FFCP PHASE1:Hg19::chr4:39628730..39628747,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C36|description=CAGE_peak_at_chr4:39628730..39628747,-|id=chr4:39628730..39628747,-|ontology_enrichment_celltype=CL:0000945!9.13e-31!24;CL:0000826!9.13e-31!24;CL:0000236!5.67e-20!14;CL:0000542!1.43e-11!53;CL:0000051!1.43e-11!53;CL:0002087!3.94e-11!119;CL:0000838!1.05e-10!52;CL:0000738!3.23e-10!140;CL:0002031!1.74e-07!124;CL:0000037!6.44e-07!172;CL:0000566!6.44e-07!172|ontology_enrichment_celltype_v019=CL:0000945;3.53e-67;24!CL:0000236;3.44e-37;13!CL:0000542;8.48e-19;53!CL:0000453;6.61e-07;5|ontology_enrichment_celltype_v019_2=CL:0000945,3.22e-67,24;CL:0000826,3.22e-67,24;CL:0000236,3.60e-40,14;CL:0000542,5.80e-30,53;CL:0000051,5.80e-30,53;CL:0000838,9.88e-28,52;CL:0000738,4.96e-13,136;CL:0002087,1.26e-12,115;CL:0002031,1.24e-09,120;CL:0000037,2.93e-09,168;CL:0002032,4.45e-09,161;CL:0000837,4.45e-09,161;CL:0000988,1.87e-08,177;CL:0000785,8.15e-08,2;CL:0000955,8.15e-08,2;CL:0000818,8.15e-08,2;CL:0000954,8.15e-08,2;CL:0000816,8.15e-08,2;CL:0000453,6.61e-07,5|ontology_enrichment_development_v019=CL:0000051;8.48e-19;53!UBERON:0004872;6.49e-08;7!CL:0000954;8.57e-08;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060058;3.50e-12;10|ontology_enrichment_disease_v019_2=DOID:0060058,4.10e-12,10|ontology_enrichment_uberon=UBERON:0000178!8.53e-08!15;UBERON:0000179!8.53e-08!15;UBERON:0000463!8.53e-08!15|ontology_enrichment_uberon_v019=UBERON:0004177;3.67e-16;5!UBERON:0005057;3.67e-16;5!UBERON:0002390;1.71e-12;32!UBERON:0000178;3.72e-12;15!UBERON:0000179;3.72e-12;15!UBERON:0000463;3.72e-12;15!UBERON:0002106;9.43e-11;3!UBERON:0002193;7.32e-10;42!UBERON:0004921;1.84e-08;33!UBERON:0000160;7.01e-08;17!UBERON:0002370;4.13e-07;2!UBERON:0005058;4.13e-07;2!UBERON:0009113;4.13e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.85e-12,15;UBERON:0000179,2.85e-12,15;UBERON:0000463,2.85e-12,15;UBERON:0004177,2.14e-11,7;UBERON:0005057,2.14e-11,7;UBERON:0002106,1.23e-10,3;UBERON:0004854,1.23e-10,3;UBERON:0009034,1.23e-10,3;UBERON:0002095,1.23e-10,3;UBERON:0004782,1.23e-10,3;UBERON:0003281,1.23e-10,3;UBERON:0009664,1.23e-10,3;UBERON:0002296,1.23e-10,3;UBERON:0005602,1.23e-10,3;UBERON:0001179,1.23e-10,3;UBERON:0006293,1.23e-10,3;UBERON:0005409,1.34e-10,25;UBERON:0000160,6.77e-08,17|phase1_expression=0,0,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,136.015862231353,154.595409934248,167.339121072882,0,0,0.309632246632152,0,0,0,340.158477748104,73.3593239635095,0.880801318004542,0,0.200544447470142,0,0.223915474239924,0,0,0,0,0.242584061187816,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0.398927315243264,0,0,0,0,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,49.2789484491704,26.7607919518444,50.7020274702226,46.0868640371828,40.4399946906373,31.6113841974966,37.0185128759523,38.1621501814146,12.5226853204079,15.8554041130153,26.3768527406408,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0,0.795285947051099,0,0,0,0.087834785693126,0.196468613246569,0,0,0.324547393654683,0.348259474598534,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.76436411987125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40402559083543,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,0.862856803274467,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,7.00984807631409,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,0,0.154048617114644,0.15350367472613,0,0,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,2.53723804616085,2.29391162142713,1.70894156152249,1.42939065274673,3.29089818468955,0,1.62009431171434,1.58625035258854,0.106824071127473,0,0,166.108038562393,0.577076851905779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,18.5110223405869,0,0,6.89274910581989,0.311039587661807,0.0898683511473268,0,0.511572370226872,1.28236427328014,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.5443552858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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C36 | |||
|description=CAGE_peak_at_chr4:39628730..39628747,- | |||
|id=chr4:39628730..39628747,- | |||
