.39310378409594,0.721879481669586,0.354920400119532,0.842923450390509,0.482022059766964,0.441175890929576,0.217879444092406,1.18635309555548,0.808987848960987,0.392442930250692,0.769494313892781,1.4763109092493,0,2.8810180793198,2.94017422771084,0,0,0,0,0.24597687708622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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3693 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6160 | |||
|TSSclassifier=S | |||
|UniProt=P18084 | |||
|association_with_transcript=83bp_to_ENST00000296181,NM_002213,uc003eho.2_5end | |||
|coexpression_cluster_id=C2716 | |||
|description=CAGE_peak_9_at_ITGB5_5end | |||
|id=chr3:124606049..124606060,- | |||
|ontology_enrichment_celltype=CL:0000055!5.56e-22!180;CL:0000136!9.61e-11!15;CL:0000057!3.40e-10!75;CL:0000680!3.90e-09!57;CL:0000056!3.90e-09!57;CL:0000355!3.90e-09!57;CL:0000183!5.66e-09!59;CL:0000192!1.20e-08!42;CL:0000514!1.20e-08!42;CL:0000187!6.80e-08!54;CL:0000325!1.12e-07!39;CL:0000393!2.02e-07!60;CL:0000211!2.02e-07!60;CL:0000359!5.50e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000136;2.84e-17;13!CL:0002334;5.54e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,2.79e-19,15;CL:0002334,1.42e-09,12;CL:0000048,2.35e-09,427;CL:0000723,7.68e-09,433;CL:0000034,1.43e-08,441;CL:0000057,4.94e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;6.74e-07;14 | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.15e-11!659;UBERON:0002100!5.39e-11!216;UBERON:0000475!3.00e-10!365;UBERON:0004923!1.31e-09!57;UBERON:0000467!1.67e-09!625;UBERON:0005256!2.05e-09!143;UBERON:0000480!2.62e-09!626;UBERON:0000486!5.50e-09!82;UBERON:0004290!7.09e-09!70;UBERON:0003914!1.12e-08!118;UBERON:0000914!1.47e-08!83;UBERON:0002329!1.47e-08!83;UBERON:0003077!1.47e-08!83;UBERON:0003059!1.47e-08!83;UBERON:0007282!1.47e-08!83;UBERON:0009618!1.47e-08!83;UBERON:0007285!1.47e-08!83;UBERON:0004872!2.16e-08!84;UBERON:0001134!6.80e-08!61;UBERON:0002036!6.80e-08!61;UBERON:0003082!6.80e-08!61;UBERON:0003104!7.10e-08!238;UBERON:0009142!7.10e-08!238;UBERON:0002385!7.26e-08!63;UBERON:0001015!7.26e-08!63;UBERON:0000383!7.26e-08!63;UBERON:0001981!2.44e-07!60;UBERON:0007500!2.44e-07!60;UBERON:0004537!2.44e-07!60;UBERON:0006965!2.44e-07!60;UBERON:0000481!2.75e-07!347;UBERON:0000483!3.17e-07!309;UBERON:0000119!3.20e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.42e-09;6!UBERON:0002358;2.42e-09;6!UBERON:0003684;2.42e-09;6!UBERON:0001178;2.42e-09;6!UBERON:0004457;1.13e-07;9!UBERON:0000042;1.13e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.36e-09,6;UBERON:0002358,2.36e-09,6;UBERON:0003684,2.36e-09,6;UBERON:0001178,2.36e-09,6;UBERON:0004923,1.12e-07,66;UBERON:0007503,1.56e-07,78;UBERON:0004573,2.12e-07,33;UBERON:0004571,2.12e-07,33;UBERON:0001637,5.02e-07,42;UBERON:0003509,5.02e-07,42;UBERON:0004572,5.02e-07,42 | |||
|phase1_expression=7.63049192936338,5.99481466894753,8.03440103347036,9.00659685178174,2.68176656656373,8.72338524100369,10.1319951267324,3.79031924056099,1.04474251279935,0.245733936501509,0,0.436882744260345,1.31883489114227,0.495065411840187,0,2.6893005858071,0.602694528023977,2.19093027116212,0.975865597581014,0.738726348460727,1.63200552995402,0.940364164434263,0.286235987131057,0.958120975510189,0.753255837568817,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0.200544447470142,0,0.671746422719773,0.32389366601898,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.639312809217652,1.0843174571537,0.50133791063589,1.44846518960824,0.795285947051099,4.37971383272372,0.0945348171640679,0,0.43917392846563,0.654895377488563,0,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0.694281003215189,0,0,1.37559020970034,0.208994966536811,0.516833518338658,1.06729878806013,1.00416183829401,0.402829317109147,0.760272105718513,0.24406205754817,0,0,0.535798369704479,0.44905874525234,0.450445921933289,0,0,1.09921046358244,0,0,0.436094052142534,1.49091585508596,1.77282716330412,1.72131935057184,0.860509862246441,1.77334191099179,0.560677600142307,0,1.97334038733728,0.933633106199299,0.404132016209064,0.653847612453835,0.302714855289863,0.576175924479999,0.70296429550139,0.624320153660641,0,2.39117888882882,0.587172493218824,0.161872944368132,0.140450806702248,0.204154171254893,0.491337269247072,0.206651562351531,2.37600571456411,0.989067717114227,0,2.87447256726495,0,0.375355559615893,0.277064115484183,0.438977620880838,2.75839016219118,4.6573798261045,0.794025282120147,0.717