FFCP PHASE1:Hg19::chr7:134576317..134576374,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=800|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1441|TSSclassifier=S|UniProt=E7EX44|association_with_transcript=0bp_to_ENST00000424922,ENST00000495522_5end|coexpression_cluster_id=C2879|description=CAGE_peak_3_at_CALD1_5end|id=chr7:134576317..134576374,+|ontology_enrichment_celltype=CL:0000223!5.23e-09!59;CL:0000066!2.94e-08!254|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000223,1.53e-08,58;CL:0000066,6.69e-08,253|ontology_enrichment_development_v019=UBERON:0003104;2.59e-07;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000481!1.16e-23!347;UBERON:0004119!8.43e-19!169;UBERON:0000925!8.43e-19!169;UBERON:0006595!8.43e-19!169;UBERON:0000475!1.54e-18!365;UBERON:0003104!3.79e-17!238;UBERON:0009142!3.79e-17!238;UBERON:0001007!1.69e-16!155;UBERON:0001555!1.69e-16!155;UBERON:0007026!1.69e-16!155;UBERON:0000468!6.48e-15!659;UBERON:0000077!1.07e-13!130;UBERON:0000062!1.35e-13!511;UBERON:0004921!3.44e-13!129;UBERON:0004185!3.44e-13!129;UBERON:0000467!1.98e-12!625;UBERON:0001048!2.78e-12!168;UBERON:0000480!3.64e-12!626;UBERON:0002100!6.00e-12!216;UBERON:0000922!6.16e-12!612;UBERON:0002050!3.27e-11!605;UBERON:0005423!3.27e-11!605;UBERON:0000923!5.06e-11!604;UBERON:0005291!5.06e-11!604;UBERON:0006598!5.06e-11!604;UBERON:0002532!5.06e-11!604;UBERON:0000119!1.14e-09!312;UBERON:0005256!2.35e-09!143;UBERON:0000483!3.33e-09!309;UBERON:0002530!4.86e-09!59;UBERON:0000477!8.60e-09!286;UBERON:0003102!1.17e-08!95;UBERON:0000161!2.34e-08!35;UBERON:0001041!2.56e-08!98;UBERON:0005177!2.65e-08!107;UBERON:0000064!3.13e-08!219;UBERON:0000466!4.85e-08!126;UBERON:0001004!1.94e-07!72;UBERON:0002365!3.60e-07!31;UBERON:0002330!3.60e-07!31;UBERON:0003929!4.16e-07!54|ontology_enrichment_uberon_v019=UBERON:0002365;7.41e-07;31!UBERON:0002330;7.41e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.79e-17,160;UBERON:0000925,3.79e-17,160;UBERON:0006595,3.79e-17,160;UBERON:0001007,1.56e-14,145;UBERON:0001555,1.56e-14,145;UBERON:0007026,1.56e-14,145;UBERON:0003104,1.11e-11,160;UBERON:0009142,1.11e-11,160;UBERON:0004921,1.36e-11,118;UBERON:0011216,1.99e-11,223;UBERON:0001048,2.11e-11,160;UBERON:0002100,4.08e-10,199;UBERON:0003102,4.80e-09,99;UBERON:0002530,6.06e-09,59;UBERON:0000119,1.62e-08,309;UBERON:0000922,1.86e-08,592;UBERON:0005256,2.95e-08,122;UBERON:0000161,3.47e-08,36;UBERON:0000483,4.45e-08,306;UBERON:0001004,1.06e-07,74;UBERON:0005423,1.12e-07,581;UBERON:0004923,2.90e-07,66;UBERON:0005177,3.52e-07,101;UBERON:0001041,5.44e-07,87;UBERON:0003929,5.57e-07,54;UBERON:0002365,6.47e-07,31;UBERON:0002330,6.47e-07,31|phase1_expression=25.798329856419,36.3970890614671,16.3507108751327,5.00366491765652,16.0905993993824,3.48935409640147,5.06599756336621,24.0053551902196,6.00726944859629,4.17747692052565,4.88460817580699,33.4215299359164,30.8607364527291,36.7586068291338,24.5234058038658,4.70627602516243,2.41077811209591,2.19093027116212,2.43966399395253,5.17108443922509,3.67201244239655,2.5076377718247,3.14859585844162,3.42186062682211,1.12988375635323,0.152826811495903,0.328402357799783,0.157421562627358,0,0,0.464448369948228,18.3884244895785,10.5422071572388,12.5716363456708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.26479403160043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5045493051169,18.1089232119982,14.959919735693,9.39741796199872,4.51204119572301,11.1531819599834,10.3387173116643,1.94653948121054,9.64255135073492,7.53879951372717