FFCP PHASE1:Hg19::chr7:20257377..20257401,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:20257377..20257401,+|id=chr7:20257377..20257401,+|ontology_enrichment_celltype=CL:0000066!1.52e-18!254;CL:0002076!3.24e-18!43;CL:0000223!2.81e-12!59;CL:0002368!2.14e-10!13;CL:0002251!1.30e-08!21|ontology_enrichment_celltype_v019=CL:0000244;1.59e-11;4!CL:0000731;1.59e-11;4!CL:0000575;1.06e-10;2!CL:0002076;3.22e-09;42!CL:0000307;8.33e-08;3!CL:1001319;9.04e-07;1!CL:1000600;9.04e-07;1|ontology_enrichment_celltype_v019_2=CL:0000066,3.91e-15,253;CL:0002076,7.86e-13,42;CL:0000244,1.28e-11,4;CL:0000731,1.28e-11,4;CL:0000223,2.17e-10,58;CL:0000575,2.47e-10,2;CL:0000076,4.09e-09,63;CL:0000068,8.93e-08,3;CL:0000069,8.93e-08,3;CL:0000307,8.93e-08,3;CL:0000377,8.93e-08,3;CL:1001319,8.81e-07,1;CL:1000600,8.81e-07,1|ontology_enrichment_development_v019=CL:0000377;8.33e-08;3|ontology_enrichment_disease=DOID:305!8.31e-21!106;DOID:1749!2.15e-18!14;DOID:0050687!1.64e-12!143;DOID:299!3.29e-11!25;DOID:162!8.56e-09!235;DOID:14566!2.72e-08!239|ontology_enrichment_disease_v019=DOID:1749;5.09e-35;14!DOID:0050615;7.70e-11;16!DOID:1324;3.77e-08;15!DOID:299;6.33e-07;25!DOID:305;8.38e-07;106|ontology_enrichment_disease_v019_2=DOID:1749,7.61e-35,14;DOID:305,1.79e-20,106;DOID:0050687,7.76e-14,143;DOID:0050615,6.63e-11,16;DOID:1324,3.13e-08,15;DOID:162,4.79e-08,235;DOID:14566,9.07e-08,239;DOID:299,6.19e-07,25|ontology_enrichment_uberon=UBERON:0004119!8.69e-14!169;UBERON:0000925!8.69e-14!169;UBERON:0006595!8.69e-14!169;UBERON:0000344!9.64e-12!12;UBERON:0001007!5.50e-11!155;UBERON:0001555!5.50e-11!155;UBERON:0007026!5.50e-11!155;UBERON:0001004!2.70e-10!72;UBERON:0005178!5.71e-10!34;UBERON:0002224!5.71e-10!34;UBERON:0004921!1.18e-09!129;UBERON:0004185!1.18e-09!129;UBERON:0005181!1.53e-09!35;UBERON:0000065!9.25e-09!53;UBERON:0000464!2.58e-08!104;UBERON:0003729!3.03e-08!5;UBERON:0000077!2.15e-07!130;UBERON:0002294!2.25e-07!7;UBERON:0001173!2.25e-07!7;UBERON:0004912!2.25e-07!7;UBERON:0000915!2.34e-07!52;UBERON:0005153!3.28e-07!37;UBERON:0000466!4.84e-07!126;UBERON:0003343!6.33e-07!4;UBERON:0004785!6.33e-07!4;UBERON:0005911!7.60e-07!82|ontology_enrichment_uberon_v019=UBERON:0002108;9.69e-17;4!UBERON:0000365;3.18e-16;5!UBERON:0005910;1.51e-13;6!UBERON:0005911;3.17e-10;36!UBERON:0005409;6.64e-10;22!UBERON:0000160;1.45e-09;17!UBERON:0002114;4.90e-08;2!UBERON:0004921;6.68e-07;33!UBERON:0004913;7.90e-07;1!UBERON:0003703;7.90e-07;1!UBERON:0001174;7.90e-07;1!UBERON:0004914;7.90e-07;1!UBERON:0000486;8.07e-07;12!UBERON:0004645;9.04e-07;1!UBERON:0001256;9.04e-07;1!UBERON:0001259;9.04e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002108,9.34e-17,4;UBERON:0000365,2.46e-16,5;UBERON:0005910,1.22e-13,6;UBERON:0004119,2.42e-10,160;UBERON:0000925,2.42e-10,160;UBERON:0006595,2.42e-10,160;UBERON:0004921,7.49e-10,118;UBERON:0000160,1.38e-09,17;UBERON:0005409,1.09e-08,25;UBERON:0001007,2.12e-08,145;UBERON:0001555,2.12e-08,145;UBERON:0007026,2.12e-08,145;UBERON:0002114,4.82e-08,2;UBERON:0004913,7.90e-07,1;UBERON:0003703,7.90e-07,1;UBERON:0001174,7.90e-07,1;UBERON:0004914,7.90e-07,1;UBERON:0004645,8.81e-07,1;UBERON:0001256,8.81e-07,1;UBERON:0001259,8.81e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534893840235659,0.492603536699674,0.708397031823113,0,0,0,0,0,0.739508020333575,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.09288586487763,1.11235332835329,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0.272746120590835,0,0.243947412259191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,0.329250856225877,0,0.603173834469785,0.833296006426766,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2632051389738,0,0.184161977871793,0,0,0,1.35359883872224,0.693138033939733,0,0,0.316654886678627,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.661139661443912,0.576570202095319,0.382838137483752,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,2.68120910214315,2.17781969722645,0,1.29151611801369,1.68471475667626,0,1.60806380144872,0,0,0,0,0,0,0,0,0,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0.507875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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:20257377..20257401,+ | |||