558542755448,1.49490172172997,0.635795703478686,1.20036438433761,0.309157587715317,0.515281080091258,1.67505170698431,3.03797398034279,1.07180705677318,0.504867548488229,0.644349290496095,0.323292113637624,0.710019185033229,0.705264687593482,0.169560592310488,0.966304265816484,0.272746120590835,0.573609190778008,0.487894824518382,0,0.464775771478074,0.829288440122964,1.51392510525377,0,1.56449532329816,5.14592750554308,4.14404764057442,1.39310378409594,0.721879481669586,0.354920400119532,0.842923450390509,0.482022059766964,0.441175890929576,0.217879444092406,1.18635309555548,0.808987848960987,0.392442930250692,0.769494313892781,1.4763109092493,0,2.8810180793198,2.94017422771084,0,0,0,0,0.245976877086227,1.02940686179115,0.768251997860379,0,0.201057944823262,0.185176890317059,0.651616610620649,0,0,0.115930404975077,1.40890433082986,0.144366447761074,0,0,1.58040879591855,0,0.492434012174795,1.8720341211139,0.743155811443641,0,0.503946384596579,0.141775097242386,0.716468181622786,0.581267877027924,0.766765358330422,0,0,0,0,0,0.190493682876507,1.52795370223311,1.17217447210047,0,0.514137463516618,0.901029173531752,0,0.672786506072164,0,0.51336800074665,3.36106460970222,0,0.845302752556,1.86156681609409,4.16029747645464,0.771622122786426,0,2.66422179016099,0.428933980974443,0,0,0.325736184293735,1.06617584622764,2.37585561880029,6.93310567237048,8.71533458600294,4.39881161201051,1.2162378064119,0,0,0.479249710983165,0,2.85273810081437,5.35690834670043,1.43833425785268,3.40215830155802,0,0,0,0,0.508189248444927,0,0,0.837581326671744,0.637938751653163,0,0,0.828831026872071,0.24538298343828,0,0.271265023699736,0.831883446123229,0.713715955188647,0.630809660135739,0.702848489956279,2.40756879782175,4.5481500811197,0,0.664225598535437,1.65932251687533,0,0.391602314925481,0.686286847621712,0.206768026122887,0.215714200818617,0,0.606255142892519,6.65741758041988,0.907170879989041,5.45837177201309,2.30192959932094,6.73584226639377,6.02254001501795,7.16390148693385,4.66476371316462,8.90508398669946,0.308419387605311,1.06537035187876,1.06765302817952,0,1.27831416305955,0.846016147141356,3.00759705454927,0.0920809889358963,0.574072240823034,0.364182336013434,0.917870904715969,0.902399225814824,0.0770153371044148,0.784349769176855,0,0.527758144464379,2.27466768141793,1.53084334748864,0.647747748306418,0,1.89662506280697,1.00337954770971,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0.512900250232778,1.64007322849853,1.62689197332152,0.824328093181778,0.54941678891006,0.41254749960294,0,0,0,0.193341436584244,0.308097234229289,0.15350367472613,0.964856007391714,0.214840489736547,0.145016693914229,0.170453254832202,0.178064071293475,0.165284915360978,0.576570202095319,0.382838137483752,0.30347334256665,2.32422774648643,2.51849877464512,0.6970372701606,1.84820148105653,1.59691809095107,1.73986598415015,2.03856641014312,1.00187420719394,1.116475108079,0,0.571890581771475,0.511795582622668,0,0.636406495851874,0,0.899362287916574,0.54907405947211,1.88499843753098,1.61745985258653,0,1.68503382495592,0.48763373908959,2.19342140668156,2.11300293513511,0.409499734223957,0.848432591722276,1.13008116620243,0.551365343546124,0.66343897524122,1.31535265576129,0.578775534266688,1.9676842561399,0.608731130888112,0,1.6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| |||
|short_description=p9@ITGB5 | |||
}} |
Revision as of 21:16, 12 September 2013
Short description: | p9@ITGB5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_ITGB5_5end |
Coexpression cluster: | C2716_Osteoblast_leiomyoma_Preadipocyte_Adipocyte_mesenchymal_Smooth_Mesothelial |
Association with transcript: | 83bp_to_ENST00000296181, NM_002213, uc003eho.2_5end |
EntrezGene: | ITGB5 |
HGNC: | 6160 |
UniProt: | P18084 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 2.79e-19 | 15 |
preadipocyte | 1.42e-09 | 12 |
multi fate stem cell | 2.35e-09 | 427 |
somatic stem cell | 7.68e-09 | 433 |
stem cell | 1.43e-08 | 441 |
fibroblast | 4.94e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.36e-09 | 6 |
peritoneum | 2.36e-09 | 6 |
abdominal cavity | 2.36e-09 | 6 |
visceral peritoneum | 2.36e-09 | 6 |
organ component layer | 1.12e-07 | 66 |
epithelial vesicle | 1.56e-07 | 78 |
systemic artery | 2.12e-07 | 33 |
systemic arterial system | 2.12e-07 | 33 |
artery | 5.02e-07 | 42 |
arterial blood vessel | 5.02e-07 | 42 |
arterial system | 5.02e-07 | 42 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.