,7.11461764114321,13.7528029272598,1.45718115317017,4.07862887062872,0.324547393654683,0.174129737299267,0,0,0,0,0,3.4409383804245,0,0,0,0,0,2.06733407335463,1.77883131343355,5.02080919147005,3.22263453687318,3.04108842287405,6.34561349625241,1.10298924103761,0,1.87529429396568,2.46982309888787,2.47745257063309,0,0,0.183201743930407,0,0,6.97750483428055,0.993943903390637,7.85109172320394,2.25095607382472,17.2101972449288,12.7680617591409,5.04609840128076,1.06748995729705,0.98667019366864,56.3291974073577,12.2586711583416,16.5096522144593,26.0334775549282,26.5040925260799,14.996571637363,19.9782449171405,9.12754914471119,26.1535190965652,26.6576311921346,23.3097039890109,22.050776652253,54.5091637250565,15.354289663971,110.145282733366,3.56400857184616,2.22540236350701,16.3829045148845,7.18618141816238,22.2203670419367,24.0227558154171,46.2697072858586,3.95079858792754,0.919463387397059,1.65261864797256,5.10444824220095,4.12596162084383,2.98980344345994,5.51022943014861,8.40255069036326,17.1067198535809,4.3798891807757,3.53622027030021,20.0843835367107,7.79496041289589,11.8643873894734,7.73219148595314,30.2278126251178,2.84007674013291,2.51880245569101,3.39121184620975,30.3419539466376,15.0010366324959,30.1144825158454,4.39105342066543,3.97589304964456,8.36596388660532,10.0551223364909,11.1021174385276,6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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=800 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1441 | |||
|TSSclassifier=S | |||
|UniProt=E7EX44 | |||
|association_with_transcript=0bp_to_ENST00000424922,ENST00000495522_5end | |||
|coexpression_cluster_id=C2879 | |||
|description=CAGE_peak_3_at_CALD1_5end | |||
|id=chr7:134576317..134576374,+ | |||
|ontology_enrichment_celltype=CL:0000223!5.23e-09!59;CL:0000066!2.94e-08!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.53e-08,58;CL:0000066,6.69e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0003104;2.59e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.16e-23!347;UBERON:0004119!8.43e-19!169;UBERON:0000925!8.43e-19!169;UBERON:0006595!8.43e-19!169;UBERON:0000475!1.54e-18!365;UBERON:0003104!3.79e-17!238;UBERON:0009142!3.79e-17!238;UBERON:0001007!1.69e-16!155;UBERON:0001555!1.69e-16!155;UBERON:0007026!1.69e-16!155;UBERON:0000468!6.48e-15!659;UBERON:0000077!1.07e-13!130;UBERON:0000062!1.35e-13!511;UBERON:0004921!3.44e-13!129;UBERON:0004185!3.44e-13!129;UBERON:0000467!1.98e-12!625;UBERON:0001048!2.78e-12!168;UBERON:0000480!3.64e-12!626;UBERON:0002100!6.00e-12!216;UBERON:0000922!6.16e-12!612;UBERON:0002050!3.27e-11!605;UBERON:0005423!3.27e-11!605;UBERON:0000923!5.06e-11!604;UBERON:0005291!5.06e-11!604;UBERON:0006598!5.06e-11!604;UBERON:0002532!5.06e-11!604;UBERON:0000119!1.14e-09!312;UBERON:0005256!2.35e-09!143;UBERON:0000483!3.33e-09!309;UBERON:0002530!4.86e-09!59;UBERON:0000477!8.60e-09!286;UBERON:0003102!1.17e-08!95;UBERON:0000161!2.34e-08!35;UBERON:0001041!2.56e-08!98;UBERON:0005177!2.65e-08!107;UBERON:0000064!3.13e-08!219;UBERON:0000466!4.85e-08!126;UBERON:0001004!1.94e-07!72;UBERON:0002365!3.60e-07!31;UBERON:0002330!3.60e-07!31;UBERON:0003929!4.16e-07!