|id=chr7:20257377..20257401,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.52e-18!254;CL:0002076!3.24e-18!43;CL:0000223!2.81e-12!59;CL:0002368!2.14e-10!13;CL:0002251!1.30e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0000244;1.59e-11;4!CL:0000731;1.59e-11;4!CL:0000575;1.06e-10;2!CL:0002076;3.22e-09;42!CL:0000307;8.33e-08;3!CL:1001319;9.04e-07;1!CL:1000600;9.04e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.91e-15,253;CL:0002076,7.86e-13,42;CL:0000244,1.28e-11,4;CL:0000731,1.28e-11,4;CL:0000223,2.17e-10,58;CL:0000575,2.47e-10,2;CL:0000076,4.09e-09,63;CL:0000068,8.93e-08,3;CL:0000069,8.93e-08,3;CL:0000307,8.93e-08,3;CL:0000377,8.93e-08,3;CL:1001319,8.81e-07,1;CL:1000600,8.81e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;8.33e-08;3 | |||
|ontology_enrichment_disease=DOID:305!8.31e-21!106;DOID:1749!2.15e-18!14;DOID:0050687!1.64e-12!143;DOID:299!3.29e-11!25;DOID:162!8.56e-09!235;DOID:14566!2.72e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.09e-35;14!DOID:0050615;7.70e-11;16!DOID:1324;3.77e-08;15!DOID:299;6.33e-07;25!DOID:305;8.38e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,7.61e-35,14;DOID:305,1.79e-20,106;DOID:0050687,7.76e-14,143;DOID:0050615,6.63e-11,16;DOID:1324,3.13e-08,15;DOID:162,4.79e-08,235;DOID:14566,9.07e-08,239;DOID:299,6.19e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.69e-14!169;UBERON:0000925!8.69e-14!169;UBERON:0006595!8.69e-14!169;UBERON:0000344!9.64e-12!12;UBERON:0001007!5.50e-11!155;UBERON:0001555!5.50e-11!155;UBERON:0007026!5.50e-11!155;UBERON:0001004!2.70e-10!72;UBERON:0005178!5.71e-10!34;UBERON:0002224!5.71e-10!34;UBERON:0004921!1.18e-09!129;UBERON:0004185!1.18e-09!129;UBERON:0005181!1.53e-09!35;UBERON:0000065!9.25e-09!53;UBERON:0000464!2.58e-08!104;UBERON:0003729!3.03e-08!5;UBERON:0000077!2.15e-07!130;UBERON:0002294!2.25e-07!7;UBERON:0001173!2.25e-07!7;UBERON:0004912!2.25e-07!7;UBERON:0000915!2.34e-07!52;UBERON:0005153!3.28e-07!37;UBERON:0000466!4.84e-07!126;UBERON:0003343!6.33e-07!4;UBERON:0004785!6.33e-07!4;UBERON:0005911!7.60e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;9.69e-17;4!UBERON:0000365;3.18e-16;5!UBERON:0005910;1.51e-13;6!UBERON:0005911;3.17e-10;36!UBERON:0005409;6.64e-10;22!UBERON:0000160;1.45e-09;17!UBERON:0002114;4.90e-08;2!UBERON:0004921;6.68e-07;33!UBERON:0004913;7.90e-07;1!UBERON:0003703;7.90e-07;1!UBERON:0001174;7.90e-07;1!UBERON:0004914;7.90e-07;1!UBERON:0000486;8.07e-07;12!UBERON:0004645;9.04e-07;1!UBERON:0001256;9.04e-07;1!UBERON:0001259;9.04e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,9.34e-17,4;UBERON:0000365,2.46e-16,5;UBERON:0005910,1.22e-13,6;UBERON:0004119,2.42e-10,160;UBERON:0000925,2.42e-10,160;UBERON:0006595,2.42e-10,160;UBERON:0004921,7.49e-10,118;UBERON:0000160,1.38e-09,17;UBERON:0005409,1.09e-08,25;UBERON:0001007,2.12e-08,145;UBERON:0001555,2.12e-08,145;UBERON:0007026,2.12e-08,145;UBERON:0002114,4.82e-08,2;UBERON:0004913,7.90e-07,1;UBERON:0003703,7.90e-07,1;UBERON:0001174,7.90e-07,1;UBERON:0004914,7.90e-07,1;UBERON:0004645,8.81e-07,1;UBERON:0001256,8.81e-07,1;UBERON:0001259,8.81e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534893840235659,0.492603536699674,0.708397031823113,0,0,0,0,0,0.739508020333575,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.09288586487763,1.11235332835329,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0.272746120590835,0,0.243947412259191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,0.329250856225877,0,0.603173834469785,0.833296006426766,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2632051389738,0,0.184161977871793,0,0,0,1.35359883872224,0.693138033939733,0,0,0.316654886678627,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.661139661443912,0.576570202095319,0.382838137483752,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,2.68120910214315,2.17781969722645,0,1.29151611801369,1.68471475667626,0,1.60806380144872,0,