|ontology_enrichment_celltype=CL:0000945!9.13e-31!24;CL:0000826!9.13e-31!24;CL:0000236!5.67e-20!14;CL:0000542!1.43e-11!53;CL:0000051!1.43e-11!53;CL:0002087!3.94e-11!119;CL:0000838!1.05e-10!52;CL:0000738!3.23e-10!140;CL:0002031!1.74e-07!124;CL:0000037!6.44e-07!172;CL:0000566!6.44e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000945;3.53e-67;24!CL:0000236;3.44e-37;13!CL:0000542;8.48e-19;53!CL:0000453;6.61e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,3.22e-67,24;CL:0000826,3.22e-67,24;CL:0000236,3.60e-40,14;CL:0000542,5.80e-30,53;CL:0000051,5.80e-30,53;CL:0000838,9.88e-28,52;CL:0000738,4.96e-13,136;CL:0002087,1.26e-12,115;CL:0002031,1.24e-09,120;CL:0000037,2.93e-09,168;CL:0002032,4.45e-09,161;CL:0000837,4.45e-09,161;CL:0000988,1.87e-08,177;CL:0000785,8.15e-08,2;CL:0000955,8.15e-08,2;CL:0000818,8.15e-08,2;CL:0000954,8.15e-08,2;CL:0000816,8.15e-08,2;CL:0000453,6.61e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000051;8.48e-19;53!UBERON:0004872;6.49e-08;7!CL:0000954;8.57e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.50e-12;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,4.10e-12,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!8.53e-08!15;UBERON:0000179!8.53e-08!15;UBERON:0000463!8.53e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;3.67e-16;5!UBERON:0005057;3.67e-16;5!UBERON:0002390;1.71e-12;32!UBERON:0000178;3.72e-12;15!UBERON:0000179;3.72e-12;15!UBERON:0000463;3.72e-12;15!UBERON:0002106;9.43e-11;3!UBERON:0002193;7.32e-10;42!UBERON:0004921;1.84e-08;33!UBERON:0000160;7.01e-08;17!UBERON:0002370;4.13e-07;2!UBERON:0005058;4.13e-07;2!UBERON:0009113;4.13e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.85e-12,15;UBERON:0000179,2.85e-12,15;UBERON:0000463,2.85e-12,15;UBERON:0004177,2.14e-11,7;UBERON:0005057,2.14e-11,7;UBERON:0002106,1.23e-10,3;UBERON:0004854,1.23e-10,3;UBERON:0009034,1.23e-10,3;UBERON:0002095,1.23e-10,3;UBERON:0004782,1.23e-10,3;UBERON:0003281,1.23e-10,3;UBERON:0009664,1.23e-10,3;UBERON:0002296,1.23e-10,3;UBERON:0005602,1.23e-10,3;UBERON:0001179,1.23e-10,3;UBERON:0006293,1.23e-10,3;UBERON:0005409,1.34e-10,25;UBERON:0000160,6.77e-08,17 | |||
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|short_description=p@chr4:39628730..39628747,- | |||
}} |
Revision as of 10:50, 13 September 2013
Short description: | p@chr4:39628730..39628747, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:39628730..39628747, - |
Coexpression cluster: | C36_B_b_splenic_plasma_xeroderma_adrenal_Burkitt |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 3.22e-67 | 24 |
pro-B cell | 3.22e-67 | 24 |
B cell | 3.60e-40 | 14 |
lymphocyte | 5.80e-30 | 53 |
common lymphoid progenitor | 5.80e-30 | 53 |
lymphoid lineage restricted progenitor cell | 9.88e-28 | 52 |
leukocyte | 4.96e-13 | 136 |
nongranular leukocyte | 1.26e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 1.24e-09 | 120 |
hematopoietic stem cell | 2.93e-09 | 168 |
hematopoietic oligopotent progenitor cell | 4.45e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.45e-09 | 161 |
hematopoietic cell | 1.87e-08 | 177 |
mature B cell | 8.15e-08 | 2 |
pre-B-II cell | 8.15e-08 | 2 |
transitional stage B cell | 8.15e-08 | 2 |
small pre-B-II cell | 8.15e-08 | 2 |
immature B cell | 8.15e-08 | 2 |
Langerhans cell | 6.61e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
blood | 2.85e-12 | 15 |
haemolymphatic fluid | 2.85e-12 | 15 |
organism substance | 2.85e-12 | 15 |
hemopoietic organ | 2.14e-11 | 7 |
immune organ | 2.14e-11 | 7 |
spleen | 1.23e-10 | 3 |
gastrointestinal system mesentery | 1.23e-10 | 3 |
stomach region | 1.23e-10 | 3 |
mesentery | 1.23e-10 | 3 |
gastrointestinal system serosa | 1.23e-10 | 3 |
mesentery of stomach | 1.23e-10 | 3 |
gut mesentery | 1.23e-10 | 3 |
dorsal mesentery | 1.23e-10 | 3 |
dorsal mesogastrium | 1.23e-10 | 3 |
peritoneal cavity | 1.23e-10 | 3 |
spleen primordium | 1.23e-10 | 3 |
gastrointestinal system | 1.34e-10 | 25 |
intestine | 6.77e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 4.10e-12 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.