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0002365;7.41e-07;31!UBERON:0002330;7.41e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.79e-17,160;UBERON:0000925,3.79e-17,160;UBERON:0006595,3.79e-17,160;UBERON:0001007,1.56e-14,145;UBERON:0001555,1.56e-14,145;UBERON:0007026,1.56e-14,145;UBERON:0003104,1.11e-11,160;UBERON:0009142,1.11e-11,160;UBERON:0004921,1.36e-11,118;UBERON:0011216,1.99e-11,223;UBERON:0001048,2.11e-11,160;UBERON:0002100,4.08e-10,199;UBERON:0003102,4.80e-09,99;UBERON:0002530,6.06e-09,59;UBERON:0000119,1.62e-08,309;UBERON:0000922,1.86e-08,592;UBERON:0005256,2.95e-08,122;UBERON:0000161,3.47e-08,36;UBERON:0000483,4.45e-08,306;UBERON:0001004,1.06e-07,74;UBERON:0005423,1.12e-07,581;UBERON:0004923,2.90e-07,66;UBERON:0005177,3.52e-07,101;UBERON:0001041,5.44e-07,87;UBERON:0003929,5.57e-07,54;UBERON:0002365,6.47e-07,31;UBERON:0002330,6.47e-07,31 | |||
|phase1_expression=25.798329856419,36.3970890614671,16.3507108751327,5.00366491765652,16.0905993993824,3.48935409640147,5.06599756336621,24.0053551902196,6.00726944859629,4.17747692052565,4.88460817580699,33.4215299359164,30.8607364527291,36.7586068291338,24.5234058038658,4.70627602516243,2.41077811209591,2.19093027116212,2.43966399395253,5.17108443922509,3.67201244239655,2.5076377718247,3.14859585844162,3.42186062682211,1.12988375635323,0.152826811495903,0.328402357799783,0.157421562627358,0,0,0.464448369948228,18.3884244895785,10.5422071572388,12.5716363456708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.26479403160043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5045493051169,18.1089232119982,14.959919735693,9.39741796199872,4.51204119572301,11.1531819599834,10.3387173116643,1.94653948121054,9.64255135073492,7.53879951372717,7.11461764114321,13.7528029272598,1.45718115317017,4.07862887062872,0.324547393654683,0.174129737299267,0,0,0,0,0,3.4409383804245,0,0,0,0,0,2.06733407335463,1.77883131343355,5.02080919147005,3.22263453687318,3.04108842287405,6.34561349625241,1.10298924103761,0,1.87529429396568,2.46982309888787,2.47745257063309,0,0,0.183201743930407,0,0,6.97750483428055,0.993943903390637,7.85109172320394,2.25095607382472,17.2101972449288,12.7680617591409,5.04609840128076,1.06748995729705,0.98667019366864,56.3291974073577,12.2586711583416,16.5096522144593,26.0334775549282,26.5040925260799,14.996571637363,19.9782449171405,9.12754914471119,26.1535190965652,26.6576311921346,23.3097039890109,22.050776652253,54.5091637250565,15.354289663971,110.145282733366,3.56400857184616,2.22540236350701,16.3829045148845,7.18618141816238,22.2203670419367,24.0227558154171,46.2697072858586,3.95079858792754,0.919463387397059,1.65261864797256,5.10444824220095,4.12596162084383,2.98980344345994,5.51022943014861,8.40255069036326,17.1067198535809,4.3798891807757,3.53622027030021,20.0843835367107,7.79496041289589,11.8643873894734,7.73219148595314,30.2278126251178,2.84007674013291,2.51880245569101,3.39121184620975,30.3419539466376,15.0010366324959,30.1144825158454,4.39105342066543,3.97589304964456,8.36596388660532,10.0551223364909,11.1021174385276,6.20461510428911,0,5.14592750554308,0,18.1103491932472,23.1001434134267,32.7709836110368,32.8740145652298,30.1263787354352,35.845541138028,25.7097744029039,28.9470155315538,34.7864775053224,35.9085281179383,30.0102782418185,0.738155454624648,1.40241773803446,10.7009242946164,0,125.487484473613,53.0726697005918,77.9842676819453,0,23.4907917617347,17.1567810298526,34.2420890474912,7.86812272803337,4.72486170334665,16.0178010124256,11.7290989911717,9.35941306751621,2.88662684050547,12.8682749522335,5.04857385214033,2.45422961193825,3.24089858803628,12.3665198952489,0,0,0,0,0,10.3107217385455,9.07103492273841,15.5952606966625,48.6302778276466,35.1667065601894,20.7026646749214,0,0,0.207328115540772,0.288239906833923,0.50496973370552,25.7166471883285,8.78573378784039,0,5.13217338068116,7.