0,0,0,0,0,0,0,0,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0.561421621224659,0.146508179271894,0,0,0,0.47748896947538,0.296964680832639,0.614321404198464,0,0,0,0,0,0.19924798825107,0,7.306049687774,0,1.72318727645497,0,0.898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0.437299999980979,0,4.77932482799099,3.81380475439149,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0.569261198172555,0.158936578980379,0.210998064528027,3.26465616318295,0.848118428603645,0,0,0.442287822516696,0,0,0,0,0,0,0,0.182454789215666,1.36965233252463,0,0,1.20990716048664,0,0,0.300646838828985,0,0,0,0,0,2.27687636823834,0,0,1.17590876897253,0.69647365264322,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.391102765469606,0.801588202515337,0.426905989478705,0,0.864542502924636,0,0.171594997861965,0.288109595976299,0,0.235694034616795,0,0,0,0,0,0,0,0,0.788662062837943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415440338029185,0.2249738915515,0.77380195455795,0,0.335434687599266,0.551639951094387,0.734364233889974,0,0.179287339332845,2.49489756515279,0,0,0,0,0,0,0,0.492555124496034,0,0,0,0,0,0,0,1.40963004463334,0.106787412567695,0.157204305099666,0,0,0,0,1.27668251554036,0,0,0,0,3.14108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0.983091635014877,0.422624246717254,0,0,0.344429959321631,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,14.1563668017288,0.733714394086716,3.81234698296116,0,0,0,0,0,0,0,0,13.6027599319682,0,0,0,0,0,0,0,0,1.91643641459393,0,0,0,0,0,0.576169937778896,0,0,0,0,0.333694205676207,0,0,1.12108865325516,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,3.2074961596167,0,0,0,2.84635677484205,0.731507549893617,0,0,0,0,0,0,0,0,0,1.81155412280008,2.70109553377806,1.31135736302374,1.41095188908457,0,0.707029641304878,0,0,0,0,0,0,0.199882311849858,3.39252483350749,2.47026410200984,1.36410323371586,0,0.458729283404541,0,0,0,0,2.645134202577,0,0,0,0,0,0,0,0.534434810531121,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.336760265072938,0.430333232356058,0.665320713092027,4.8027928480475,0,0,0,0,0,0,0.665756774185513,0.201273793591026,0.641136984606466 | |||
|short_description=p@chr7:20257377..20257401,+ | |||
}} |
Revision as of 00:24, 14 September 2013
Short description: | p@chr7:20257377..20257401, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:20257377..20257401, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.91e-15 | 253 |
endo-epithelial cell | 7.86e-13 | 42 |
transitional epithelial cell | 1.28e-11 | 4 |
urothelial cell | 1.28e-11 | 4 |
endodermal cell | 2.17e-10 | 58 |
corneal epithelial cell | 2.47e-10 | 2 |
squamous epithelial cell | 4.09e-09 | 63 |
duct epithelial cell | 8.93e-08 | 3 |
branched duct epithelial cell | 8.93e-08 | 3 |
tracheal epithelial cell | 8.93e-08 | 3 |
tracheoblast | 8.93e-08 | 3 |
bladder cell | 8.81e-07 | 1 |
lower urinary tract cell | 8.81e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
small intestine | 9.34e-17 | 4 |
urothelium | 2.46e-16 | 5 |
transitional epithelium | 1.22e-13 | 6 |
endoderm-derived structure | 2.42e-10 | 160 |
endoderm | 2.42e-10 | 160 |
presumptive endoderm | 2.42e-10 | 160 |
subdivision of digestive tract | 7.49e-10 | 118 |
intestine | 1.38e-09 | 17 |
gastrointestinal system | 1.09e-08 | 25 |
digestive system | 2.12e-08 | 145 |
digestive tract | 2.12e-08 | 145 |
primitive gut | 2.12e-08 | 145 |
duodenum | 4.82e-08 | 2 |
hepatopancreatic ampulla | 7.90e-07 | 1 |
extrahepatic bile duct | 7.90e-07 | 1 |
common bile duct | 7.90e-07 | 1 |
duodenal papilla | 7.90e-07 | 1 |
urinary bladder urothelium | 8.81e-07 | 1 |
wall of urinary bladder | 8.81e-07 | 1 |
mucosa of urinary bladder | 8.81e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.61e-35 | 14 |
carcinoma | 1.79e-20 | 106 |
cell type cancer | 7.76e-14 | 143 |
respiratory system cancer | 6.63e-11 | 16 |
lung cancer | 3.13e-08 | 15 |
cancer | 4.79e-08 | 235 |
disease of cellular proliferation | 9.07e-08 | 239 |
adenocarcinoma | 6.19e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.