60923446004594,45.0514586765876,25.724378936752,16.0347450613866,19.6182030974976,20.0946903149403,2.19761916788222,35.7656445851882,21.977871566456,0.531876233169741,0,5.91576960802927,2.83698264046557,2.93064396917709,45.7529579706072,27.6737018749636,17.2880470723961,16.9382815832742,40.1592902079077,20.5907486962692,20.1964382629923,5.22920075160176,23.1937339542372,0,0,0,0,1.14861935834114,54.202023915473,17.2289754934419,32.4652589629606,51.5695574130899,0,0,0,0,20.5816645620195,10.4111883086097,2.31986643833309,1.84267891867784,0,0,0,0,33.4947772393252,29.5100607425209,12.4781910901878,3.74347550755453,3.56857977594324,2.05013139544115,5.97421216462837,1.20378439891088,4.5481500811197,19.6598835455759,0.664225598535437,1.65932251687533,28.4109419310631,9.59425671567429,7.54915532383883,0,0,0,18.7939094296681,49.9306318531491,34.4724934395836,10.6686357362074,8.13348458426731,8.70046292742528,8.84160129864337,6.14048698880044,2.0911009748669,4.45254199334973,15.4209693802656,15.6254318275552,26.4449442364465,31.6745201802009,17.199136012074,21.9964198256752,22.6572311442712,18.2320358093075,16.4184660875388,17.2986609606381,15.3415565502526,1.80479845162965,11.0131932059313,4.70609861506113,2.92278449306521,14.8827796738955,1.13733384070897,0.510281115829547,7.34114114747274,1.54227252690289,8.12839312631558,4.51520796469368,6.88165937221603,1.66215201785745,4.47749509444357,0,0,4.61610225209501,2.29610251989794,11.7136222079149,112.417743707665,0,0,18.3764972158775,20.1518676271322,3.21367859688319,23.6843259815699,42.5174183236418,48.9676722376353,25.2240927646691,81.2097051204149,58.4417276474341,31.8747586536217,13.7109334895976,48.4284802007666,45.7412360328953,40.198004435794,45.5210013849975,4.18360994367557,3.1481234683064,1.3940745403212,4.00443654228915,0.532306030317022,1.73986598415015,0.18532421910392,0.143124886741991,37.5879953053264,1.58189712359363,3.8126038784765,3.32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| |||
|short_description=p3@CALD1 | |||
}} |
Revision as of 23:21, 13 September 2013
Short description: | p3@CALD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CALD1_5end |
Coexpression cluster: | C2879_salivary_Fibroblast_vagina_liver_Hepatocyte_Skeletal_hepatoblastoma |
Association with transcript: | 0bp_to_ENST00000424922, ENST00000495522_5end |
EntrezGene: | CALD1 |
HGNC: | 1441 |
UniProt: | E7EX44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.53e-08 | 58 |
epithelial cell | 6.69e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.79e-17 | 160 |
endoderm | 3.79e-17 | 160 |
presumptive endoderm | 3.79e-17 | 160 |
digestive system | 1.56e-14 | 145 |
digestive tract | 1.56e-14 | 145 |
primitive gut | 1.56e-14 | 145 |
mesenchyme | 1.11e-11 | 160 |
entire embryonic mesenchyme | 1.11e-11 | 160 |
subdivision of digestive tract | 1.36e-11 | 118 |
organ system subdivision | 1.99e-11 | 223 |
primordium | 2.11e-11 | 160 |
trunk | 4.08e-10 | 199 |
surface structure | 4.80e-09 | 99 |
gland | 6.06e-09 | 59 |
cell layer | 1.62e-08 | 309 |
embryo | 1.86e-08 | 592 |
trunk mesenchyme | 2.95e-08 | 122 |
orifice | 3.47e-08 | 36 |
epithelium | 4.45e-08 | 306 |
respiratory system | 1.06e-07 | 74 |
developing anatomical structure | 1.12e-07 | 581 |
organ component layer | 2.90e-07 | 66 |
trunk region element | 3.52e-07 | 101 |
foregut | 5.44e-07 | 87 |
gut epithelium | 5.57e-07 | 54 |
exocrine gland | 6.47e-07 | 31 |
exocrine system | 6.47e-07 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.